Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01327 Brassica carinata HOM05D000138 ORTHO05D032089 2.0e-77 292.4 149 100.0
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 2.3e-41 172.6 92 94.6
BcaC01g04982 Brassica carinata HOM05D000138 ORTHO05D000078 5.8e-32 141.4 116 69.8
C03p31440 Brassica napus HOM05D000138 ORTHO05D000078 5.8e-32 141.4 116 69.8
BolC3t15492H Brassica oleracea HOM05D000138 ORTHO05D000078 5.8e-32 141.4 116 69.8
A03p26310 Brassica napus HOM05D000138 ORTHO05D000078 4.1e-30 135.2 116 67.2
BcaB01g03108 Brassica carinata HOM05D000138 ORTHO05D000078 5.4e-30 134.8 111 72.1
BraA03t11845Z Brassica rapa HOM05D000138 ORTHO05D000078 1.2e-29 133.7 116 68.1
Sp4g11380 Schrenkiella parvula HOM05D000138 ORTHO05D000078 2.0e-24 116.3 127 59.1
BolC4t23771H Brassica oleracea HOM05D000138 ORTHO05D000078 9.3e-22 107.5 121 57.9
A07p19090 Brassica napus HOM05D000138 ORTHO05D000078 1.6e-21 106.7 123 56.9
BraA07t29616Z Brassica rapa HOM05D000138 ORTHO05D000078 1.6e-21 106.7 123 56.9
Thhalv10016626m.g Eutrema salsugineum HOM05D000138 ORTHO05D000078 2.1e-21 106.3 124 57.3
BcaC02g10976 Brassica carinata HOM05D000138 ORTHO05D000078 1.7e-20 103.2 117 53.8
C04p22720 Brassica napus HOM05D000138 ORTHO05D000078 1.7e-20 103.2 117 53.8
CARHR121560 Cardamine hirsuta HOM05D000138 ORTHO05D000078 1.7e-20 103.2 125 54.4
BcaB02g10171 Brassica carinata HOM05D000138 ORTHO05D000078 3.9e-20 102.1 117 55.6
Carub.0004s0952 Capsella rubella HOM05D000138 ORTHO05D000078 3.3e-19 99.0 133 52.6
AL4G23050 Arabidopsis lyrata HOM05D000138 ORTHO05D000078 4.3e-19 98.6 126 51.6
Aa31LG5G7670 Aethionema arabicum HOM05D000138 ORTHO05D000078 9.6e-19 97.4 128 52.3
AT2G28550 Arabidopsis thaliana HOM05D000138 ORTHO05D000078 9.6e-19 97.4 126 52.4
THA.LOC104800621 Tarenaya hassleriana HOM05D000138 ORTHO05D000078 3.1e-17 92.4 123 50.4
BcaC03g16026 Brassica carinata HOM05D000138 ORTHO05D032649 1.9e-14 83.2 130 49.2
C02p20370 Brassica napus HOM05D000138 ORTHO05D023918 4.2e-14 82.0 109 49.5
BolC2t08168H Brassica oleracea HOM05D000138 ORTHO05D023918 7.1e-14 81.3 111 48.6
Cpa.g.sc139.43 Carica papaya HOM05D000138 ORTHO05D000078 1.6e-13 80.1 131 42.7
BraA10t43810Z Brassica rapa HOM05D000138 ORTHO05D000078 8.7e-12 74.3 120 45.0
Gorai.003G139800 Gossypium raimondii HOM05D000138 ORTHO05D000078 1.5e-11 73.6 126 44.4
Sc21g0000160 Simmondsia chinensis HOM05D000138 ORTHO05D000078 1.5e-11 73.6 120 45.8
Gohir.D03G132700 Gossypium hirsutum HOM05D000138 ORTHO05D000078 1.9e-11 73.2 127 44.1
Gohir.A03G035500 Gossypium hirsutum HOM05D000138 ORTHO05D000078 2.5e-11 72.8 127 42.5
