Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01362 Brassica carinata HOM05D000458 ORTHO05D004796 5.4e-30 133.7 67 100.0
C03p91200 Brassica napus HOM05D000458 ORTHO05D004796 4.8e-26 120.6 61 98.4
Sp1g39720 Schrenkiella parvula HOM05D000458 ORTHO05D004796 1.3e-23 112.5 60 91.7
BcaC08g44049 Brassica carinata HOM05D000458 ORTHO05D004796 1.9e-22 108.6 60 88.3
BolC6t36630H Brassica oleracea HOM05D000458 ORTHO05D004796 1.9e-22 108.6 60 88.3
BraA05t20749Z Brassica rapa HOM05D000458 ORTHO05D004796 1.9e-22 108.6 60 88.3
BcaB02g10934 Brassica carinata HOM05D000458 ORTHO05D004796 3.2e-22 107.8 60 88.3
CARHR043390 Cardamine hirsuta HOM05D000458 ORTHO05D004796 1.3e-20 102.4 60 81.7
Carub.0001s4233 Capsella rubella HOM05D000458 ORTHO05D004796 1.1e-19 99.4 60 81.7
AT1G53165 Arabidopsis thaliana HOM05D000458 ORTHO05D004796 1.5e-19 99.0 60 81.7
AL1G61540 Arabidopsis lyrata HOM05D000458 ORTHO05D004796 1.9e-19 98.6 60 81.7
Aa31LG10G1970 Aethionema arabicum HOM05D000458 ORTHO05D004796 3.1e-17 91.3 60 73.3
AL3G27620 Arabidopsis lyrata HOM05D000458 ORTHO05D004796 3.4e-16 87.8 60 73.3
A05p34250 Brassica napus HOM05D000458 ORTHO05D004796 3.4e-16 87.8 60 71.7
BolC5t33886H Brassica oleracea HOM05D000458 ORTHO05D004796 3.4e-16 87.8 60 71.7
BraA05t22245Z Brassica rapa HOM05D000458 ORTHO05D004796 3.4e-16 87.8 60 71.7
BcaB06g29546 Brassica carinata HOM05D000458 ORTHO05D004796 2.9e-15 84.7 60 68.3
AT3G15220 Arabidopsis thaliana HOM05D000458 ORTHO05D004796 6.4e-15 83.6 60 70.0
THA.LOC104810460 Tarenaya hassleriana HOM05D000458 ORTHO05D004796 1.1e-14 82.8 62 64.5
THA.LOC104818087 Tarenaya hassleriana HOM05D000458 ORTHO05D004796 1.1e-14 82.8 64 62.5
A05p18560 Brassica napus HOM05D000458 ORTHO05D004796 1.9e-14 82.0 48 83.3
Sp3g13430 Schrenkiella parvula HOM05D000458 ORTHO05D004796 1.9e-14 82.0 60 68.3
Carub.0003s1488 Capsella rubella HOM05D000458 ORTHO05D004796 1.6e-13 79.0 60 65.0
C06p14490 Brassica napus HOM05D000458 ORTHO05D004796 4.6e-13 77.4 50 78.0
C05p52010 Brassica napus HOM05D000458 ORTHO05D004796 6.7e-12 73.6 53 69.8
Haze_09451 Corylus avellana HOM05D000458 ORTHO05D004796 1.5e-11 72.4 73 53.4
Prupe.4G176700 Prunus persica HOM05D000458 ORTHO05D004796 3.3e-11 71.2 71 50.7
Ciclev10007625m.g Citrus clementina HOM05D000458 ORTHO05D004796 7.4e-11 70.1 71 50.7
MD11G1252300 Malus domestica HOM05D000458 ORTHO05D004796 7.4e-11 70.1 69 47.8
RcHm_v2.0_Chr5g0032781 Rosa chinensis HOM05D000458 ORTHO05D004796 7.4e-11 70.1 73 47.9
Glyma.12G226300 Glycine max HOM05D000458 ORTHO05D004796 1.3e-10 69.3 70 50.0
Glyma.13G274500 Glycine max HOM05D000458 ORTHO05D004796 1.3e-10 69.3 70 50.0
Eucgr.F01158 Eucalyptus grandis HOM05D000458 ORTHO05D004796 1.6e-10 68.9 73 47.9
Lj1A840T52 Lonicera japonica HOM05D000458 ORTHO05D004796 2.1e-10 68.6 71 50.7
Actinidia09699 Actinidia chinensis HOM05D000458 ORTHO05D004796 2.8e-10 68.2 73 52.1
Glyma.12G162963 Glycine max HOM05D000458 ORTHO05D004796 3.7e-10 67.8 68 51.5
