Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01256 Brassica carinata HOM05D003595 ORTHO05D004132 2.7e-45 185.3 116 100.0
BolC3t21307H Brassica oleracea HOM05D003595 ORTHO05D004132 2.7e-45 185.3 116 100.0
C03p89850 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-44 181.8 116 97.4
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.0e-39 166.8 116 83.6
BraA08t32331Z Brassica rapa HOM05D003595 ORTHO05D004132 3.0e-36 155.2 115 80.0
Sp1g38020 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.3e-34 149.8 120 85.0
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.1e-33 145.2 116 78.4
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.5e-32 141.4 119 66.4
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 5.5e-30 134.4 120 72.5
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.2e-29 133.3 119 74.8
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 2.1e-29 132.5 120 71.7
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 2.1e-29 132.5 120 71.7
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 2.1e-29 132.5 120 71.7
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 8.0e-29 130.6 121 71.9
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 3.0e-28 128.6 120 63.3
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 3.0e-28 128.6 120 63.3
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 3.0e-28 128.6 120 63.3
BcaB02g11234 Brassica carinata HOM05D003595 ORTHO05D004132 2.6e-27 125.6 120 68.3
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 4.4e-27 124.8 120 62.5
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 3.7e-26 121.7 106 73.6
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 6.3e-26 120.9 120 59.2
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 6.3e-26 120.9 120 59.2
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 9.1e-25 117.1 118 71.2
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 1.8e-17 92.8 64 73.4
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 2.3e-12 75.9 56 62.5
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 1.5e-11 73.2 56 62.5
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 3.4e-11 72.0 60 60.0
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 4.4e-11 71.6 108 39.8
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 4.4e-11 71.6 122 38.5
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 5.7e-11 71.2 55 61.8
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 7.5e-11 70.9 56 60.7
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 7.5e-11 70.9 56 60.7
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 7.5e-11 70.9 56 60.7
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 7.5e-11 70.9 56 60.7
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 9.8e-11 70.5 56 60.7
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 1.3e-10 70.1 56 58.9
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 1.1e-09 67.0 54 57.4
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 2.4e-09 65.9 54 55.6
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.4e-09 65.9 57 50.9
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 4.1e-09 65.1 53 54.7
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 5.4e-09 64.7 51 60.8
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 5.4e-09 64.7 53 56.6
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 5.4e-09 64.7 53 56.6
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 5.4e-09 64.7 57 52.6
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 7.0e-09 64.3 51 56.9
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 9.1e-09 63.9 56 57.1
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 9.1e-09 63.9 103 37.9
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 56 55.4
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 1.6e-08 63.2 51 58.8
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.6e-08 63.2 118 36.4
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.6e-08 63.2 121 36.4
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-08 62.8 56 55.4
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 2.7e-08 62.4 56 55.4
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 5.9e-08 61.2 114 38.6
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 5.9e-08 61.2 56 50.0
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 7.7e-08 60.8 121 38.0
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 7.7e-08 60.8 127 34.6
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.0e-07 60.5 103 35.9
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.3e-07 60.1 112 42.0
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 1.3e-07 60.1 105 35.2
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.9e-07 58.9 57 45.6
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 3.8e-07 58.5 59 45.8
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 6.6e-07 57.8 55 50.9
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.6e-07 57.4 54 48.1
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 8.6e-07 57.4 57 49.1
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.1e-06 57.0 116 32.8
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.1e-06 57.0 55 50.9
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.5e-06 56.6 56 46.4
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 1.5e-06 56.6 107 31.8
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 2.5e-06 55.8 57 43.9
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 2.5e-06 55.8 54 50.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 2.5e-06 55.8 114 31.6
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.2e-06 55.1 106 34.9
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.2e-06 55.1 106 34.9
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 5.5e-06 54.7 114 34.2
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 5.5e-06 54.7 57 45.6
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 7.2e-06 54.3 61 45.9
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 7.2e-06 54.3 112 35.7
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 7.2e-06 54.3 50 48.0
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 9.5e-06 53.9 112 38.4
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 9.5e-06 53.9 106 34.9
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 9.5e-06 53.9 55 45.5


User provided reference genes

Program Settings