A10p17270 Brassica napus HOM05D000138 ORTHO05D000078 3.3e-11 72.4 124 41.9
Manes.11G139300 Manihot esculenta HOM05D000138 ORTHO05D000078 3.3e-11 72.4 126 43.7
Nitab4.5_0000848g0220 Nicotiana tabacum HOM05D000138 ORTHO05D000078 3.3e-11 72.4 101 47.5
CiPaw.14G076000 Carya illinoinensis HOM05D000138 ORTHO05D000078 4.3e-11 72.0 131 45.0
C09p52620 Brassica napus HOM05D000138 ORTHO05D000078 5.6e-11 71.6 123 43.1
BolC9t58128H Brassica oleracea HOM05D000138 ORTHO05D000078 5.6e-11 71.6 123 43.1
Duzib170G0154 Durio zibethinus HOM05D000138 ORTHO05D000078 5.6e-11 71.6 128 43.0
Manes.04G027000 Manihot esculenta HOM05D000138 ORTHO05D000078 5.6e-11 71.6 128 43.0
Ciclev10028259m.g Citrus clementina HOM05D000138 ORTHO05D000078 7.4e-11 71.2 125 42.4
Haze_23954 Corylus avellana HOM05D000138 ORTHO05D000078 7.4e-11 71.2 128 43.0
Rhsim01G0221900 Rhododendron simsii HOM05D000138 ORTHO05D000078 9.6e-11 70.9 143 42.0
Nitab4.5_0000372g0010 Nicotiana tabacum HOM05D000138 ORTHO05D000078 2.1e-10 69.7 105 46.7
Thecc.09G336100 Theobroma cacao HOM05D000138 ORTHO05D000078 2.1e-10 69.7 125 43.2
Dinv06353 Davidia involucrata HOM05D000138 ORTHO05D000078 2.8e-10 69.3 136 41.2
Nitab4.5_0006152g0040 Nicotiana tabacum HOM05D000138 ORTHO05D000078 2.8e-10 69.3 102 47.1
RhsimUnG0139000 Rhododendron simsii HOM05D000138 ORTHO05D000078 3.7e-10 68.9 120 47.5
Hma1.2p1_0407F.1_g146190 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 6.2e-10 68.2 120 43.3
Nitab4.5_0000270g0090 Nicotiana tabacum HOM05D000138 ORTHO05D000078 6.2e-10 68.2 110 47.3
A02p06580 Brassica napus HOM05D000138 ORTHO05D000078 8.1e-10 67.8 116 44.0
C02p11870 Brassica napus HOM05D000138 ORTHO05D000078 8.1e-10 67.8 116 44.0
Atru.chr3.3739 Acer truncatum HOM05D000138 ORTHO05D000078 1.1e-09 67.4 131 41.2
Actinidia03019 Actinidia chinensis HOM05D000138 ORTHO05D000078 2.4e-09 66.2 116 42.2
C05p11540 Brassica napus HOM05D001350 ORTHO05D032649 2.4e-09 66.2 82 53.7
Gohir.D05G100200 Gossypium hirsutum HOM05D000138 ORTHO05D000078 2.4e-09 66.2 130 42.3
BraA02t05741Z Brassica rapa HOM05D000138 ORTHO05D000078 3.1e-09 65.9 116 44.0
Gohir.A05G100400 Gossypium hirsutum HOM05D000138 ORTHO05D000078 3.1e-09 65.9 130 42.3
Medtr2g093060 Medicago truncatula HOM05D000138 ORTHO05D000078 3.1e-09 65.9 116 42.2
Lj3g0017388 Lotus japonicus HOM05D000138 ORTHO05D000078 4.0e-09 65.5 122 42.6
BolC2t07284H Brassica oleracea HOM05D000138 ORTHO05D000078 5.3e-09 65.1 116 43.1
Gorai.009G104200 Gossypium raimondii HOM05D000138 ORTHO05D000078 5.3e-09 65.1 128 43.0
TWI79G0541 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 5.3e-09 65.1 126 39.7
