Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 3.8e-148 528.1 256 100.0
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 4.9e-148 527.7 255 100.0
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 2.8e-135 485.3 262 93.1
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 4.1e-126 454.9 297 79.1
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 1.4e-123 446.4 294 78.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.5e-115 419.1 297 76.4
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 5.7e-112 407.9 297 72.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.6e-109 399.8 296 69.9
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 3.0e-105 385.6 301 68.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 8.8e-105 384.0 295 67.8
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.5e-104 383.3 302 67.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 7.5e-104 380.9 295 67.8
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 2.2e-103 379.4 302 66.9
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.8e-103 379.0 302 67.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 3.1e-102 375.6 302 65.9
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 5.5e-99 364.8 293 64.2
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.2e-98 363.6 296 63.5
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 8.8e-97 357.5 292 63.0
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.8e-86 323.2 315 55.9
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.7e-71 273.5 286 55.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 8.3e-71 271.2 317 48.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.4e-70 270.4 231 58.0
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.9e-70 270.0 233 58.4
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 5.4e-70 268.5 319 49.8
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.2e-69 267.3 306 49.3
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.2e-69 267.3 318 48.1
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.7e-68 263.5 315 47.6
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.7e-68 263.5 315 47.6
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 5.1e-68 261.9 315 47.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.1e-68 261.9 320 46.2
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 6.6e-68 261.5 322 46.6
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.6e-68 261.5 246 53.3
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.5e-67 259.6 311 47.9
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.5e-67 259.6 246 53.3
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 4.3e-67 258.8 264 51.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.6e-67 258.5 315 47.3
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 5.6e-67 258.5 315 47.3
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 5.6e-67 258.5 301 45.8
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 7.3e-67 258.1 290 47.2
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-66 257.3 322 46.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 1.2e-66 257.3 322 46.6
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-66 256.9 304 48.4
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.6e-66 256.9 248 53.6
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.1e-66 256.5 311 45.3
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.6e-66 255.8 304 46.7
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 3.6e-66 255.8 230 54.8
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 8.1e-66 254.6 222 55.4
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.1e-65 254.2 253 52.2
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.1e-65 254.2 325 45.8
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.4e-65 253.8 240 53.8
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.8e-65 253.4 297 47.8
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.8e-65 253.4 317 46.1
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.2e-65 251.9 241 52.3
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 6.8e-65 251.5 231 51.5
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 6.8e-65 251.5 229 53.7
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 8.9e-65 251.1 222 54.5
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.5e-64 250.4 243 53.1
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.4e-64 249.2 312 46.2
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 3.4e-64 249.2 259 52.9
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 4.4e-64 248.8 312 46.5
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 5.8e-64 248.4 302 47.0
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 7.5e-64 248.1 252 52.0
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 7.5e-64 248.1 309 46.3
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.2e-63 246.5 234 50.4
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 2.2e-63 246.5 314 45.2
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.9e-63 246.1 228 53.9
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.9e-63 245.4 281 48.8
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 4.9e-63 245.4 229 52.0
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 6.4e-63 245.0 314 44.9
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 8.3e-63 244.6 252 50.4
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 8.3e-63 244.6 252 51.6
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.9e-62 243.4 228 52.6
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 3.2e-62 242.7 227 54.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 4.1e-62 242.3 326 43.3
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 7.1e-62 241.5 301 47.2
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.2e-61 240.7 226 52.7
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 1.6e-61 240.4 295 46.1
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.1e-61 240.0 244 50.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.1e-61 240.0 288 47.2
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.1e-61 240.0 315 45.1
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.1e-61 240.0 229 50.2
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 2.1e-61 240.0 284 46.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 3.5e-61 239.2 289 46.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.6e-61 238.8 226 53.1
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 6.0e-61 238.4 312 43.6
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.3e-60 237.3 312 44.6
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.7e-60 236.9 279 44.8
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.3e-60 236.5 226 52.7