FAN11G2605 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.8e-10 67.4 73 46.6
FAN16G2185 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.8e-10 67.4 73 46.6
FAN25G3598 Fragaria x ananassa HOM05D000458 ORTHO05D004796 4.8e-10 67.4 73 46.6
Lalb_Chr25g0286251 Lupinus albus HOM05D000458 ORTHO05D004796 4.8e-10 67.4 66 51.5
TWI38G0342 Tripterygium wilfordii HOM05D000458 ORTHO05D004796 6.2e-10 67.0 73 47.9
CSS0021889 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 8.2e-10 66.6 73 52.1
Glyma.06G238000 Glycine max HOM05D000458 ORTHO05D004796 8.2e-10 66.6 70 50.0
FAN21G0672 Fragaria x ananassa HOM05D000458 ORTHO05D004796 1.1e-09 66.2 71 46.5
PGR083G0851 Punica granatum HOM05D000458 ORTHO05D004796 1.1e-09 66.2 73 47.9
Aa31LG8G2420 Aethionema arabicum HOM05D000458 ORTHO05D004796 1.4e-09 65.9 62 58.1
CiPaw.12G120000 Carya illinoinensis HOM05D000458 ORTHO05D004796 1.4e-09 65.9 72 47.2
TWI39G1101 Tripterygium wilfordii HOM05D000458 ORTHO05D004796 1.4e-09 65.9 73 47.9
FvH4_3g19600 Fragaria vesca HOM05D000458 ORTHO05D004796 1.8e-09 65.5 73 45.2
GSVIVG01014297001 Vitis vinifera HOM05D000458 ORTHO05D004796 1.8e-09 65.5 73 46.6
DCAR_020994 Daucus carota HOM05D000458 ORTHO05D004796 2.4e-09 65.1 73 47.9
Lalb_Chr20g0109541 Lupinus albus HOM05D000458 ORTHO05D004796 2.4e-09 65.1 66 53.0
Duzib170G0212 Durio zibethinus HOM05D000458 ORTHO05D004796 3.1e-09 64.7 73 50.7
Psat5g241840 Pisum sativum HOM05D000458 ORTHO05D004796 4.0e-09 64.3 70 47.1
Potri.001G397600 Populus trichocarpa HOM05D000458 ORTHO05D004796 4.0e-09 64.3 73 43.8
Lsat_1_v5_gn_5_128461 Lactuca sativa HOM05D000458 ORTHO05D004796 5.3e-09 63.9 72 45.8
Medtr2g078740 Medicago truncatula HOM05D000458 ORTHO05D004796 5.3e-09 63.9 70 48.6
Cpa.g.sc622.3 Carica papaya HOM05D000458 ORTHO05D004796 6.9e-09 63.5 73 46.6
Ca_03525_v3 Cicer arietinum L. HOM05D000458 ORTHO05D004796 6.9e-09 63.5 70 48.6
Phvul.005G074300 Phaseolus vulgaris HOM05D000458 ORTHO05D004796 6.9e-09 63.5 70 47.1
Lj3g0007512 Lotus japonicus HOM05D000458 ORTHO05D004796 9.0e-09 63.2 71 42.3
SGA_v2.0_scaffold73G24238 Striga asiatica HOM05D000458 ORTHO05D004796 9.0e-09 63.2 64 50.0
CiPaw.11G171700 Carya illinoinensis HOM05D000458 ORTHO05D004796 1.2e-08 62.8 72 45.8
AUR62019457 Chenopodium quinoa HOM05D000458 ORTHO05D004796 1.2e-08 62.8 69 44.9
Thecc.07G095400 Theobroma cacao HOM05D000458 ORTHO05D004796 1.5e-08 62.4 69 47.8
Peaxi162Scf00069g01722 Petunia axillaris HOM05D000458 ORTHO05D004796 2.0e-08 62.0 67 44.8
arahy.Tifrunner.gnm1.ann1.IF9FMX Arachis hypogaea HOM05D000458 ORTHO05D004796 2.6e-08 61.6 70 44.3
arahy.Tifrunner.gnm1.ann1.Q9DAYR Arachis hypogaea HOM05D000458 ORTHO05D004796 2.6e-08 61.6 70 44.3
AUR62036173 Chenopodium quinoa HOM05D000458 ORTHO05D004796 2.6e-08 61.6 69 43.5
MELO3C025602.2 Cucumis melo HOM05D000458 ORTHO05D004796 2.6e-08 61.6 72 44.4
CsaV3_4G033530 Cucumis sativus L. HOM05D000458 ORTHO05D004796 2.6e-08 61.6 72 44.4
