Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.5e-136 489.6 263 100.0
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-118 429.9 263 91.6
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-116 423.7 263 90.5
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 2.4e-113 412.5 263 90.1
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 6.9e-113 411.0 254 90.6
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.5e-110 402.5 262 86.3
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 3.6e-109 398.7 262 85.5
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 8.7e-108 394.0 254 87.0
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-107 392.9 254 87.8
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.8e-105 386.3 261 85.4
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 5.9e-104 381.3 263 84.0
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 1.0e-103 380.6 262 80.5
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.3e-103 380.2 261 84.3
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.7e-103 379.8 262 80.9
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 3.6e-101 372.1 253 83.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.0e-100 370.5 260 79.6
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.4e-100 370.2 250 82.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 5.7e-91 338.2 260 73.1
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 5.5e-86 321.6 264 68.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.2e-85 320.5 263 68.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.6e-85 320.1 264 68.9
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.4e-84 317.0 261 70.1
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 1.4e-84 317.0 261 69.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.8e-84 316.6 260 69.2
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.0e-84 315.5 261 69.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 4.0e-84 315.5 259 69.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.2e-84 315.1 263 69.6
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 6.7e-84 314.7 260 69.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.5e-83 313.5 260 66.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-83 313.5 262 69.1
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 2.6e-83 312.8 260 66.9
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 7.5e-83 311.2 258 64.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.7e-82 310.1 261 70.5
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.2e-82 309.7 262 68.7
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.8e-82 309.3 259 67.2
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.7e-82 308.9 262 69.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 1.1e-81 307.4 260 68.1
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.4e-81 307.0 262 67.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.4e-81 307.0 260 68.1
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 4.1e-81 305.4 262 67.2
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 4.1e-81 305.4 262 63.7
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 4.1e-81 305.4 267 66.7
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.2e-80 303.9 263 68.1
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.7e-80 302.8 257 68.1
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 3.5e-80 302.4 260 67.3
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 4.5e-80 302.0 261 67.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.7e-79 300.1 261 64.8
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 2.9e-79 299.3 259 67.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 2.9e-79 299.3 265 66.8
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.9e-79 299.3 265 66.8
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 3.8e-79 298.9 261 66.3
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.8e-79 298.9 260 66.2
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.5e-79 298.1 259 64.5
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 8.5e-79 297.7 260 63.1
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.1e-78 297.4 256 68.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.1e-78 297.4 261 62.5
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.5e-78 297.0 259 62.5
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 2.5e-78 296.2 259 67.2
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.5e-78 296.2 265 64.2
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 3.2e-78 295.8 260 62.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.5e-78 295.0 261 64.8
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 9.4e-78 294.3 345 53.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 4.7e-77 292.0 260 62.7
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 8.0e-77 291.2 260 63.8
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.4e-76 290.4 218 68.3
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 1.8e-76 290.0 260 64.6
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.3e-76 289.7 271 61.6
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.0e-76 289.3 261 65.5
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 3.0e-76 289.3 262 60.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.0e-76 288.9 260 65.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 5.2e-76 288.5 264 64.8
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 8.8e-76 287.7 261 64.8
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.2e-75 287.3 262 65.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.0e-75 286.6 261 64.8
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 2.0e-75 286.6 209 68.9
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.6e-75 286.2 261 60.9
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.4e-75 285.8 265 66.0
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 4.4e-75 285.4 270 64.1
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 4.4e-75 285.4 252 66.3
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 5.7e-75 285.0 261 61.3
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 5.7e-75 285.0 261 62.8
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 1.3e-74 283.9 261 65.1
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 1.7e-74 283.5 262 64.9
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.8e-74 282.7 257 65.4
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 4.8e-74 282.0 263 61.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.4e-73 280.4 264 62.1
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.4e-73 279.6 260 60.4
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 9.1e-73 277.7 259 63.3
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.6e-72 276.9 265 64.5
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 2.0e-72 276.6 265 61.5
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 2.0e-72 276.6 263 64.3
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 2.0e-72 276.6 228 64.0
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 4.5e-72 275.4 261 63.2
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 4.5e-72 275.4 260 62.3
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.9e-72 275.0 265 64.2
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.3e-71 273.9 280 58.6
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.3e-71 273.9 261 62.8
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 7.2e-70 268.1 260 60.0
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 3.6e-69 265.8 262 56.5
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 3.0e-68 262.7 261 60.5
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 1.5e-67 260.4 264 57.6
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.7e-67 258.5 236 58.5
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.3e-66 257.3 303 55.8
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 8.3e-66 254.6 260 60.8
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.4e-65 253.1 256 59.8
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 4.1e-65 252.3 262 56.5
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 5.4e-65 251.9 260 60.0
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.9e-63 246.1 284 54.6
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.2e-61 240.7 348 48.9
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 8.0e-61 238.0 268 55.2
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 1.0e-60 237.7 250 59.2
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 9.8e-59 231.1 296 50.3
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 3.7e-58 229.2 259 53.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 6.4e-58 228.4 262 51.9
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.4e-57 226.5 254 54.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 7.3e-54 214.9 193 58.5
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.6e-53 213.8 260 50.0
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 4.7e-53 212.2 180 68.3
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 8.9e-52 208.0 262 51.5
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 2.6e-51 206.5 264 51.5
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 6.4e-50 201.8 229 50.2
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 7.0e-49 198.4 207 63.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 2.7e-48 196.4 251 44.6
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.3e-47 194.1 131 74.0
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 5.6e-46 188.7 129 72.1
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.8e-45 186.4 264 46.2
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 6.2e-45 185.3 257 47.9
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 1.3e-39 167.5 140 62.9
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.0e-39 166.4 129 64.3
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.2e-37 161.0 124 79.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.4e-33 145.6 152 55.3
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 4.6e-32 142.5 153 60.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.3e-31 140.2 271 37.6
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 7.3e-30 135.2 233 35.2
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.1e-28 129.8 83 80.7
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 6.9e-28 128.6 242 35.5
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.6e-27 126.7 224 33.5
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 3.8e-26 122.9 103 75.7
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.0e-23 113.2 351 35.9
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.1e-22 111.3 73 75.3
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 2.5e-22 110.2 93 59.1
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 2.0e-19 100.5 100 54.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 6.4e-18 95.5 80 60.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.5e-09 65.9 75 64.0
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 1.1e-06 58.2 136 30.9
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 1.1e-06 58.2 50 62.0
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 7.4e-06 55.5 44 54.5


User provided reference genes

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