Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 1.4e-96 356.3 183 100.0
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 2.3e-54 216.1 151 80.8
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 5.1e-54 214.9 150 82.7
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 8.6e-54 214.2 152 81.6
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 2.5e-53 212.6 147 81.6
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.5e-53 212.6 141 85.1
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 4.3e-53 211.8 150 81.3
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 1.6e-52 209.9 176 71.0
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 6.2e-52 208.0 147 77.6
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 6.2e-52 208.0 147 77.6
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 6.2e-52 208.0 147 77.6
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 6.2e-52 208.0 147 77.6
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 6.2e-52 208.0 113 95.6
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 8.1e-52 207.6 179 69.8
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 8.1e-52 207.6 168 72.6
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 2.4e-51 206.1 173 72.8
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 6.8e-51 204.5 165 70.9
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 1.2e-50 203.8 113 92.0
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 1.5e-50 203.4 113 92.0
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 2.0e-50 203.0 113 92.9
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 2.0e-50 203.0 113 92.9
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 2.6e-50 202.6 113 92.0
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 3.4e-50 202.2 147 76.2
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 3.4e-50 202.2 113 92.9
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 4.4e-50 201.8 176 69.9
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 4.4e-50 201.8 113 90.3
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 4.4e-50 201.8 141 80.1
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 5.8e-50 201.4 113 91.2
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 7.6e-50 201.1 112 92.9
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 7.6e-50 201.1 147 78.9
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 9.9e-50 200.7 113 90.3
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 1.3e-49 200.3 113 92.0
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.7e-49 199.9 113 90.3
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 1.7e-49 199.9 113 90.3
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 2.2e-49 199.5 164 70.7
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 2.2e-49 199.5 113 89.4
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 2.2e-49 199.5 112 90.2
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 2.2e-49 199.5 113 90.3
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 2.9e-49 199.1 149 78.5
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 2.9e-49 199.1 113 89.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 2.9e-49 199.1 113 89.4
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.8e-49 198.7 113 90.3
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 3.8e-49 198.7 113 88.5
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.9e-49 198.4 113 89.4
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.9e-49 198.4 113 88.5
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 4.9e-49 198.4 113 88.5
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 4.9e-49 198.4 113 90.3
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 4.9e-49 198.4 113 90.3
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 8.4e-49 197.6 113 89.4
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 8.4e-49 197.6 113 91.2
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.1e-48 197.2 112 89.3
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.1e-48 197.2 112 89.3
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 1.4e-48 196.8 165 69.7
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 1.4e-48 196.8 113 87.6
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.4e-48 196.8 113 90.3
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 1.9e-48 196.4 112 87.5
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 2.4e-48 196.1 113 87.6
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 4.1e-48 195.3 113 88.5
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 4.1e-48 195.3 112 88.4
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 4.1e-48 195.3 113 87.6
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 4.1e-48 195.3 113 87.6
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 5.4e-48 194.9 113 88.5
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 7.1e-48 194.5 113 88.5
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 7.1e-48 194.5 113 87.6
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 7.1e-48 194.5 127 79.5
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 7.1e-48 194.5 157 70.7
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 7.1e-48 194.5 112 89.3
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 9.2e-48 194.1 112 88.4
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 9.2e-48 194.1 112 88.4
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 9.2e-48 194.1 112 88.4
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 9.2e-48 194.1 112 87.5
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 9.2e-48 194.1 112 87.5
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 9.2e-48 194.1 113 86.7
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 9.2e-48 194.1 113 88.5
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 1.2e-47 193.7 111 88.3
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 1.2e-47 193.7 110 90.0
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 1.6e-47 193.4 109 92.7
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 1.6e-47 193.4 113 87.6
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 1.6e-47 193.4 128 78.9
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.6e-47 193.4 113 89.4
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.1e-47 193.0 113 86.7
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 2.7e-47 192.6 112 86.6
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 2.7e-47 192.6 113 88.5
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 2.7e-47 192.6 127 79.5
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 4.6e-47 191.8 112 88.4
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 6.0e-47 191.4 138 78.3
