Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01065 Brassica carinata HOM05D039526 ORTHO05D016711 9.4e-68 260.0 126 100.0
C03p87600 Brassica napus HOM05D000226 ORTHO05D016711 1.3e-45 186.4 94 96.8
BolC3t21078H Brassica oleracea HOM05D000226 ORTHO05D016711 1.3e-45 186.4 94 96.8
BcaC09g49203 Brassica carinata HOM05D039526 ORTHO05D016711 9.0e-18 94.0 61 77.0
C01p41430 Brassica napus HOM05D039526 ORTHO05D016711 9.0e-18 94.0 61 77.0
BcaC07g41851 Brassica carinata HOM05D000765 ORTHO05D000613 9.3e-15 84.0 77 64.9
A09p65240 Brassica napus HOM05D000765 ORTHO05D000613 1.2e-14 83.6 77 64.9
C08p49190 Brassica napus HOM05D000765 ORTHO05D000613 1.2e-14 83.6 77 64.9
BolC8t52454H Brassica oleracea HOM05D000765 ORTHO05D000613 1.2e-14 83.6 77 64.9
BraA09t41869Z Brassica rapa HOM05D000765 ORTHO05D000613 1.2e-14 83.6 77 64.9
Carub.0001s0939 Capsella rubella HOM05D000765 ORTHO05D000613 1.3e-13 80.1 77 62.3
CARHR010080 Cardamine hirsuta HOM05D000765 ORTHO05D000613 2.3e-13 79.3 77 61.0
Sp1g08620 Schrenkiella parvula HOM05D000765 ORTHO05D000613 2.3e-13 79.3 77 61.0
AL1G20590 Arabidopsis lyrata HOM05D000765 ORTHO05D000613 5.1e-13 78.2 77 61.0
AT1G09960 Arabidopsis thaliana HOM05D000765 ORTHO05D000613 6.6e-13 77.8 77 59.7
A06p06660 Brassica napus HOM05D000765 ORTHO05D000613 2.5e-12 75.9 77 58.4
C05p08120 Brassica napus HOM05D000765 ORTHO05D000613 2.5e-12 75.9 77 58.4
BolC5t29565H Brassica oleracea HOM05D000765 ORTHO05D000613 2.5e-12 75.9 77 58.4
BraA06t23880Z Brassica rapa HOM05D000765 ORTHO05D000613 2.5e-12 75.9 77 58.4
Aa31LG1G4920 Aethionema arabicum HOM05D000765 ORTHO05D000613 3.6e-11 72.0 77 54.5
Thhalv10007390m.g Eutrema salsugineum HOM05D000765 ORTHO05D000613 3.6e-11 72.0 77 55.8
THA.LOC104823687 Tarenaya hassleriana HOM05D000765 ORTHO05D000613 5.3e-10 68.2 59 59.3
THA.LOC104816782 Tarenaya hassleriana HOM05D000765 ORTHO05D000613 1.2e-09 67.0 59 59.3
A01p15890 Brassica napus HOM05D001049 ORTHO05D001986 2.0e-09 66.2 52 67.3
BraA01t01523Z Brassica rapa HOM05D001049 ORTHO05D001986 2.0e-09 66.2 52 67.3
BcaC05g24824 Brassica carinata HOM05D000765 ORTHO05D000613 5.8e-09 64.7 52 67.3
Dinv44902 Davidia involucrata HOM05D000765 ORTHO05D000613 7.6e-09 64.3 64 54.7
A03p55340 Brassica napus HOM05D001049 ORTHO05D001986 2.2e-08 62.8 52 61.5
Lj4C81G3 Lonicera japonica HOM05D000765 ORTHO05D000613 2.2e-08 62.8 60 56.7
Sed0021940 Sechium edule HOM05D000765 ORTHO05D000613 2.2e-08 62.8 75 45.3
BolC7t45855H Brassica oleracea HOM05D001049 ORTHO05D001986 2.9e-08 62.4 52 61.5
BraA03t14593Z Brassica rapa HOM05D001049 ORTHO05D001986 2.9e-08 62.4 52 61.5
BcaC09g50859 Brassica carinata HOM05D001049 ORTHO05D001986 3.8e-08 62.0 53 60.4
C01p19840 Brassica napus HOM05D001049 ORTHO05D001986 3.8e-08 62.0 53 60.4
BolC1t01911H Brassica oleracea HOM05D001049 ORTHO05D001986 3.8e-08 62.0 53 60.4
CSS0035934 Camellia sinensis var. sinensis HOM05D000765 ORTHO05D000613 3.8e-08 62.0 77 46.8