Gohir.A08G000092 Gossypium hirsutum HOM05D000138 ORTHO05D000078 6.9e-09 64.7 119 41.2
Rhsim13G0090400 Rhododendron simsii HOM05D000138 ORTHO05D000078 9.0e-09 64.3 122 45.1
Medtr4g061200 Medicago truncatula HOM05D000138 ORTHO05D000078 1.2e-08 63.9 112 42.0
TWI31G0284 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 1.2e-08 63.9 126 38.9
BcaB05g22622 Brassica carinata HOM05D000138 ORTHO05D000078 1.5e-08 63.5 115 43.5
Lj3g0016040 Lotus japonicus HOM05D000138 ORTHO05D000078 1.5e-08 63.5 121 43.8
arahy.Tifrunner.gnm1.ann1.KDI7TH Arachis hypogaea HOM05D000138 ORTHO05D000078 2.0e-08 63.2 130 43.1
arahy.Tifrunner.gnm1.ann1.YSN9W3 Arachis hypogaea HOM05D000138 ORTHO05D000078 2.0e-08 63.2 130 43.1
BolC2t09794H Brassica oleracea HOM05D000138 ORTHO05D023918 2.0e-08 63.2 111 39.6
TPR.G11557 Trifolium pratense HOM05D000138 ORTHO05D000078 2.0e-08 63.2 121 41.3
TAR633G2276 Trochodendron aralioides HOM05D000138 ORTHO05D000078 2.0e-08 63.2 140 42.1
Psat5g277120 Pisum sativum HOM05D000138 ORTHO05D000078 2.6e-08 62.8 117 41.9
VMungo1127G0969 Vigna mungo HOM05D000138 ORTHO05D000078 2.6e-08 62.8 121 39.7
Actinidia38241 Actinidia chinensis HOM05D000138 ORTHO05D000078 3.4e-08 62.4 136 39.0
COL.COLO4_18384 Corchorus olitorius HOM05D000138 ORTHO05D000078 3.4e-08 62.4 111 43.2
Phvul.L000308 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 3.4e-08 62.4 120 41.7
PGR102G2138 Punica granatum HOM05D000138 ORTHO05D000078 3.4e-08 62.4 120 40.0
Haze_16946 Corylus avellana HOM05D000138 ORTHO05D000078 4.5e-08 62.0 118 44.1
Duzib150G0277 Durio zibethinus HOM05D000138 ORTHO05D000078 4.5e-08 62.0 127 40.9
SGA_v2.0_scaffold94G28662 Striga asiatica HOM05D000138 ORTHO05D000078 4.5e-08 62.0 119 42.9
Actinidia07098 Actinidia chinensis HOM05D000138 ORTHO05D000078 5.8e-08 61.6 131 42.0
Gohir.D08G008900 Gossypium hirsutum HOM05D000138 ORTHO05D000078 5.8e-08 61.6 119 39.5
Gorai.004G002100 Gossypium raimondii HOM05D000138 ORTHO05D000078 5.8e-08 61.6 119 39.5
Oeu029105.1 Olea europaea HOM05D000138 ORTHO05D000078 5.8e-08 61.6 117 40.2
Prupe.6G091100 Prunus persica HOM05D000138 ORTHO05D000078 5.8e-08 61.6 134 40.3
QL01p035865 Quercus lobata HOM05D000138 ORTHO05D000078 5.8e-08 61.6 136 36.8
PGSC0003DMG400027904 Solanum tuberosum HOM05D000138 ORTHO05D000078 5.8e-08 61.6 99 42.4
CiPaw.13G104700 Carya illinoinensis HOM05D000138 ORTHO05D000078 7.6e-08 61.2 121 41.3
Sopen09g002130 Solanum pennellii HOM05D000138 ORTHO05D000078 7.6e-08 61.2 99 42.4
Sopen09g002150 Solanum pennellii HOM05D000138 ORTHO05D000078 7.6e-08 61.2 99 42.4
Actinidia37282 Actinidia chinensis HOM05D000138 ORTHO05D000078 9.9e-08 60.8 129 38.0
