Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.5e-161 572.8 290 100.0
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.5e-161 572.8 290 100.0
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-161 572.8 290 100.0
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 1.7e-160 569.3 290 99.3
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.1e-159 566.6 290 98.6
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 3.5e-158 561.6 285 98.6
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 6.0e-158 560.8 287 98.3
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 2.5e-156 555.4 292 96.6
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.6e-155 552.7 285 96.8
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 6.2e-155 550.8 285 96.1
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 3.1e-154 548.5 285 96.5
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 8.9e-154 547.0 292 94.5
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.2e-153 546.6 285 96.1
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 3.4e-153 545.0 281 97.9
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 8.3e-152 540.4 279 96.4
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 5.4e-151 537.7 284 95.8
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 1.0e-149 533.5 292 92.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.5e-148 529.6 285 92.3
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 8.9e-146 520.4 285 89.8
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.3e-144 516.5 280 90.4
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.2e-144 515.8 280 90.4
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 4.9e-144 514.6 291 86.9
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 4.9e-144 514.6 280 89.3
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.1e-143 513.5 281 89.0
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 1.1e-143 513.5 285 87.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 4.1e-143 511.5 285 87.4
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 9.2e-143 510.4 285 87.7
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.2e-143 510.4 278 89.2
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 3.5e-142 508.4 278 89.2
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 3.5e-142 508.4 285 86.3
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 6.0e-142 507.7 289 85.8
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 7.8e-142 507.3 278 88.5
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 1.3e-141 506.5 285 87.4
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.3e-141 506.5 278 88.5
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 3.9e-141 505.0 278 88.5
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 5.1e-141 504.6 275 90.2
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 5.1e-141 504.6 294 85.0
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 5.1e-141 504.6 285 86.7
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 4.3e-140 501.5 283 87.3
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 4.3e-140 501.5 281 87.2
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 5.6e-140 501.1 283 86.6
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 7.3e-140 500.7 283 86.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.3e-140 500.7 284 86.6
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 7.3e-140 500.7 293 83.3
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 7.3e-140 500.7 296 83.8
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.6e-140 500.4 281 86.5
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 9.6e-140 500.4 281 86.5
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 9.6e-140 500.4 282 86.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 2.8e-139 498.8 281 86.8
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 2.8e-139 498.8 285 85.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 2.8e-139 498.8 287 86.1
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.6e-139 498.4 287 85.0
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 1.1e-138 496.9 285 85.3
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 1.4e-138 496.5 279 88.2
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.0e-138 495.0 278 84.9
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 5.2e-138 494.6 279 84.6
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 8.9e-138 493.8 283 84.5
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 8.9e-138 493.8 278 85.6
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.5e-137 493.0 289 84.4
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 2.0e-137 492.7 288 84.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 2.6e-137 492.3 285 85.3
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.6e-137 492.3 278 84.9
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 2.6e-137 492.3 278 84.9
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 5.8e-137 491.1 293 81.9
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 9.9e-137 490.3 278 84.2
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 1.3e-136 490.0 286 83.6
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.3e-136 490.0 289 83.7
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 287 85.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 1.3e-136 490.0 301 81.4
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.3e-136 490.0 279 84.9
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.2e-136 489.2 280 86.4
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 2.2e-136 489.2 287 85.0
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 2.2e-136 489.2 283 84.5
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 2.9e-136 488.8 285 83.5
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 3.8e-136 488.4 279 84.9
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 4.9e-136 488.0 289 83.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 8.4e-136 487.3 283 84.1
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.4e-136 487.3 292 81.5
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.1e-135 486.9 283 83.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 1.9e-135 486.1 278 84.9
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 3.2e-135 485.3 287 83.3
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.5e-134 481.9 281 83.6
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 4.6e-134 481.5 297 81.8
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.7e-133 479.6 287 80.5
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 1.1e-132 476.9 280 82.9
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.1e-132 476.9 286 81.5
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.5e-132 476.5 281 89.0
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 2.5e-132 475.7 278 82.7
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 5.6e-132 474.6 278 82.7
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 5.6e-132 474.6 278 83.5
