Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 6.1e-161 570.9 309 100.0
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 5.0e-155 551.2 309 97.4
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 5.6e-154 547.7 309 96.8
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 7.3e-154 547.4 309 96.8
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 3.6e-153 545.0 309 96.4
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 5.1e-139 498.0 314 85.0
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 2.5e-138 495.7 312 87.5
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 2.5e-138 495.7 312 87.5
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 6.2e-137 491.1 311 88.7
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 8.9e-136 487.3 312 85.9
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 8.9e-136 487.3 319 82.4
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 5.1e-131 471.5 313 81.2
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 3.4e-127 458.8 313 84.0
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 3.5e-124 448.7 313 82.7
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 6.0e-124 448.0 314 82.8
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 2.1e-121 439.5 313 79.6
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.9e-118 429.1 313 78.9
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 2.6e-111 406.0 313 73.8
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 5.6e-106 388.3 315 72.7
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 8.4e-94 347.8 311 60.5
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.2e-93 345.5 312 63.1
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 4.2e-93 345.5 312 62.8
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 4.2e-93 345.5 312 62.8
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 1.2e-92 344.0 307 62.9
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 7.9e-92 341.3 303 61.4
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 3.9e-91 339.0 307 61.9
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 5.1e-91 338.6 311 61.7
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 1.5e-90 337.0 311 60.8
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 1.5e-90 337.0 301 61.8
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 4.3e-90 335.5 303 62.7
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 9.7e-90 334.3 306 63.1
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 9.7e-90 334.3 314 59.2
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 1.3e-89 334.0 306 60.1
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 1.6e-89 333.6 314 61.5
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 3.7e-89 332.4 308 60.1
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 3.7e-89 332.4 303 60.7
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 4.8e-89 332.0 299 59.5
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 4.1e-88 328.9 307 59.9
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.9e-88 328.2 313 58.5
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.2e-87 327.4 310 59.7
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.2e-87 327.4 310 59.7
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 1.5e-87 327.0 307 59.9
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 2.0e-87 326.6 300 62.7
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 2.0e-87 326.6 310 57.7
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 2.0e-87 326.6 308 60.4
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 2.0e-87 326.6 311 57.9
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 2.0e-87 326.6 301 60.8
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 2.6e-87 326.2 304 61.2
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 3.4e-87 325.9 308 60.7
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.4e-87 325.9 310 59.4
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 3.4e-87 325.9 311 58.2
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 5.9e-87 325.1 310 59.0
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 7.7e-87 324.7 307 59.9
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 7.7e-87 324.7 313 60.4
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 1.0e-86 324.3 309 58.9
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 1.0e-86 324.3 310 59.0
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 1.7e-86 323.6 314 58.0
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 5.0e-86 322.0 308 59.7
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.1e-85 320.9 306 61.1
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 4.2e-85 318.9 308 57.8
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.2e-84 317.4 305 61.3
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.2e-84 317.4 305 61.3
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 2.7e-84 316.2 308 57.8
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.6e-84 315.8 312 58.0
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.0e-83 314.3 309 57.6
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 2.3e-83 313.2 287 61.7
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 5.1e-83 312.0 306 57.8
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 6.7e-83 311.6 313 57.8
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 2.5e-82 309.7 306 55.9
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 4.3e-82 308.9 309 56.6
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 7.4e-82 308.1 307 59.9
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 1.3e-81 307.4 312 58.0
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.8e-81 306.2 313 58.1
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 3.7e-81 305.8 311 59.5
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 3.7e-81 305.8 312 56.7
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.4e-80 303.9 307 57.0
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 1.4e-80 303.9 307 56.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.4e-80 303.9 307 57.0
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.4e-80 303.1 267 63.7
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 3.1e-80 302.8 306 55.6
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 9.1e-80 301.2 310 59.0
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 3.4e-79 299.3 297 56.6
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 7.7e-79 298.1 311 55.0
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.0e-78 297.7 298 50.7
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 1.0e-78 297.7 311 56.3
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 1.7e-78 297.0 271 57.9
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 2.9e-78 296.2 314 57.6
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 3.8e-78 295.8 308 58.1
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 5.0e-78 295.4 311 56.6
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 8.5e-78 294.7 306 57.2
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.4e-77 293.9 299 58.9
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 9.4e-77 291.2 311 57.9
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.6e-76 290.4 295 57.6
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 6.1e-76 288.5 248 63.7
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 1.0e-75 287.7 307 56.7
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 1.0e-75 287.7 249 63.5
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.8e-75 287.0 309 57.3
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 5.1e-75 285.4 313 52.7
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.0e-74 283.5 282 57.1
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 7.4e-74 281.6 367 49.9
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 1.7e-73 280.4 309 56.6
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 2.2e-73 280.0 313 53.7
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 6.3e-73 278.5 310 56.8
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 6.3e-73 278.5 314 53.5
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 6.3e-73 278.5 295 53.9
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 8.2e-73 278.1 308 51.3
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 1.1e-72 277.7 314 51.9
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.4e-72 277.3 308 52.3
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.4e-72 277.3 311 49.8
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.8e-72 276.9 306 52.0
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 7.0e-72 275.0 315 53.0
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 7.0e-72 275.0 315 48.9
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 2.2e-70 270.0 268 57.5
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 2.6e-66 256.5 277 54.5
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 4.4e-66 255.8 317 51.4
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 7.7e-63 245.0 268 54.1
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 1.0e-62 244.6 228 54.8
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 1.7e-62 243.8 310 51.3
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 5.0e-62 242.3 313 48.6
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 2.1e-60 236.9 322 50.6
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 5.2e-59 232.3 228 55.3
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 3.4e-58 229.6 235 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 1.4e-51 207.6 201 54.7
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 1.4e-48 197.6 312 44.2
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 1.3e-46 191.0 184 59.2
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 2.3e-43 180.3 253 41.9
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 3.0e-43 179.9 314 40.8
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 2.6e-34 150.2 209 43.5
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-32 144.4 98 72.4
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 1.5e-29 134.4 125 60.0
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 2.9e-25 120.2 197 35.5
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 9.2e-24 115.2 291 35.4
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 3.5e-23 113.2 236 30.1
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.1e-22 109.4 140 49.3
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 5.1e-22 109.4 140 49.3
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 3.3e-21 106.7 231 32.0
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 1.4e-19 101.3 68 66.2
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 8.9e-19 98.6 66 66.7
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 1.2e-18 98.2 119 54.6
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 3.8e-17 93.2 64 70.3
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.4e-16 91.3 69 66.7
Hma1.2p1_1881F.1_g306380 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 1.1e-13 81.6 52 69.2
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.4e-10 70.1 45 66.7
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 7.6e-10 68.9 50 62.0
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 7.6e-10 68.9 60 58.3
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 1.9e-08 64.3 102 51.0
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 3.2e-08 63.5 125 41.6
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 1.2e-07 61.6 39 69.2
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.6e-07 59.7 60 48.3
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 1.0e-06 58.5 44 68.2


User provided reference genes

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