Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01241 Brassica carinata HOM05D004128 ORTHO05D092402 1.5e-123 446.8 342 100.0
BolC6t35308H Brassica oleracea HOM05D004128 ORTHO05D008395 3.4e-59 233.0 428 61.2
BcaC04g21799 Brassica carinata HOM05D004128 ORTHO05D018561 1.2e-53 214.5 384 65.4
C09p19220 Brassica napus HOM05D004128 ORTHO05D102580 1.6e-53 214.2 375 64.3
BolC3t20838H Brassica oleracea HOM05D004128 ORTHO05D104579 8.9e-52 208.4 411 59.6
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 1.1e-49 201.4 474 53.4
C02p36290 Brassica napus HOM05D004128 ORTHO05D097649 2.7e-48 196.8 324 69.1
A05p20890 Brassica napus HOM05D004128 ORTHO05D008395 3.5e-48 196.4 424 57.1
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 1.3e-39 167.9 169 60.4
C03p49800 Brassica napus HOM05D004128 ORTHO05D018561 2.8e-37 160.2 324 65.7
C06p23810 Brassica napus HOM05D004128 ORTHO05D013239 7.5e-35 152.1 324 67.6
A05p08790 Brassica napus HOM05D004128 ORTHO05D103552 5.4e-33 146.0 167 54.5
C02p41980 Brassica napus HOM05D004128 ORTHO05D008395 5.1e-31 139.4 181 66.9
C06p37060 Brassica napus HOM05D004128 ORTHO05D008395 4.7e-29 132.9 178 66.3
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 4.7e-29 132.9 180 65.0
A09p66370 Brassica napus HOM05D000181 ORTHO05D003134 2.3e-28 130.6 361 55.1
BolC2t10106H Brassica oleracea HOM05D004128 ORTHO05D013807 1.2e-27 128.3 121 61.2
BolC4t25487H Brassica oleracea HOM05D004128 ORTHO05D013807 9.9e-27 125.2 122 59.8
BcaC09g50406 Brassica carinata HOM05D004128 ORTHO05D008395 2.9e-26 123.6 330 44.2
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 3.7e-26 123.2 123 58.5
C08p39080 Brassica napus HOM05D004128 ORTHO05D018561 3.7e-26 123.2 305 63.6
C01p37540 Brassica napus HOM05D004128 ORTHO05D013239 1.1e-25 121.7 60 98.3
C03p49790 Brassica napus HOM05D004128 ORTHO05D013239 1.1e-25 121.7 60 98.3
C08p27820 Brassica napus HOM05D004128 ORTHO05D013239 1.4e-25 121.3 60 96.7
C09p52710 Brassica napus HOM05D004128 ORTHO05D013239 1.4e-25 121.3 59 98.3
BolC4t25488H Brassica oleracea HOM05D004128 ORTHO05D018561 1.6e-24 117.9 172 64.0
BolC5t30881H Brassica oleracea HOM05D004128 ORTHO05D041928 1.6e-24 117.9 59 94.9
BcaC06g35461 Brassica carinata HOM05D004128 ORTHO05D018561 1.3e-23 114.8 159 64.2
C03p82160 Brassica napus HOM05D004128 ORTHO05D013807 1.3e-23 114.8 124 56.5
BraA09t40313Z Brassica rapa HOM05D004128 ORTHO05D013807 1.3e-23 114.8 60 91.7
BraA09t36411Z Brassica rapa HOM05D004128 ORTHO05D013807 1.7e-23 114.4 60 91.7
BolC2t10454H Brassica oleracea HOM05D004128 ORTHO05D013807 3.9e-23 113.2 60 91.7
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 3.9e-23 113.2 112 62.5
C01p25850 Brassica napus HOM05D004128 ORTHO05D041928 1.1e-22 111.7 132 53.0
C04p23900 Brassica napus HOM05D004128 ORTHO05D101996 1.5e-22 111.3 60 90.0
BraA09t37800Z Brassica rapa HOM05D004128 ORTHO05D108612 1.5e-22 111.3 60 90.0
C08p39070 Brassica napus HOM05D004128 ORTHO05D013239 7.3e-22 109.0 56 92.9