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 4.8e-131 471.5 287 79.4
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 6.2e-131 471.1 280 81.8
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.1e-131 470.7 278 83.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.1e-130 470.3 285 81.4
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 1.4e-130 469.9 280 85.0
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 2.4e-130 469.2 285 81.8
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 3.1e-130 468.8 293 78.8
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 4.0e-130 468.4 278 83.1
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 1.2e-129 466.8 287 80.8
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 4.4e-129 464.9 263 85.6
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.7e-128 463.0 285 80.7
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 3.8e-128 461.8 302 78.1
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 4.9e-128 461.5 288 79.5
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 6.4e-128 461.1 296 78.0
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 3.2e-127 458.8 291 77.3
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 3.2e-127 458.8 277 81.2
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 7.1e-127 457.6 291 79.4
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 9.3e-127 457.2 283 79.2
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.2e-126 456.8 287 79.1
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 2.7e-126 455.7 279 79.9
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 4.6e-126 454.9 293 77.8
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 7.9e-126 454.1 284 79.6
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 1.7e-125 453.0 287 79.4
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 3.3e-124 448.7 360 66.9
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 4.8e-123 444.9 301 74.1
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 6.2e-123 444.5 254 85.4
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 5.3e-122 441.4 260 83.1
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.3e-122 441.4 287 76.7
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 1.2e-121 440.3 307 73.3
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 7.6e-121 437.6 275 78.9
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 9.9e-121 437.2 287 75.6
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 6.4e-120 434.5 257 81.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 6.9e-114 414.5 248 81.9
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.5e-113 411.8 289 69.2
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 5.8e-113 411.4 219 90.0
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 1.0e-112 410.6 278 75.5
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 6.5e-112 407.9 258 77.9
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 7.1e-111 404.4 219 88.1
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.0e-109 399.1 216 88.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 3.0e-109 399.1 216 88.0
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 8.2e-107 391.0 248 75.4
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 1.3e-104 383.6 215 87.0
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.9e-103 379.8 249 73.1
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 4.2e-103 378.6 248 71.8
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 2.8e-99 365.9 253 68.8
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 2.8e-99 365.9 198 87.9
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.7e-99 365.5 293 66.2
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.1e-94 348.2 215 80.0
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 2.2e-91 339.7 180 90.0
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 3.1e-90 335.9 180 90.6
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 4.2e-87 325.5 208 78.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.6e-81 306.2 172 86.0
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 4.5e-81 305.4 186 81.7
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.8e-77 293.5 219 72.6
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 1.5e-71 273.9 152 86.2
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.4e-66 257.3 209 69.9
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.1e-66 256.1 194 67.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.2e-61 238.8 145 80.7
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-52 210.3 119 84.0
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 7.0e-50 201.8 249 48.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 1.5e-44 184.1 157 62.4
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 2.0e-44 183.7 105 83.8
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 2.0e-44 183.7 135 70.4
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.7e-43 179.5 179 57.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 7.3e-39 165.2 96 82.3
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.4e-37 161.0 87 86.2
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 8.9e-37 158.3 89 95.5
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 5.6e-31 139.0 305 32.8
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.1e-30 137.1 88 75.0
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.4e-28 129.8 196 43.4
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 1.2e-25 121.3 66 92.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-25 121.3 66 92.4
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 2.7e-25 120.2 170 42.4
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.4e-19 98.6 62 79.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 8.4e-19 98.6 62 79.0
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 7.8e-17 92.0 53 79.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 5.1e-16 89.4 156 38.5
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 4.3e-15 86.3 80 57.5
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 7.3e-15 85.5 83 54.2
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 6.2e-14 82.4 92 53.3
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 2.4e-13 80.5 82 58.5
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 2.0e-12 77.4 103 46.6
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 1.3e-11 74.7 59 64.4
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 1.7e-11 74.3 59 69.5
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 3.8e-11 73.2 110 40.9
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 3.0e-08 63.5 57 52.6
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.1e-07 61.6 43 72.1
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 9.6e-07 58.5 53 56.6
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 9.6e-07 58.5 34 76.5


User provided reference genes

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