CSS0041049 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 9.9e-08 60.8 138 37.7
CiPaw.02G177200 Carya illinoinensis HOM05D000138 ORTHO05D000078 9.9e-08 60.8 129 41.1
Psat7g221800 Pisum sativum HOM05D000138 ORTHO05D000078 9.9e-08 60.8 126 40.5
Thecc.10G066100 Theobroma cacao HOM05D000138 ORTHO05D000078 9.9e-08 60.8 108 41.7
Actinidia00814 Actinidia chinensis HOM05D000138 ORTHO05D000078 1.3e-07 60.5 125 41.6
Cfa001583 Carpinus fangiana HOM05D000138 ORTHO05D000078 1.3e-07 60.5 118 43.2
Psat3g046960 Pisum sativum HOM05D000138 ORTHO05D000078 1.3e-07 60.5 107 39.3
TPR.G2969 Trifolium pratense HOM05D000138 ORTHO05D000078 1.3e-07 60.5 125 39.2
Ca_19231_v3 Cicer arietinum L. HOM05D000138 ORTHO05D000078 1.7e-07 60.1 131 39.7
Glyma.15G044400 Glycine max HOM05D000138 ORTHO05D000078 1.7e-07 60.1 121 41.3
Glyma.13G329700 Glycine max HOM05D000138 ORTHO05D000078 2.2e-07 59.7 121 40.5
Sed0014820 Sechium edule HOM05D000138 ORTHO05D000078 2.2e-07 59.7 120 41.7
TWI75G0775 Tripterygium wilfordii HOM05D000138 ORTHO05D000078 2.2e-07 59.7 126 40.5
Aa31LG1G12310 Aethionema arabicum HOM05D000138 ORTHO05D000078 2.9e-07 59.3 123 38.2
CANSAT54G2745 Cannabis sativa HOM05D000138 ORTHO05D000078 2.9e-07 59.3 135 37.0
CiPaw.01G277500 Carya illinoinensis HOM05D000138 ORTHO05D000078 2.9e-07 59.3 129 41.9
Cc01_g11840 Coffea canephora HOM05D000138 ORTHO05D000078 2.9e-07 59.3 133 38.3
Nn2g10630 Nelumbo nucifera HOM05D000138 ORTHO05D000078 2.9e-07 59.3 113 42.5
vmacro03145 Vaccinium macrocarpon HOM05D000138 ORTHO05D000078 2.9e-07 59.3 102 45.1
Cfa017498 Carpinus fangiana HOM05D000138 ORTHO05D000078 3.8e-07 58.9 105 41.0
Nn2g12971 Nelumbo nucifera HOM05D000138 ORTHO05D000078 3.8e-07 58.9 141 39.0
HPP92_010816 Vanilla planifolia HOM05D000138 ORTHO05D000078 3.8e-07 58.9 60 58.3
Dinv32815 Davidia involucrata HOM05D000138 ORTHO05D000078 4.9e-07 58.5 140 38.6
Duzib114G0178 Durio zibethinus HOM05D000138 ORTHO05D000078 4.9e-07 58.5 143 38.5
Hma1.2p1_1870F.1_g306080 Hydrangea macrophylla HOM05D000138 ORTHO05D000078 4.9e-07 58.5 114 44.7
Cpa.g.sc1.271 Carica papaya HOM05D000138 ORTHO05D000078 6.4e-07 58.2 115 41.7
COL.COLO4_23762 Corchorus olitorius HOM05D000138 ORTHO05D000078 6.4e-07 58.2 113 41.6
Phvul.011G071100 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 6.4e-07 58.2 121 38.8
VMungo1080G1840 Vigna mungo HOM05D000138 ORTHO05D000078 6.4e-07 58.2 120 40.8
Atru.chr12.625 Acer truncatum HOM05D000138 ORTHO05D000078 8.4e-07 57.8 94 41.5
AT5G60120 Arabidopsis thaliana HOM05D000138 ORTHO05D000078 8.4e-07 57.8 109 40.4
