Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 6.8e-75 283.9 140 100.0
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.5e-50 203.0 102 97.1
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 1.6e-47 193.0 204 54.4
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 3.0e-46 188.7 206 53.9
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 8.6e-46 187.2 208 54.8
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 8.6e-46 187.2 208 54.8
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 3.3e-45 185.3 205 54.6
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 3.3e-45 185.3 205 54.6
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 4.3e-45 184.9 205 54.1
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 4.3e-45 184.9 205 54.1
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-44 183.3 208 53.8
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-44 183.0 208 53.8
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.6e-44 183.0 208 53.8
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.6e-44 183.0 208 53.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 3.6e-44 181.8 208 53.4
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 6.2e-44 181.0 205 53.7
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 1.1e-43 180.3 209 52.6
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 2.0e-42 176.0 93 90.3
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 4.4e-42 174.9 93 90.3
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.7e-41 172.9 93 87.1
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 3.5e-39 165.2 204 48.5
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.9e-37 159.5 208 48.1
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 2.8e-36 155.6 93 77.4
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 2.8e-36 155.6 93 78.5
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 4.8e-36 154.8 93 78.5
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 4.8e-36 154.8 93 78.5
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 4.8e-36 154.8 93 77.4
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 1.4e-35 153.3 93 76.3
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 4.0e-35 151.8 93 76.3
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 5.3e-35 151.4 93 75.3
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.9e-35 151.0 94 78.7
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 6.9e-35 151.0 94 78.7
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 9.0e-35 150.6 93 74.2
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.2e-34 150.2 93 77.4
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 4.5e-34 148.3 94 76.6
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 5.8e-34 147.9 94 75.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 5.8e-34 147.9 93 75.3
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 5.8e-34 147.9 93 74.2
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 9.9e-34 147.1 93 72.0
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 1.3e-33 146.7 93 73.1
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 1.3e-33 146.7 94 77.7
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.7e-33 146.4 93 72.0
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 2.2e-33 146.0 93 73.1
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.2e-33 146.0 93 75.3
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 2.2e-33 146.0 93 72.0
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.9e-33 145.6 94 74.5
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.9e-33 144.8 94 72.3
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 4.9e-33 144.8 94 74.5
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 4.9e-33 144.8 94 74.5
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 6.4e-33 144.4 93 72.0
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 6.4e-33 144.4 94 73.4
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 8.4e-33 144.1 93 71.0
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 1.4e-32 143.3 94 75.5
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.4e-32 143.3 93 71.0
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.9e-32 142.9 94 71.3
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 1.9e-32 142.9 95 71.6
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.9e-32 142.9 94 74.5
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.9e-32 142.9 93 74.2
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 1.9e-32 142.9 93 71.0
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 3.2e-32 142.1 93 69.9
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.2e-32 141.7 93 69.9
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 4.2e-32 141.7 94 72.3
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 4.2e-32 141.7 93 71.0
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 4.2e-32 141.7 93 75.3
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 5.4e-32 141.4 93 68.8
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.1e-32 141.0 93 72.0
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 9.3e-32 140.6 93 68.8
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 9.3e-32 140.6 93 71.0
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 9.3e-32 140.6 93 69.9
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.6e-31 139.8 93 69.9
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.6e-31 139.8 91 73.6
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 2.1e-31 139.4 94 70.2
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 2.1e-31 139.4 96 72.9
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 2.7e-31 139.0 93 71.0
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 3.5e-31 138.7 93 69.9
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.5e-31 138.7 93 71.0
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 3.5e-31 138.7 93 71.0
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 4.6e-31 138.3 93 68.8
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 4.6e-31 138.3 93 71.0
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 6.0e-31 137.9 93 65.6
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 7.9e-31 137.5 93 67.7
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 7.9e-31 137.5 93 69.9
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 7.9e-31 137.5 94 71.3
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.0e-30 137.1 93 69.9
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.0e-30 137.1 94 67.0
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 1.0e-30 137.1 93 67.7
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 1.0e-30 137.1 94 72.3
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.3e-30 136.7 94 68.1
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 1.3e-30 136.7 93 66.7
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 1.8e-30 136.3 94 68.1
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 2.3e-30 136.0 92 69.6
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 3.9e-30 135.2 93 66.7
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 5.1e-30 134.8 91 69.2
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 6.7e-30 134.4 96 68.8
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.7e-30 134.0 94 71.3
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 8.7e-30 134.0 94 71.3
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 8.7e-30 134.0 95 66.3
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.5e-29 133.3 94 69.1
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.5e-29 133.3 94 69.1
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 2.5e-29 132.5 94 68.1
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 2.5e-29 132.5 94 68.1
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 3.3e-29 132.1 113 58.4
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 4.3e-29 131.7 96 66.7
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 5.6e-29 131.3 96 67.7
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 5.6e-29 131.3 96 67.7
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 5.6e-29 131.3 94 68.1
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 9.6e-29 130.6 94 68.1
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 1.6e-28 129.8 94 67.0
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 2.8e-28 129.0 113 57.5
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 2.8e-28 129.0 94 67.0
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 1.1e-27 127.1 113 55.8
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 3.4e-26 122.1 93 65.6
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 4.5e-26 121.7 113 54.0
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 4.9e-25 118.2 95 60.0
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 4.9e-25 118.2 95 60.0
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 6.4e-25 117.9 92 58.7
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.1e-24 117.1 95 60.0
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 1.9e-24 116.3 95 58.9
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 3.2e-24 115.5 76 71.1
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 1.1e-21 107.1 63 77.8
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.1e-21 107.1 63 77.8
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 4.3e-21 105.1 64 73.4
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 8.1e-20 100.9 64 71.9
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 4.0e-19 98.6 210 33.8
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 6.9e-19 97.8 61 70.5
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 6.9e-19 97.8 60 76.7
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 1.5e-18 96.7 180 35.0
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 2.6e-18 95.9 63 66.7
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 2.7e-15 85.9 60 68.3
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 9.6e-13 77.4 93 43.0
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 1.4e-11 73.6 59 59.3
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 5.3e-11 71.6 46 63.0
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 2.0e-10 69.7 54 55.6
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 4.5e-10 68.6 48 68.8
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 2.2e-09 66.2 56 55.4
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 3.8e-09 65.5 121 39.7
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 3.8e-09 65.5 121 39.7
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.4e-08 63.5 42 66.7
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 1.9e-08 63.2 35 80.0
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 7.2e-08 61.2 36 75.0
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.1e-07 59.7 38 68.4
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 2.1e-07 59.7 34 76.5
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 4.6e-07 58.5 34 76.5
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 6.1e-07 58.2 33 78.8
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.3e-06 57.0 34 70.6


User provided reference genes

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