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 3.0e-60 236.1 304 46.4
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.9e-60 235.7 313 46.0
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 5.1e-60 235.3 229 51.5
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 6.6e-60 235.0 220 53.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 8.6e-60 234.6 309 42.7
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.1e-59 234.2 228 51.3
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.9e-59 233.4 237 48.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 2.5e-59 233.0 226 50.4
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.5e-59 233.0 319 42.6
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 3.3e-59 232.6 227 50.7
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 3.3e-59 232.6 227 52.4
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 5.6e-59 231.9 227 50.2
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 7.3e-59 231.5 256 47.7
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 9.5e-59 231.1 318 44.0
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.2e-58 230.7 318 42.5
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.2e-58 230.7 277 44.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.6e-58 230.3 319 43.6
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.1e-58 229.9 318 42.1
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 2.8e-58 229.6 240 48.8
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 3.6e-58 229.2 277 44.8
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 6.2e-58 228.4 224 48.7
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.1e-57 227.6 229 50.7
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.4e-57 227.3 232 48.7
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 1.8e-57 226.9 268 47.0
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.0e-56 223.4 217 50.7
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.4e-56 222.2 244 48.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 5.8e-56 221.9 233 48.5
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 5.8e-56 221.9 256 47.3
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.7e-55 220.3 305 43.3
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.9e-55 219.5 222 49.5
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.8e-55 219.2 244 46.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 4.9e-55 218.8 255 48.6
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 6.4e-55 218.4 314 44.9
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 8.4e-55 218.0 346 39.0
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 8.4e-55 218.0 346 39.0
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.4e-54 216.5 169 66.3
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.2e-53 214.2 349 39.0
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 2.7e-53 213.0 243 46.5
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 6.0e-53 211.8 276 45.3
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.0e-52 211.1 234 45.7
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.3e-52 209.9 237 44.7
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.0e-52 209.5 250 44.4
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.1e-51 207.6 256 45.3
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.1e-51 207.6 286 41.3
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.5e-51 206.5 337 38.6
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.3e-51 206.1 239 43.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.1e-50 203.4 239 43.1
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 2.8e-50 203.0 226 46.5
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.1e-49 199.5 250 43.6
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 6.9e-49 198.4 224 47.3
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.4e-46 189.9 231 43.7
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.4e-46 189.9 231 43.7
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.6e-45 187.2 231 43.3
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.6e-42 177.2 309 39.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.6e-42 177.2 292 35.3
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.1e-42 176.8 231 39.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.4e-41 173.3 140 55.0
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.4e-38 164.1 245 41.2
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 7.1e-38 161.8 256 39.8
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 6.7e-36 155.2 107 68.2
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 6.7e-36 155.2 250 36.8
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.4e-33 146.7 170 43.5
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 8.4e-31 138.3 120 52.5
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 3.5e-29 132.9 212 37.7
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 1.0e-28 131.3 116 50.0
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 1.2e-24 117.9 211 33.6
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.7e-23 114.0 119 50.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 3.8e-23 112.8 140 43.6
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-22 110.9 136 43.4
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 5.5e-22 109.0 117 45.3
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.1e-20 102.4 149 42.3
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.5e-19 100.9 242 30.6
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 9.7e-19 98.2 76 56.6
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 2.2e-18 97.1 203 35.5
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.0e-15 88.2 112 38.4
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 2.9e-15 86.7 120 42.5
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 2.9e-15 86.7 79 55.7
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 5.0e-15 85.9 133 40.6
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.4e-14 84.3 147 32.7
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 3.2e-14 83.2 70 51.4
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 5.5e-14 82.4 70 50.0
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 7.2e-14 82.0 101 47.5
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 2.7e-13 80.1 251 28.7
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 1.8e-12 77.4 105 37.1
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 2.4e-09 67.0 138 30.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 1.2e-08 64.7 108 34.3
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.5e-06 57.0 55 45.5


User provided reference genes

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