Oeu037369.1 Olea europaea HOM05D000458 ORTHO05D004796 2.6e-08 61.6 63 52.4
CSS0014493 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 3.4e-08 61.2 73 46.6
CSS0025002 Camellia sinensis var. sinensis HOM05D000458 ORTHO05D004796 3.4e-08 61.2 73 46.6
Gohir.A01G061500 Gossypium hirsutum HOM05D000458 ORTHO05D004796 3.4e-08 61.2 73 49.3
QL08p022680 Quercus lobata HOM05D000458 ORTHO05D004796 3.4e-08 61.2 70 47.1
TPR.G7967 Trifolium pratense HOM05D000458 ORTHO05D004796 3.4e-08 61.2 70 47.1
vmacro11884 Vaccinium macrocarpon HOM05D000458 ORTHO05D004796 3.4e-08 61.2 68 50.0
Dinv14934 Davidia involucrata HOM05D000458 ORTHO05D004796 4.5e-08 60.8 73 46.6
Duzib213G0712 Durio zibethinus HOM05D000458 ORTHO05D004796 4.5e-08 60.8 73 46.6
Lalb_Chr01g0016761 Lupinus albus HOM05D000458 ORTHO05D004796 4.5e-08 60.8 66 48.5
Nitab4.5_0002330g0040 Nicotiana tabacum HOM05D000458 ORTHO05D004796 5.8e-08 60.5 67 44.8
Dinv20197 Davidia involucrata HOM05D000458 ORTHO05D004796 7.6e-08 60.1 73 49.3
Rhsim06G0201500 Rhododendron simsii HOM05D000458 ORTHO05D004796 7.6e-08 60.1 68 50.0
CANSAT56G2918 Cannabis sativa HOM05D000458 ORTHO05D004796 1.3e-07 59.3 73 43.8
Cc05_g11800 Coffea canephora HOM05D000458 ORTHO05D004796 1.3e-07 59.3 67 43.3
Lj3g0001084 Lotus japonicus HOM05D000458 ORTHO05D004796 1.3e-07 59.3 70 42.9
TAR627G0899 Trochodendron aralioides HOM05D000458 ORTHO05D004796 1.3e-07 59.3 71 43.7
Gohir.D01G048100 Gossypium hirsutum HOM05D000458 ORTHO05D004796 1.7e-07 58.9 71 47.9
Gorai.002G067900 Gossypium raimondii HOM05D000458 ORTHO05D004796 1.7e-07 58.9 71 47.9
ClCG11G017900 Citrullus lanatus HOM05D000458 ORTHO05D004796 2.2e-07 58.5 72 43.1
SalBow7G2789 Salvia bowleyana HOM05D000458 ORTHO05D004796 2.2e-07 58.5 67 47.8
Phvul.011G164700 Phaseolus vulgaris HOM05D000458 ORTHO05D004796 3.8e-07 57.8 66 47.0
MBI02_g22346_MAGBIO Magnolia biondii HOM05D000458 ORTHO05D004796 4.9e-07 57.4 69 42.0
Nn1g06451 Nelumbo nucifera HOM05D000458 ORTHO05D004796 4.9e-07 57.4 70 44.3
Potri.011G116300 Populus trichocarpa HOM05D000458 ORTHO05D004796 6.5e-07 57.0 66 43.9
ECA236G3680 Erigeron canadensis HOM05D000458 ORTHO05D004796 1.4e-06 55.8 69 43.5
TAR629G0109 Trochodendron aralioides HOM05D000458 ORTHO05D004796 1.9e-06 55.5 73 41.1
ECA234G3073 Erigeron canadensis HOM05D000458 ORTHO05D004796 2.5e-06 55.1 71 42.3
HanXRQChr15g0495451 Helianthus annuus HOM05D000458 ORTHO05D004796 2.5e-06 55.1 69 42.0
Manes.03G106600 Manihot esculenta HOM05D000458 ORTHO05D004796 3.2e-06 54.7 62 43.5
Sed0017869 Sechium edule HOM05D000458 ORTHO05D004796 3.2e-06 54.7 72 43.1
MD03G1231300 Malus domestica HOM05D000458 ORTHO05D004796 4.2e-06 54.3 61 44.3
Aqoxy1G02338 Aquilegia oxysepala HOM05D000458 ORTHO05D004796 5.5e-06 53.9 71 42.3
Sed0018585 Sechium edule HOM05D000458 ORTHO05D004796 5.5e-06 53.9 72 38.9


User provided reference genes

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