BcaC07g39620 Brassica carinata HOM05D004128 ORTHO05D008395 2.8e-21 107.1 73 76.7
A09p48610 Brassica napus HOM05D004128 ORTHO05D013807 4.7e-21 106.3 53 94.3
BolC3t17275H Brassica oleracea HOM05D004128 ORTHO05D013807 6.2e-21 105.9 53 96.2
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 1.8e-20 104.4 73 78.1
BcaC01g04075 Brassica carinata HOM05D004128 ORTHO05D018561 4.0e-20 103.2 73 79.5
BcaC01g00878 Brassica carinata HOM05D004128 ORTHO05D096075 1.7e-18 97.8 77 70.1
BcaC01g00877 Brassica carinata HOM05D004128 ORTHO05D018561 2.2e-18 97.4 174 49.4
A10p06920 Brassica napus HOM05D004128 ORTHO05D028143 4.9e-18 96.3 339 53.7
BraA09t38472Z Brassica rapa HOM05D004128 ORTHO05D008395 1.2e-16 91.7 166 54.2
C03p82170 Brassica napus HOM05D004128 ORTHO05D024629 6.0e-16 89.4 51 88.2
BolC3t20535H Brassica oleracea HOM05D004128 ORTHO05D024629 6.0e-16 89.4 51 88.2
C03p70560 Brassica napus HOM05D008735 ORTHO05D013807 1.7e-15 87.8 67 70.1
BolC3t19332H Brassica oleracea HOM05D008735 ORTHO05D013807 1.7e-15 87.8 67 70.1
BcaC04g22448 Brassica carinata HOM05D004128 ORTHO05D096019 3.9e-15 86.7 181 59.7
BcaC04g20235 Brassica carinata HOM05D004128 ORTHO05D018561 6.6e-15 85.9 66 66.7
C09p46050 Brassica napus HOM05D004128 ORTHO05D013807 8.7e-15 85.5 67 67.2
BolC9t57475H Brassica oleracea HOM05D004128 ORTHO05D013807 8.7e-15 85.5 67 67.2
BraA09t37797Z Brassica rapa HOM05D004128 ORTHO05D024629 1.5e-14 84.7 51 82.4
BcaC06g35460 Brassica carinata HOM05D000054 ORTHO05D000171 1.9e-14 84.3 61 70.5
BcaC04g20236 Brassica carinata HOM05D008735 ORTHO05D013807 2.5e-14 84.0 67 67.2
A09p29460 Brassica napus HOM05D008735 ORTHO05D013807 3.3e-14 83.6 77 64.9
BcaB07g32839 Brassica carinata HOM05D004128 ORTHO05D008395 7.3e-14 82.4 147 39.5
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 7.3e-14 82.4 93 55.9
C04p32440 Brassica napus HOM05D008735 ORTHO05D099532 9.6e-14 82.0 146 55.5
BcaB04g17725 Brassica carinata HOM05D004128 ORTHO05D008395 1.2e-13 81.6 142 38.7
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 2.1e-13 80.9 150 41.3
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 2.8e-13 80.5 51 78.4
C03p70570 Brassica napus HOM05D004128 ORTHO05D008395 2.8e-13 80.5 51 78.4
BolC6t36978H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-12 78.6 156 53.2
C06p53090 Brassica napus HOM05D008735 ORTHO05D097507 1.4e-12 78.2 136 52.9
BolC5t31084H Brassica oleracea HOM05D004128 ORTHO05D013807 3.1e-12 77.0 36 100.0
A02p26840 Brassica napus HOM05D007203 ORTHO05D013810 2.0e-11 74.3 73 54.8
BraA02t07693Z Brassica rapa HOM05D007203 ORTHO05D013810 2.0e-11 74.3 73 54.8
BraA09t37753Z Brassica rapa HOM05D007203 ORTHO05D013810 3.4e-11 73.6 73 54.8
BolC8t49801H Brassica oleracea HOM05D007203 ORTHO05D013810 4.4e-11 73.2 73 54.8
BcaB04g18992 Brassica carinata HOM05D004128 ORTHO05D095711 5.8e-11 72.8 136 44.1
BcaB05g22460 Brassica carinata HOM05D008735 ORTHO05D094962 5.8e-11 72.8 136 44.1
A09p21540 Brassica napus HOM05D007203 ORTHO05D013810 9.9e-11 72.0 73 53.4
