Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01266 Brassica carinata HOM05D001412 ORTHO05D016744 5.5e-40 167.2 83 100.0
BcaC06g34357 Brassica carinata HOM05D005278 ORTHO05D016744 5.1e-30 134.0 73 91.8
CSS0030014 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D016744 3.0e-14 81.6 68 61.8
ClCG11G001720 Citrullus lanatus HOM05D001412 ORTHO05D002473 1.5e-13 79.3 67 62.7
A09p59300 Brassica napus HOM05D001412 ORTHO05D002473 3.4e-13 78.2 73 64.4
BraA09t41312Z Brassica rapa HOM05D001412 ORTHO05D002473 3.4e-13 78.2 73 64.4
Aa31LG8G16510 Aethionema arabicum HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
AL3G48760 Arabidopsis lyrata HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
AT2G19490 Arabidopsis thaliana HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
BcaB03g16735 Brassica carinata HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
BcaB08g34868 Brassica carinata HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
BcaC06g36589 Brassica carinata HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
A07p01290 Brassica napus HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
C07p02580 Brassica napus HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
BolC7t40656H Brassica oleracea HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
BraA07t27919Z Brassica rapa HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
Carub.0003s3378 Capsella rubella HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
Thhalv10022701m.g Eutrema salsugineum HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
Sp3g32870 Schrenkiella parvula HOM05D001412 ORTHO05D002473 4.4e-13 77.8 73 63.0
BcaC07g41250 Brassica carinata HOM05D001412 ORTHO05D002473 7.5e-13 77.0 73 61.6
C08p42560 Brassica napus HOM05D001412 ORTHO05D002473 7.5e-13 77.0 73 61.6
BolC8t51817H Brassica oleracea HOM05D001412 ORTHO05D002473 7.5e-13 77.0 73 61.6
CARHR109930 Cardamine hirsuta HOM05D001412 ORTHO05D002473 9.8e-13 76.6 76 60.5
Peaxi162Scf00028g00412 Petunia axillaris HOM05D001412 ORTHO05D002473 9.8e-13 76.6 73 60.3
Sed0016179 Sechium edule HOM05D001412 ORTHO05D002473 9.8e-13 76.6 73 60.3
Solyc05g055780.4 Solanum lycopersicum HOM05D001412 ORTHO05D002473 9.8e-13 76.6 73 60.3
Sopen05g034190 Solanum pennellii HOM05D001412 ORTHO05D002473 9.8e-13 76.6 73 60.3
Lj4g0010593 Lotus japonicus HOM05D001412 ORTHO05D002473 1.3e-12 76.3 73 60.3
Medtr4g126040 Medicago truncatula HOM05D001412 ORTHO05D002473 1.7e-12 75.9 73 58.9
QL02p062340 Quercus lobata HOM05D001412 ORTHO05D002473 1.7e-12 75.9 73 60.3
TPR.G9470 Trifolium pratense HOM05D001412 ORTHO05D002473 1.7e-12 75.9 73 58.9
Atru.chr7.1615 Acer truncatum HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Ca_21284_v3 Cicer arietinum L. HOM05D001412 ORTHO05D002473 2.2e-12 75.5 72 61.1
Ciclev10008716m.g Citrus clementina HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Cc06_g11530 Coffea canephora HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
COL.COLO4_18188 Corchorus olitorius HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Haze_25926 Corylus avellana HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
DCAR_024711 Daucus carota HOM05D001412 ORTHO05D001460 2.2e-12 75.5 73 58.9
Dinv36777 Davidia involucrata HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Gohir.A13G193100 Gossypium hirsutum HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Gorai.013G227300 Gossypium raimondii HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Hma1.2p1_0672F.1_g201100 Hydrangea macrophylla HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Lj4A294T56 Lonicera japonica HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Lalb_Chr07g0180891 Lupinus albus HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Rhsim05G0018500 Rhododendron simsii HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
