Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 6.9e-306 1053.1 524 100.0
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.6e-305 1051.2 524 99.8
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.4e-298 1028.1 522 96.4
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 5.3e-298 1026.9 522 96.6
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 2.6e-297 1024.6 522 96.7
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 1.9e-287 991.9 522 93.5
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 4.8e-275 950.7 525 87.8
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 3.2e-271 937.9 527 86.3
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 1.1e-263 912.9 527 84.8
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 8.0e-262 906.7 530 84.3
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 1.3e-259 899.4 527 83.9
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 1.2e-254 882.9 525 81.7
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 2.3e-245 852.0 527 79.1
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 2.0e-180 636.3 537 58.1
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.0e-179 634.0 533 58.7
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 3.2e-178 629.0 526 58.6
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.6e-177 626.7 539 57.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 3.9e-176 622.1 536 58.6
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 5.1e-176 621.7 538 58.2
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 2.0e-175 619.8 533 57.4
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 3.3e-175 619.0 542 58.1
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 7.4e-175 617.8 530 57.0
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 1.1e-173 614.0 533 57.4
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 3.1e-173 612.5 542 56.5
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 4.1e-173 612.1 538 57.8
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 5.3e-173 611.7 542 56.6
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 6.9e-173 611.3 528 57.8
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 7.7e-172 607.8 526 56.8
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.3e-171 607.1 537 55.9
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.7e-171 606.7 539 56.0
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 6.5e-171 604.7 531 57.1
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 1.6e-169 600.1 531 56.7
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 1.6e-169 600.1 532 56.0
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 2.7e-169 599.4 525 57.0
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 6.1e-169 598.2 537 56.2
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 1.0e-168 597.4 521 56.8
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 1.4e-168 597.0 531 56.5
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 4.4e-167 592.0 528 57.2
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 1.3e-166 590.5 523 57.4
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 3.7e-166 589.0 530 56.0
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 6.3e-166 588.2 533 56.1
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 1.1e-165 587.4 527 54.3
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 5.3e-165 585.1 527 54.8
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 9.1e-165 584.3 527 54.3
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.7e-163 580.1 526 55.1
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 1.5e-162 577.0 532 53.4
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.9e-162 576.6 528 53.6
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 2.5e-162 576.2 531 56.5
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 4.2e-162 575.5 521 56.8
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.6e-161 573.5 521 56.6
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 2.1e-161 573.2 531 53.7
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 4.7e-161 572.0 525 53.7
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 4.0e-160 568.9 534 55.2
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 4.0e-160 568.9 525 54.5
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 8.8e-160 567.8 535 52.9
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 8.8e-160 567.8 572 51.4
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.3e-158 563.9 537 53.4
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.7e-158 563.5 527 53.5
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 2.8e-158 562.8 537 53.3
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 4.8e-158 562.0 534 52.2
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 1.8e-157 560.1 549 51.7
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 7.0e-157 558.1 525 52.8
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.2e-156 557.4 497 55.9
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 1.6e-156 557.0 520 53.5
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.2e-155 553.1 521 55.5
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 4.2e-154 548.9 524 51.5
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 6.1e-153 545.0 627 48.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 2.0e-151 540.0 490 55.1
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 4.4e-151 538.9 525 52.2
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 9.8e-151 537.7 524 51.5
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 1.3e-150 537.3 527 52.6
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 3.5e-148 529.3 531 51.0
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 5.9e-148 528.5 521 53.9
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 2.3e-147 526.6 524 53.2
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 7.2e-146 521.5 480 54.4
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 2.1e-145 520.0 531 50.7
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 3.0e-144 516.2 475 56.2
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 5.2e-144 515.4 509 53.2
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 1.7e-142 510.4 754 39.9
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 1.4e-141 507.3 467 53.7
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 2.4e-141 506.5 466 54.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 3.1e-141 506.1 355 71.3
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 7.8e-140 501.5 517 49.1
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 2.9e-139 499.6 494 58.5
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 2.0e-132 476.9 528 48.3
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 7.8e-132 474.9 522 47.9
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.5e-130 470.7 527 47.1
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 1.8e-128 463.8 364 60.2
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.3e-128 463.4 530 48.7
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 9.2e-125 451.4 434 52.1
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 5.4e-117 425.6 518 43.8
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 7.6e-111 405.2 525 42.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 2.9e-110 403.3 527 42.3
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 3.2e-109 399.8 534 42.1
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 2.1e-100 370.5 295 58.3
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 3.5e-100 369.8 465 44.9
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 2.1e-89 334.0 258 59.3
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 4.5e-87 326.2 256 58.6
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.1e-81 307.4 184 77.2
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 3.7e-81 306.6 523 34.8
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 4.5e-79 299.7 265 57.4
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 5.5e-77 292.7 273 57.5
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.3e-73 281.6 309 50.5
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 2.9e-70 270.4 278 51.1
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.2e-69 265.8 209 58.4
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.8e-64 251.1 252 55.6
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 3.2e-61 240.4 257 47.9
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 9.7e-58 228.8 439 36.4
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.1e-53 215.3 278 44.2
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.1e-48 198.7 189 58.2
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 1.1e-45 188.7 428 32.9
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 2.7e-36 157.5 139 61.9
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 2.7e-36 157.5 139 61.9
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 2.8e-33 147.5 123 58.5
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 4.1e-32 143.7 101 72.3
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.0e-30 139.0 298 30.9
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 8.6e-30 136.0 120 54.2
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 1.2e-26 125.6 493 26.4
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.0e-20 102.8 106 52.8
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 8.3e-17 92.8 131 43.5
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 3.1e-11 74.3 333 23.4
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 4.0e-11 73.9 338 25.7
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 5.8e-10 70.1 80 45.0
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 3.7e-09 67.4 367 22.6
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 3.7e-09 67.4 83 42.2
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 3.7e-09 67.4 410 21.5
BcaB07g33306 Brassica carinata HOM05D000305 ORTHO05D000065 8.3e-09 66.2 33 84.8
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 7.0e-08 63.2 33 72.7
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 2.7e-07 61.2 329 22.2
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 6.6e-06 56.6 344 21.8


User provided reference genes

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