Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 4.0e-146 521.5 286 100.0
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 5.5e-140 501.1 288 94.4
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 7.0e-119 431.0 294 79.3
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 5.0e-117 424.9 286 83.9
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 8.6e-117 424.1 288 82.6
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 1.6e-115 419.9 293 79.5
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 3.1e-114 415.6 295 75.9
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 3.5e-110 402.1 277 76.5
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 1.2e-107 393.7 280 77.5
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 1.8e-106 389.8 283 74.2
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 2.4e-103 379.4 255 82.4
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 6.8e-98 361.3 274 74.5
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 8.6e-93 344.4 293 71.3
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 4.0e-90 335.5 293 64.8
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 2.6e-89 332.8 267 76.4
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 2.2e-88 329.7 292 71.9
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 2.9e-88 329.3 292 72.6
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 1.2e-86 323.9 302 70.5
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.7e-85 320.1 302 65.9
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.7e-85 320.1 302 65.9
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 3.1e-82 309.3 291 70.4
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 4.0e-82 308.9 258 74.8
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.0e-82 308.9 291 65.6
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 6.2e-75 285.0 284 63.7
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 7.6e-73 278.1 286 58.4
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 7.6e-73 278.1 286 58.4
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 2.9e-72 276.2 265 62.6
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 3.8e-72 275.8 285 60.7
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.9e-71 273.5 284 59.9
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.4e-71 273.1 258 60.5
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.2e-71 272.7 286 58.0
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 4.6e-70 268.9 268 63.4
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 4.6e-70 268.9 285 55.8
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.3e-69 267.3 260 59.6
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 8.7e-69 264.6 260 60.8
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 8.7e-69 264.6 280 56.8
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 1.5e-68 263.8 302 55.6
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 3.3e-68 262.7 264 58.3
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 4.3e-68 262.3 284 58.8
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.3e-68 262.3 288 59.7
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 5.6e-68 261.9 307 57.0
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 7.4e-68 261.5 280 56.4
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 7.4e-68 261.5 305 54.4
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 6.2e-67 258.5 277 57.0
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.4e-66 256.5 261 60.9
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 4.0e-66 255.8 286 54.9
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 6.9e-66 255.0 276 56.2
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 6.9e-66 255.0 260 57.3
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 9.0e-66 254.6 278 55.8
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.2e-65 254.2 282 58.9
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 1.2e-65 254.2 290 57.6
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 2.0e-65 253.4 275 56.4
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 4.5e-65 252.3 251 61.4
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 5.8e-65 251.9 290 56.9
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 1.0e-64 251.1 260 57.3
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 1.0e-64 251.1 304 55.6
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.8e-64 249.2 290 56.6
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.9e-64 248.8 291 54.0
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 8.4e-64 248.1 257 55.6
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 8.4e-64 248.1 282 54.6
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.9e-63 246.9 303 53.8
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 4.2e-63 245.7 261 57.1
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 5.5e-63 245.4 284 54.9
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 5.5e-63 245.4 276 55.8
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 5.5e-63 245.4 278 52.9
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 7.1e-63 245.0 303 56.1
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 7.1e-63 245.0 303 56.1
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 1.6e-62 243.8 286 57.3
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 1.6e-62 243.8 301 56.5
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 2.7e-62 243.0 279 55.9
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 7.9e-62 241.5 282 53.2
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 7.9e-62 241.5 284 53.5
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.0e-61 241.1 281 54.8
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 1.0e-61 241.1 253 58.5
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 3.0e-61 239.6 258 55.4
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 3.3e-60 236.1 275 57.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 3.3e-60 236.1 301 51.8
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 3.3e-60 236.1 289 53.3
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 5.7e-60 235.3 267 54.3
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 5.7e-60 235.3 253 59.3
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 5.7e-60 235.3 303 50.5
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 7.4e-60 235.0 262 54.2
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.1e-59 233.4 289 55.7
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 2.1e-59 233.4 276 56.5
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.8e-59 233.0 289 52.6
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 4.8e-59 232.3 255 54.5
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 1.1e-58 231.1 259 55.6
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 1.1e-58 231.1 256 55.1
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.4e-58 230.7 263 52.5
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.4e-58 230.7 398 44.7
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 3.1e-58 229.6 259 54.1
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 3.1e-58 229.6 280 56.1
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 6.9e-58 228.4 181 72.9
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 1.5e-57 227.3 276 54.7
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 5.9e-57 225.3 261 54.0
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.7e-56 223.8 255 53.7
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 3.2e-55 219.5 263 56.3
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 4.2e-55 219.2 217 64.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.6e-54 217.2 301 51.5
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.3e-53 214.2 288 49.7
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.3e-53 214.2 273 52.0
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.3e-53 213.4 274 50.7
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 2.3e-53 213.4 291 51.9
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.9e-53 212.6 279 55.2
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 1.9e-52 210.3 253 53.0
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 6.3e-51 205.3 248 50.8
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 2.4e-50 203.4 235 55.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 6.9e-50 201.8 270 46.7
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.2e-49 201.1 282 50.7
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 5.9e-49 198.7 289 43.9
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 2.9e-48 196.4 251 49.4
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.1e-47 194.5 299 46.8
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 9.4e-47 191.4 197 64.0
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 2.3e-45 186.8 261 51.3
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.0e-45 186.4 271 47.6
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.0e-44 183.7 275 47.6
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 5.7e-44 182.2 292 47.3
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 3.7e-43 179.5 267 45.7
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 8.2e-43 178.3 223 54.7
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 7.7e-41 171.8 239 48.5
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 5.5e-39 165.6 185 54.6
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 7.2e-39 165.2 162 57.4
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 2.7e-38 163.3 256 46.5
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 3.9e-37 159.5 251 43.8
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 2.0e-36 157.1 244 43.0
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 1.3e-35 154.5 233 45.5
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.7e-35 154.1 251 41.4
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 7.0e-34 148.7 241 41.1
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 9.1e-34 148.3 292 37.0
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 4.5e-33 146.0 293 36.9
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 5.9e-33 145.6 100 75.0
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-32 144.8 97 80.4
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 6.5e-32 142.1 157 56.7
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 6.1e-30 135.6 248 39.1
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 6.7e-29 132.1 278 35.6
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.2e-28 131.3 82 79.3
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 2.2e-27 127.1 233 39.9
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 9.8e-20 101.7 71 77.5
A02p05200 Brassica napus HOM05D059425 ORTHO05D041380 1.3e-16 91.3 77 62.3
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 9.8e-12 75.1 85 49.4
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 1.4e-10 71.2 72 51.4
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 2.7e-09 67.0 125 37.6
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 3.5e-09 66.6 57 63.2
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 6.6e-08 62.4 114 33.3
BolC5t32385H Brassica oleracea HOM05D005029 ORTHO05D006052 1.6e-06 57.8 36 77.8
C07p26820 Brassica napus HOM05D005029 ORTHO05D006052 8.0e-06 55.5 37 73.0


User provided reference genes

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