THA.LOC104814625 Tarenaya hassleriana HOM05D001412 ORTHO05D002473 2.2e-12 75.5 76 59.2
vmacro17255 Vaccinium macrocarpon HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
GSVIVG01015188001 Vitis vinifera HOM05D001412 ORTHO05D002473 2.2e-12 75.5 73 58.9
Actinidia25245 Actinidia chinensis HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 58.9
Actinidia29907 Actinidia chinensis HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
CSS0042918 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
CSS0044456 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
CAN.G694.21 Capsicum annuum HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 58.9
Cpa.g.sc61.12 Carica papaya HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
Cfa003069 Carpinus fangiana HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 58.9
CiPaw.04G148400 Carya illinoinensis HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
Hma1.2p1_1838F.1_g304850 Hydrangea macrophylla HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
Nitab4.5_0006126g0010 Nicotiana tabacum HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 58.9
Rhsim03G0231500 Rhododendron simsii HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
Sed0000909 Sechium edule HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 58.9
PGSC0003DMG400023358 Solanum tuberosum HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 58.9
Thecc.09G087100 Theobroma cacao HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
TAR622G0136 Trochodendron aralioides HOM05D005263 ORTHO05D006891 2.8e-12 75.1 73 57.5
vmacro06299 Vaccinium macrocarpon HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 57.5
VMungo1309G0772 Vigna mungo HOM05D001412 ORTHO05D002473 2.8e-12 75.1 73 60.3
Duzib168G0737 Durio zibethinus HOM05D001412 ORTHO05D002473 3.7e-12 74.7 80 55.0
PGR142G2286 Punica granatum HOM05D001412 ORTHO05D002473 3.7e-12 74.7 73 57.5
Aqoxy5G03005 Aquilegia oxysepala HOM05D001412 ORTHO05D002473 4.8e-12 74.3 73 57.5
Glyma.17G053900 Glycine max HOM05D001412 ORTHO05D002473 4.8e-12 74.3 73 57.5
SHI05040 Sapria himalayana HOM05D001412 ORTHO05D002473 4.8e-12 74.3 73 58.9
CDE05G3162 Ceratophyllum demersum HOM05D001412 ORTHO05D002473 6.3e-12 73.9 73 57.5
Gohir.D13G198400 Gossypium hirsutum HOM05D001412 ORTHO05D002473 6.3e-12 73.9 73 57.5
MD02G1081700 Malus domestica HOM05D001412 ORTHO05D002473 6.3e-12 73.9 73 58.9
Phvul.003G135600 Phaseolus vulgaris HOM05D001412 ORTHO05D002473 6.3e-12 73.9 73 57.5
Phvul.009G231500 Phaseolus vulgaris HOM05D001412 ORTHO05D002473 6.3e-12 73.9 73 56.2
TAR629G0305 Trochodendron aralioides HOM05D001412 ORTHO05D002473 6.3e-12 73.9 73 57.5
arahy.Tifrunner.gnm1.ann1.HY2LYN Arachis hypogaea HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 58.9
arahy.Tifrunner.gnm1.ann1.Y11TJZ Arachis hypogaea HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 58.9
MSTRG.10553 Avicennia marina HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 57.5
Migut.L01503 Erythranthe guttata HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 57.5
Gohir.A06G073300 Gossypium hirsutum HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 56.2
Gohir.D06G072000 Gossypium hirsutum HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 56.2