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 6.0e-47 191.4 168 67.3
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 6.0e-47 191.4 112 86.6
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 6.0e-47 191.4 112 86.6
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 6.0e-47 191.4 112 86.6
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.0e-47 191.4 113 86.7
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 7.8e-47 191.0 112 86.6
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 7.8e-47 191.0 112 84.8
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 1.0e-46 190.7 107 89.7
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 1.7e-46 189.9 113 86.7
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.7e-46 189.9 112 83.9
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.7e-46 189.9 112 85.7
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.3e-46 189.5 109 87.2
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 2.3e-46 189.5 109 87.2
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.3e-46 189.5 109 87.2
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 3.0e-46 189.1 134 76.1
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 3.0e-46 189.1 110 87.3
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.0e-46 189.1 113 85.8
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 3.0e-46 189.1 112 83.0
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.9e-46 188.7 112 85.7
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 3.9e-46 188.7 112 85.7
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 3.9e-46 188.7 112 85.7
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 5.1e-46 188.3 109 86.2
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 5.1e-46 188.3 109 86.2
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 6.6e-46 188.0 108 88.0
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 6.6e-46 188.0 112 83.0
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 6.6e-46 188.0 113 85.8
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 6.6e-46 188.0 113 85.0
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 8.7e-46 187.6 112 86.6
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 8.7e-46 187.6 113 86.7
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 1.1e-45 187.2 113 85.8
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 1.5e-45 186.8 159 68.6
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 1.9e-45 186.4 113 85.8
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 2.5e-45 186.0 109 85.3
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 5.6e-45 184.9 113 82.3
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 7.3e-45 184.5 107 86.9
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 9.6e-45 184.1 113 83.2
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 8.1e-44 181.0 110 82.7
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 8.1e-44 181.0 111 82.0
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 1.1e-43 180.6 142 71.1
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 2.4e-43 179.5 110 81.8
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 5.2e-43 178.3 113 82.3
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 6.9e-43 177.9 107 87.9
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 9.0e-43 177.6 178 59.0
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 2.0e-42 176.4 163 64.4
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 4.4e-42 175.3 107 84.1
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 2.9e-41 172.6 121 79.3
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 6.4e-41 171.4 108 77.8
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 5.4e-40 168.3 106 79.2
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 2.1e-39 166.4 110 70.9
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.7e-38 163.3 130 65.4
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.1e-37 160.6 110 72.7
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 1.1e-37 160.6 149 60.4
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 1.5e-37 160.2 134 61.2
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 2.8e-36 156.0 110 70.9
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 2.8e-36 156.0 113 73.5
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 3.6e-36 155.6 105 74.3
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 1.1e-35 154.1 119 71.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.0e-35 152.1 112 73.2
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 4.0e-35 152.1 112 73.2
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 5.3e-35 151.8 110 70.0
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 9.9e-34 147.5 92 81.5
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 4.9e-33 145.2 107 72.0
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 6.0e-31 138.3 80 87.5
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 1.8e-30 136.7 87 78.2
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 2.3e-30 136.3 109 62.4
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.5e-29 133.7 113 69.0
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 4.3e-29 132.1 113 66.4
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 9.0e-27 124.4 69 88.4
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 5.8e-26 121.7 91 74.7
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 1.7e-25 120.2 265 34.3
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 4.9e-25 118.6 86 75.6
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.9e-24 116.7 91 72.5
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 1.9e-24 116.7 87 77.0
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 1.2e-23 114.0 87 75.9
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 1.2e-23 114.0 87 75.9
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 6.0e-23 111.7 104 55.8
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 3.7e-20 102.4 90 65.6
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 1.9e-16 90.1 47 95.7
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 9.3e-16 87.8 49 89.8
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 1.0e-14 84.3 69 69.6
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.1e-14 82.0 44 90.9
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 1.5e-13 80.5 70 60.0
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 7.4e-13 78.2 44 88.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 8.5e-09 64.7 38 84.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 5.5e-08 62.0 48 72.9


User provided reference genes

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