Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 2.5e-90 335.5 181 100.0
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 2.5e-90 335.5 181 100.0
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 8.2e-89 330.5 181 98.9
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 4.5e-87 324.7 181 95.0
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 4.5e-87 324.7 181 95.0
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 1.4e-85 319.7 181 92.8
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 1.4e-85 319.7 181 92.8
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.8e-80 302.8 181 89.0
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 3.1e-80 302.0 181 87.8
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.1e-80 301.6 181 86.2
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 4.1e-80 301.6 180 87.8
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 9.1e-80 300.4 180 87.2
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 5.9e-79 297.7 181 86.7
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 5.9e-79 297.7 181 86.7
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 2.5e-77 292.4 180 87.8
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 7.2e-77 290.8 182 86.8
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 7.2e-77 290.8 182 86.8
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 1.6e-76 289.7 182 85.2
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.0e-75 287.0 182 85.7
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 8.8e-59 230.7 185 67.0
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-55 220.3 180 65.6
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.2e-50 203.8 185 60.5
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 4.1e-48 195.3 185 57.3
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 2.0e-34 149.8 193 50.3
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 2.0e-31 139.8 177 46.9
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 2.7e-31 139.4 187 48.7
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 3.5e-31 139.0 185 49.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 3.5e-31 139.0 185 48.1
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 7.8e-31 137.9 177 46.9
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.0e-30 137.5 189 48.1
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 1.0e-30 137.5 181 48.6
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 3.0e-30 136.0 182 47.8
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 1.1e-29 134.0 181 45.3
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 3.3e-29 132.5 184 46.7
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 3.3e-29 132.5 184 46.7
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 3.3e-29 132.5 188 45.7
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 7.3e-29 131.3 181 42.0
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 9.5e-29 131.0 184 46.7
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.6e-28 130.2 183 47.5
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 3.6e-28 129.0 189 45.5
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 3.6e-28 129.0 178 47.8
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.6e-28 129.0 185 46.5
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 6.2e-28 128.3 189 45.0
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 1.1e-27 127.5 182 46.7
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 1.1e-27 127.5 184 47.3
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 1.8e-27 126.7 185 45.9
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 4.0e-27 125.6 184 43.5
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 4.0e-27 125.6 189 45.5
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 6.8e-27 124.8 179 44.1
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 6.8e-27 124.8 190 43.7
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.8e-27 124.8 176 44.3
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 8.9e-27 124.4 180 45.0
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 8.9e-27 124.4 178 46.1
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.0e-26 123.2 183 44.8
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 4.4e-26 122.1 179 43.0
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 4.4e-26 122.1 183 47.0
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 7.5e-26 121.3 186 41.9
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.3e-25 120.6 181 43.6
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.3e-25 120.6 184 44.6
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 4.9e-25 118.6 174 45.4
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 6.4e-25 118.2 179 44.1
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.4e-25 118.2 182 45.1
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 8.3e-25 117.9 188 41.5
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.1e-24 117.5 179 44.1
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.9e-24 116.7 204 40.2
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 1.9e-24 116.7 183 42.6
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 4.1e-24 115.5 195 43.1
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 5.4e-24 115.2 188 42.0
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 5.4e-24 115.2 188 42.6
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 9.2e-24 114.4 184 41.3
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 1.2e-23 114.0 178 42.1
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 1.2e-23 114.0 181 44.2
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 1.2e-23 114.0 190 41.1
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 1.2e-23 114.0 188 39.9
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 2.7e-23 112.8 185 42.7
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 3.5e-23 112.5 178 45.5
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 6.0e-23 111.7 186 41.9
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.7e-22 110.2 181 40.9
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 1.7e-22 110.2 184 42.9
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 1.7e-22 110.2 188 41.5
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 6.6e-22 108.2 176 42.0
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 1.9e-21 106.7 180 42.2
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 2.5e-21 106.3 175 44.0
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 4.3e-21 105.5 185 42.2
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 9.5e-21 104.4 188 39.4
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 2.1e-20 103.2 188 36.7
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 2.1e-20 103.2 181 38.7
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 2.8e-20 102.8 176 37.5
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.7e-20 102.1 182 38.5
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 4.7e-20 102.1 180 41.7
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 6.2e-20 101.7 180 37.2
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 6.2e-20 101.7 186 37.1
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 8.1e-20 101.3 188 38.8
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 8.1e-20 101.3 190 38.9
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 1.1e-19 100.9 177 40.1
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.1e-19 100.9 176 37.5
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 1.4e-19 100.5 180 38.3
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 1.4e-19 100.5 192 35.9
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.3e-19 99.8 172 40.1
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 6.8e-19 98.2 185 38.9
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.0e-18 96.7 190 40.5
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 2.0e-18 96.7 187 38.0
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 2.6e-18 96.3 186 35.5
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 7.5e-18 94.7 183 36.1
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 9.9e-18 94.4 148 45.3
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.3e-17 94.0 166 35.5
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 8.3e-17 91.3 166 39.8
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 1.1e-16 90.9 162 38.9
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 3.2e-16 89.4 183 35.5
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 3.2e-16 89.4 172 35.5
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 4.1e-16 89.0 171 34.5
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 5.4e-16 88.6 184 39.7
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 5.4e-16 88.6 159 40.3
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 7.1e-16 88.2 186 34.9
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 9.2e-16 87.8 157 43.9
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 1.2e-15 87.4 178 37.1
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 1.2e-15 87.4 148 41.9
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 3.5e-15 85.9 178 36.5
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.5e-15 85.9 171 36.3
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.5e-15 85.9 171 36.3
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 3.5e-15 85.9 160 41.2
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 4.6e-15 85.5 171 35.7
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 4.6e-15 85.5 171 35.7
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.0e-15 85.1 171 33.9
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 1.3e-14 84.0 154 41.6
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 2.3e-14 83.2 170 37.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 3.0e-14 82.8 171 35.1
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 3.0e-14 82.8 149 38.9
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 3.0e-14 82.8 172 36.0
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 5.1e-14 82.0 171 32.7
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 1.9e-13 80.1 149 38.3
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 2.5e-13 79.7 174 33.3
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 3.3e-13 79.3 95 48.4
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 1.2e-12 77.4 154 38.3
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-12 77.4 133 37.6
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 2.1e-12 76.6 183 37.7
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.1e-11 74.3 165 32.1
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.4e-11 73.9 151 37.7
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 5.2e-11 72.0 151 34.4
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 6.8e-11 71.6 178 32.0
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 1.2e-10 70.9 119 39.5
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 1.5e-10 70.5 186 32.3
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 1.7e-09 67.0 181 33.7
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 3.8e-09 65.9 93 40.9
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 4.9e-09 65.5 191 31.4
SEGI_25117 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 6.0e-07 58.5 197 32.0
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 3.9e-06 55.8 153 34.0
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 5.1e-06 55.5 146 32.9


User provided reference genes

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