Gorai.010G084000 Gossypium raimondii HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 56.2
Prupe.7G207400 Prunus persica HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 57.5
RcHm_v2.0_Chr2g0093621 Rosa chinensis HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 57.5
HPP92_002720 Vanilla planifolia HOM05D001412 ORTHO05D002473 8.3e-12 73.6 73 57.5
CSS0005282 Camellia sinensis var. sinensis HOM05D001412 ORTHO05D002473 1.1e-11 73.2 78 53.8
MD15G1209000 Malus domestica HOM05D001412 ORTHO05D002473 1.1e-11 73.2 73 57.5
Actinidia38452 Actinidia chinensis HOM05D001412 ORTHO05D002473 1.4e-11 72.8 73 56.2
ATR0582G297 Amborella trichopoda HOM05D001412 ORTHO05D002473 1.4e-11 72.8 73 57.5
CDE05G3022 Ceratophyllum demersum HOM05D001412 ORTHO05D002473 1.4e-11 72.8 73 56.2
PSO017G0435 Papaver somniferum HOM05D001412 ORTHO05D002473 1.4e-11 72.8 73 54.8
PSO478G3238 Papaver somniferum HOM05D001412 ORTHO05D002473 1.4e-11 72.8 73 54.8
Sc18g0002180 Simmondsia chinensis HOM05D001412 ORTHO05D002473 1.4e-11 72.8 73 56.2
DCAR_011966 Daucus carota HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 56.2
Dinv42330 Davidia involucrata HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 57.5
Migut.J00582 Erythranthe guttata HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 56.2
Eucgr.C00874 Eucalyptus grandis HOM05D001412 ORTHO05D002473 1.8e-11 72.4 76 55.3
HanXRQChr06g0178581 Helianthus annuus HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 56.2
Lj6g0021045 Lotus japonicus HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 57.5
MBI07_g07552_MAGBIO Magnolia biondii HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 56.2
Medtr2g039670 Medicago truncatula HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 57.5
Sc14g0000710 Simmondsia chinensis HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 54.8
TPR.G13421 Trifolium pratense HOM05D001412 ORTHO05D002473 1.8e-11 72.4 73 57.5
CiPaw.03G214000 Carya illinoinensis HOM05D001412 ORTHO05D002473 2.4e-11 72.0 75 56.0
FvH4_1g07730 Fragaria vesca HOM05D001412 ORTHO05D002473 2.4e-11 72.0 73 56.2
FAN19G1811 Fragaria x ananassa HOM05D001412 ORTHO05D002473 2.4e-11 72.0 73 56.2
FAN26G1529 Fragaria x ananassa HOM05D001412 ORTHO05D002473 2.4e-11 72.0 73 56.2
Manes.16G100900 Manihot esculenta HOM05D001412 ORTHO05D002473 2.4e-11 72.0 73 56.2
TWI63G0787 Tripterygium wilfordii HOM05D001412 ORTHO05D002473 2.4e-11 72.0 73 56.2
arahy.Tifrunner.gnm1.ann1.D3QW6U Arachis hypogaea HOM05D001412 ORTHO05D002473 3.1e-11 71.6 73 57.5
arahy.Tifrunner.gnm1.ann1.K2HVP1 Arachis hypogaea HOM05D001412 ORTHO05D002473 3.1e-11 71.6 73 57.5
Psat1g140080 Pisum sativum HOM05D001412 ORTHO05D002473 3.1e-11 71.6 73 57.5
TWI32G1321 Tripterygium wilfordii HOM05D001412 ORTHO05D002473 3.1e-11 71.6 73 54.8
ECA236G3807 Erigeron canadensis HOM05D001412 ORTHO05D002473 4.1e-11 71.2 73 56.2
Glyma.09G064300 Glycine max HOM05D001412 ORTHO05D002473 4.1e-11 71.2 73 57.5
Lsat_1_v5_gn_8_86900 Lactuca sativa HOM05D001412 ORTHO05D002473 4.1e-11 71.2 73 56.2
Lalb_Chr08g0232301 Lupinus albus HOM05D001412 ORTHO05D002473 4.1e-11 71.2 73 57.5
EL10Ac8g19189 Beta vulgaris HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 53.4
Ca_02171_v3 Cicer arietinum L. HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 54.8
FAN23G2148 Fragaria x ananassa HOM05D001412 ORTHO05D002473 5.4e-11 70.9 76 53.9
FAN26G1795 Fragaria x ananassa HOM05D001412 ORTHO05D002473 5.4e-11 70.9 76 53.9
Glyma.15G170600 Glycine max HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 56.2
HanXRQChr04g0126181 Helianthus annuus HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 56.2