BolC6t39170H Brassica oleracea HOM05D004128 ORTHO05D008395 9.9e-11 72.0 73 53.4
BcaC08g42938 Brassica carinata HOM05D004128 ORTHO05D091119 1.7e-10 71.2 235 68.1
BcaB04g17661 Brassica carinata HOM05D004128 ORTHO05D008395 3.8e-10 70.1 88 50.0
A01p27690 Brassica napus HOM05D007203 ORTHO05D013810 4.9e-10 69.7 73 52.1
BraA01t02907Z Brassica rapa HOM05D007203 ORTHO05D013810 4.9e-10 69.7 73 52.1
C03p33430 Brassica napus HOM05D007203 ORTHO05D013810 6.4e-10 69.3 73 52.1
BcaC08g44612 Brassica carinata HOM05D007203 ORTHO05D011558 8.4e-10 68.9 79 48.1
BolC8t51479H Brassica oleracea HOM05D004128 ORTHO05D041843 1.1e-09 68.6 34 97.1
C06p17690 Brassica napus HOM05D004128 ORTHO05D013807 1.4e-09 68.2 34 91.2
C03p46960 Brassica napus HOM05D008735 ORTHO05D099308 1.9e-09 67.8 131 54.2
C03p79170 Brassica napus HOM05D008735 ORTHO05D098026 4.2e-09 66.6 139 55.4
BcaC07g40907 Brassica carinata HOM05D004128 ORTHO05D008395 7.1e-09 65.9 51 74.5
C03p85510 Brassica napus HOM05D004128 ORTHO05D013239 7.1e-09 65.9 109 43.1
BcaB08g34543 Brassica carinata HOM05D007203 ORTHO05D011558 1.6e-08 64.7 79 51.9
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 1.6e-08 64.7 86 52.3
BraA08t33244Z Brassica rapa HOM05D004128 ORTHO05D008395 1.6e-08 64.7 86 52.3
C02p46650 Brassica napus HOM05D008735 ORTHO05D098808 2.7e-08 63.9 376 43.6
BolC6t37871H Brassica oleracea HOM05D004128 ORTHO05D008395 3.5e-08 63.5 85 51.8
BolC9t57647H Brassica oleracea HOM05D004128 ORTHO05D024421 4.6e-08 63.2 73 47.9
BcaC02g08829 Brassica carinata HOM05D007203 ORTHO05D027555 7.8e-08 62.4 73 47.9
BcaB02g11374 Brassica carinata HOM05D004128 ORTHO05D008395 1.3e-07 61.6 79 44.3
BolC7t43900H Brassica oleracea HOM05D004128 ORTHO05D008395 1.7e-07 61.2 73 49.3
C05p41890 Brassica napus HOM05D004128 ORTHO05D024421 2.3e-07 60.8 73 46.6
BraA09t38520Z Brassica rapa HOM05D004128 ORTHO05D008395 2.3e-07 60.8 84 46.4
BcaC04g20090 Brassica carinata HOM05D004128 ORTHO05D008395 3.9e-07 60.1 73 46.6
A06p29400 Brassica napus HOM05D004128 ORTHO05D008395 1.1e-06 58.5 49 65.3
C01p48550 Brassica napus HOM05D004128 ORTHO05D008395 1.1e-06 58.5 49 65.3
C08p21910 Brassica napus HOM05D004128 ORTHO05D008395 1.1e-06 58.5 49 65.3
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-06 58.5 85 44.7
BolC9t58725H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-06 58.5 49 65.3
BcaC05g27574 Brassica carinata HOM05D007203 ORTHO05D039927 1.5e-06 58.2 62 53.2
BcaC08g45091 Brassica carinata HOM05D004128 ORTHO05D008395 1.5e-06 58.2 81 49.4
BolC2t09432H Brassica oleracea HOM05D004128 ORTHO05D008395 1.9e-06 57.8 58 58.6
BcaB05g23062 Brassica carinata HOM05D004128 ORTHO05D092751 2.5e-06 57.4 64 46.9
C01p16000 Brassica napus HOM05D007203 ORTHO05D097579 4.3e-06 56.6 181 34.3
BcaB01g01921 Brassica carinata HOM05D007203 ORTHO05D011558 5.6e-06 56.2 52 55.8
C03p60470 Brassica napus HOM05D004128 ORTHO05D008395 5.6e-06 56.2 49 61.2
C03p80320 Brassica napus HOM05D008735 ORTHO05D097331 9.6e-06 55.5 371 42.9


User provided reference genes

Program Settings