CSS0004391 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 8.4e-07 57.8 123 39.8
CANSAT56G0090 Cannabis sativa HOM05D000138 ORTHO05D000078 8.4e-07 57.8 149 34.2
FAN06G1818 Fragaria x ananassa HOM05D000138 ORTHO05D000078 8.4e-07 57.8 134 38.1
FAN06G4708 Fragaria x ananassa HOM05D000138 ORTHO05D000078 8.4e-07 57.8 134 38.1
SalBow4G2295 Salvia bowleyana HOM05D000138 ORTHO05D000078 8.4e-07 57.8 120 37.5
THA.LOC104799479 Tarenaya hassleriana HOM05D000138 ORTHO05D000078 8.4e-07 57.8 134 37.3
AL71U10070 Arabidopsis lyrata HOM05D000138 ORTHO05D000078 1.1e-06 57.4 108 39.8
AL8G36720 Arabidopsis lyrata HOM05D000138 ORTHO05D000078 1.1e-06 57.4 108 39.8
Ca_08819_v3 Cicer arietinum L. HOM05D000138 ORTHO05D000078 1.1e-06 57.4 103 41.7
ClCG02G020780 Citrullus lanatus HOM05D000138 ORTHO05D000078 1.1e-06 57.4 130 38.5
Haze_20664 Corylus avellana HOM05D000138 ORTHO05D000078 1.1e-06 57.4 124 37.9
MELO3C025726.2 Cucumis melo HOM05D000138 ORTHO05D000078 1.1e-06 57.4 130 38.5
CsaV3_6G021830 Cucumis sativus L. HOM05D000138 ORTHO05D000078 1.1e-06 57.4 130 38.5
ECA233G3634 Erigeron canadensis HOM05D000138 ORTHO05D000078 1.1e-06 57.4 115 39.1
SGA_v2.0_scaffold35G14172 Striga asiatica HOM05D000138 ORTHO05D000078 1.1e-06 57.4 111 40.5
HPP92_017046 Vanilla planifolia HOM05D000138 ORTHO05D000078 1.1e-06 57.4 97 44.3
CSS0013012 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 1.4e-06 57.0 107 41.1
Lj2A106T34 Lonicera japonica HOM05D000138 ORTHO05D000078 1.4e-06 57.0 131 38.9
MD07G1180900 Malus domestica HOM05D000138 ORTHO05D000078 1.4e-06 57.0 142 39.4
Prupe.2G220100 Prunus persica HOM05D000138 ORTHO05D000078 1.4e-06 57.0 123 37.4
Prupe.6G231700 Prunus persica HOM05D000138 ORTHO05D000078 1.4e-06 57.0 108 41.7
RcHm_v2.0_Chr1g0364341 Rosa chinensis HOM05D000138 ORTHO05D000078 1.4e-06 57.0 133 39.8
unitig_899.g14670 Utricularia gibba HOM05D000138 ORTHO05D000078 1.4e-06 57.0 94 43.6
MSTRG.10295 Avicennia marina HOM05D000138 ORTHO05D000078 1.9e-06 56.6 118 38.1
CARHR273760 Cardamine hirsuta HOM05D000138 ORTHO05D000078 1.9e-06 56.6 135 38.5
Dinv37243 Davidia involucrata HOM05D000138 ORTHO05D000078 1.9e-06 56.6 127 36.2
Migut.H00413 Erythranthe guttata HOM05D000138 ORTHO05D000078 1.9e-06 56.6 120 39.2
Solyc09g007260.4 Solanum lycopersicum HOM05D000138 ORTHO05D000078 1.9e-06 56.6 100 40.0
PGSC0003DMG400012038 Solanum tuberosum HOM05D000138 ORTHO05D000078 1.9e-06 56.6 117 38.5
TPR.G36969 Trifolium pratense HOM05D000138 ORTHO05D000078 1.9e-06 56.6 114 40.4
Aa31LG4G14940 Aethionema arabicum HOM05D000138 ORTHO05D000078 3.2e-06 55.8 132 36.4