Manes.03G035200 Manihot esculenta HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 56.2
Os01g0901200 Oryza sativa ssp. japonica HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 53.4
Zm00001eb144420 Zea mays HOM05D001412 ORTHO05D002473 5.4e-11 70.9 73 53.4
FAN28G0937 Fragaria x ananassa HOM05D001412 ORTHO05D002473 7.0e-11 70.5 76 53.9
Potri.006G148700 Populus trichocarpa HOM05D001412 ORTHO05D002473 7.0e-11 70.5 73 54.8
Potri.018G067900 Populus trichocarpa HOM05D001412 ORTHO05D002473 7.0e-11 70.5 73 56.2
Zm00001eb365600 Zea mays HOM05D001412 ORTHO05D002473 7.0e-11 70.5 73 53.4
Hund06670 Selenicereus undatus HOM05D001412 ORTHO05D002473 9.1e-11 70.1 73 54.8
PRCOL_00003016 Prasinoderma coloniale HOM05D001412 ORTHO05D002473 1.2e-10 69.7 73 54.8
Sabra06G0117600 Salix brachista HOM05D001412 ORTHO05D002473 1.2e-10 69.7 76 53.9
Ah.14g085150 Amaranthus hybridus HOM05D001412 ORTHO05D002473 1.6e-10 69.3 73 52.1
AUR62029049 Chenopodium quinoa HOM05D001412 ORTHO05D002473 1.6e-10 69.3 73 53.4
AUR62033945 Chenopodium quinoa HOM05D001412 ORTHO05D002473 1.6e-10 69.3 73 53.4
MELO3C031352.2 Cucumis melo HOM05D001412 ORTHO05D002473 2.0e-10 68.9 73 54.8
Manes.03G030866 Manihot esculenta HOM05D001412 ORTHO05D002473 2.7e-10 68.6 71 56.3
Mapoly0006s0306 Marchantia polymorpha HOM05D001412 ORTHO05D002473 2.7e-10 68.6 73 53.4
Eucgr.C03475 Eucalyptus grandis HOM05D001412 ORTHO05D002473 4.5e-10 67.8 67 55.2
Duzib150G1378 Durio zibethinus HOM05D001412 ORTHO05D002473 5.9e-10 67.4 64 56.2
Oeu017606.1 Olea europaea HOM05D001412 ORTHO05D002473 5.9e-10 67.4 71 53.5
unitig_578.g16417 Utricularia gibba HOM05D001412 ORTHO05D002473 5.9e-10 67.4 80 50.0
CsaV3_2G001420 Cucumis sativus L. HOM05D001412 ORTHO05D002473 7.7e-10 67.0 73 53.4
Oeu006023.1 Olea europaea HOM05D001412 ORTHO05D002473 1.0e-09 66.6 71 54.9
Os11g0302700 Oryza sativa ssp. japonica HOM05D001412 ORTHO05D002473 1.0e-09 66.6 73 50.7
Manes.03G031097 Manihot esculenta HOM05D001412 ORTHO05D002473 1.3e-09 66.2 62 61.3
Hma1.2p1_0476F.1_g160810 Hydrangea macrophylla HOM05D001412 ORTHO05D002473 1.7e-09 65.9 54 61.1
AagrBONN_evm.TU.Sc2ySwM_362.1779 Anthoceros agrestis HOM05D001412 ORTHO05D002473 2.9e-09 65.1 73 50.7
VMungo1215G0238 Vigna mungo HOM05D001412 ORTHO05D002473 6.5e-09 63.9 64 59.4
MELO3C004628.2 Cucumis melo HOM05D001412 ORTHO05D002473 1.5e-08 62.8 73 50.7
ClCG03G015460 Citrullus lanatus HOM05D001412 ORTHO05D002473 2.5e-08 62.0 72 50.0
PSO210G0216 Papaver somniferum HOM05D001412 ORTHO05D002473 2.5e-08 62.0 78 47.4
Sabra18G0059500 Salix brachista HOM05D001412 ORTHO05D002473 7.2e-08 60.5 43 69.8
SEGI_37152 Sequoiadendron giganteum HOM05D001412 ORTHO05D002473 7.2e-08 60.5 73 46.6
SGA_v2.0_scaffold23G10029 Striga asiatica HOM05D001412 ORTHO05D002473 1.2e-07 59.7 59 57.6
SGA_v2.0_scaffold21G09396 Striga asiatica HOM05D001412 ORTHO05D002473 1.6e-07 59.3 58 58.6
PSO210G0559 Papaver somniferum HOM05D001412 ORTHO05D002473 3.6e-07 58.2 80 45.0
Sed0001537 Sechium edule HOM05D001412 ORTHO05D002473 3.6e-07 58.2 73 46.6
Nitab4.5_0003493g0020 Nicotiana tabacum HOM05D001412 ORTHO05D002473 8.0e-07 57.0 88 45.5
Hma1.2p1_1453F.1_g284320 Hydrangea macrophylla HOM05D001412 ORTHO05D028414 1.4e-06 56.2 38 71.1
BolC6t38018H Brassica oleracea HOM05D022847 ORTHO05D016744 1.8e-06 55.8 48 60.4
Pp3c17_14880 Physcomitrium patens HOM05D001412 ORTHO05D002473 1.8e-06 55.8 73 46.6
CsaV3_2G001430 Cucumis sativus L. HOM05D001412 ORTHO05D002473 4.0e-06 54.7 73 42.5


User provided reference genes

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