Hund22463 Selenicereus undatus HOM05D000138 ORTHO05D000078 3.2e-06 55.8 104 43.3
Solyc04g049800.3 Solanum lycopersicum HOM05D000138 ORTHO05D000078 3.2e-06 55.8 122 38.5
GSVIVG01025548001 Vitis vinifera HOM05D000138 ORTHO05D000078 3.2e-06 55.8 118 42.4
CSS0037440 Camellia sinensis var. sinensis HOM05D000138 ORTHO05D000078 4.2e-06 55.5 134 37.3
FAN01G2655 Fragaria x ananassa HOM05D000138 ORTHO05D000078 4.2e-06 55.5 131 37.4
Medtr7g100590 Medicago truncatula HOM05D000138 ORTHO05D000078 4.2e-06 55.5 110 40.9
THA.LOC104814846 Tarenaya hassleriana HOM05D000138 ORTHO05D000078 4.2e-06 55.5 132 35.6
TAR628G1675 Trochodendron aralioides HOM05D000138 ORTHO05D000078 4.2e-06 55.5 107 40.2
vmacro08690 Vaccinium macrocarpon HOM05D000138 ORTHO05D000078 4.2e-06 55.5 93 46.2
COL.COLO4_27093 Corchorus olitorius HOM05D000138 ORTHO05D000078 5.5e-06 55.1 103 39.8
Thhalv10013367m.g Eutrema salsugineum HOM05D000138 ORTHO05D000078 5.5e-06 55.1 108 39.8
FvH4_7g20380 Fragaria vesca HOM05D000138 ORTHO05D000078 5.5e-06 55.1 134 37.3
Gohir.A10G208000 Gossypium hirsutum HOM05D000138 ORTHO05D000078 5.5e-06 55.1 136 36.0
Lj1g0005547 Lotus japonicus HOM05D000138 ORTHO05D000078 5.5e-06 55.1 110 40.9
Phvul.001G174400 Phaseolus vulgaris HOM05D000138 ORTHO05D000078 5.5e-06 55.1 78 47.4
QL08p057127 Quercus lobata HOM05D000138 ORTHO05D000078 5.5e-06 55.1 117 40.2
TAR623G1691 Trochodendron aralioides HOM05D000138 ORTHO05D000078 5.5e-06 55.1 125 38.4
arahy.Tifrunner.gnm1.ann1.MRL478 Arachis hypogaea HOM05D000138 ORTHO05D000078 7.1e-06 54.7 132 41.7
FAN03G2275 Fragaria x ananassa HOM05D000138 ORTHO05D000078 7.1e-06 54.7 134 38.1
Glyma.12G073300 Glycine max HOM05D000138 ORTHO05D000078 7.1e-06 54.7 129 38.0
Glyma.19G178200 Glycine max HOM05D000138 ORTHO05D000078 7.1e-06 54.7 81 43.2
Os07g0235800 Oryza sativa ssp. japonica HOM05D000138 ORTHO05D000078 7.1e-06 54.7 127 36.2
Rhsim08G0099000 Rhododendron simsii HOM05D000138 ORTHO05D000078 7.1e-06 54.7 110 40.9
Actinidia13113 Actinidia chinensis HOM05D000138 ORTHO05D000078 9.3e-06 54.3 97 40.2
C02p37780 Brassica napus HOM05D000138 ORTHO05D023918 9.3e-06 54.3 109 38.5
Carub.0008s2084 Capsella rubella HOM05D000138 ORTHO05D000078 9.3e-06 54.3 110 38.2
Eucgr.J02113 Eucalyptus grandis HOM05D000138 ORTHO05D000078 9.3e-06 54.3 119 41.2
MD11G1121200 Malus domestica HOM05D000138 ORTHO05D000078 9.3e-06 54.3 139 36.7
Sed0000924 Sechium edule HOM05D000138 ORTHO05D000078 9.3e-06 54.3 130 36.9
Sc16g0004550 Simmondsia chinensis HOM05D000138 ORTHO05D000078 9.3e-06 54.3 92 44.6


User provided reference genes

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