FAN04G2223 Fragaria x ananassa HOM05D000765 ORTHO05D000613 6.4e-08 61.2 50 62.0
Sp7g22520 Schrenkiella parvula HOM05D001049 ORTHO05D001986 6.4e-08 61.2 52 59.6
BcaC06g32879 Brassica carinata HOM05D001049 ORTHO05D001986 8.4e-08 60.8 51 60.8
C07p53630 Brassica napus HOM05D001049 ORTHO05D001986 8.4e-08 60.8 51 60.8
AL7G28700 Arabidopsis lyrata HOM05D001049 ORTHO05D001986 1.1e-07 60.5 51 58.8
BcaC09g50860 Brassica carinata HOM05D001049 ORTHO05D001986 1.4e-07 60.1 50 62.0
Sp7g22510 Schrenkiella parvula HOM05D001049 ORTHO05D001986 1.4e-07 60.1 52 57.7
BcaC04g20714 Brassica carinata HOM05D017615 ORTHO05D017630 1.9e-07 59.7 48 66.7
C07p29110 Brassica napus HOM05D000055 ORTHO05D017630 1.9e-07 59.7 48 66.7
C09p39980 Brassica napus HOM05D017615 ORTHO05D017630 1.9e-07 59.7 48 66.7
BolC7t43451H Brassica oleracea HOM05D017615 ORTHO05D017630 1.9e-07 59.7 48 66.7
BolC9t56894H Brassica oleracea HOM05D017615 ORTHO05D017630 1.9e-07 59.7 48 66.7
CARHR231920 Cardamine hirsuta HOM05D001049 ORTHO05D001986 1.9e-07 59.7 52 55.8
Hma1.2p1_1281F.1_g272670 Hydrangea macrophylla HOM05D000765 ORTHO05D000613 1.9e-07 59.7 77 48.1
CsaV3_2G030550 Cucumis sativus L. HOM05D000765 ORTHO05D000613 2.4e-07 59.3 77 45.5
Carub.0007s1655 Capsella rubella HOM05D001049 ORTHO05D001986 3.2e-07 58.9 51 56.9
Cpa.g.sc394.3 Carica papaya HOM05D000765 ORTHO05D000613 3.2e-07 58.9 50 58.0
Dinv22026 Davidia involucrata HOM05D000765 ORTHO05D000613 3.2e-07 58.9 78 46.2
Duzib116G0129 Durio zibethinus HOM05D000765 ORTHO05D000613 3.2e-07 58.9 77 45.5
FAN08G3222 Fragaria x ananassa HOM05D000765 ORTHO05D000613 3.2e-07 58.9 50 60.0
Haze_19006 Corylus avellana HOM05D000765 ORTHO05D000613 4.2e-07 58.5 64 50.0
MELO3C011115.2 Cucumis melo HOM05D000765 ORTHO05D000613 4.2e-07 58.5 77 42.9
PGR083G2244 Punica granatum HOM05D000765 ORTHO05D000613 4.2e-07 58.5 77 46.8
Rhsim06G0068100 Rhododendron simsii HOM05D000765 ORTHO05D000613 4.2e-07 58.5 60 53.3
RcHm_v2.0_Chr7g0232631 Rosa chinensis HOM05D000765 ORTHO05D000613 4.2e-07 58.5 50 58.0
CiPaw.15G152500 Carya illinoinensis HOM05D000765 ORTHO05D000613 7.1e-07 57.8 77 45.5
Sabra02G0084000 Salix brachista HOM05D000765 ORTHO05D000613 7.1e-07 57.8 63 50.8
Duzib041G0686 Durio zibethinus HOM05D000765 ORTHO05D000613 9.3e-07 57.4 77 44.2
Potri.002G106900 Populus trichocarpa HOM05D000765 ORTHO05D000613 9.3e-07 57.4 63 50.8
Gohir.A05G215200 Gossypium hirsutum HOM05D000765 ORTHO05D000613 1.2e-06 57.0 57 52.6
MD08G1209900 Malus domestica HOM05D000765 ORTHO05D000613 1.2e-06 57.0 50 62.0
AT4G24520 Arabidopsis thaliana HOM05D001049 ORTHO05D001986 1.6e-06 56.6 51 54.9
arahy.Tifrunner.gnm1.ann1.5UJ4FC Arachis hypogaea HOM05D000765 ORTHO05D000613 1.6e-06 56.6 52 55.8
arahy.Tifrunner.gnm1.ann1.RC8J31 Arachis hypogaea HOM05D000765 ORTHO05D000613 1.6e-06 56.6 52 55.8
Ca_15551_v3 Cicer arietinum L. HOM05D000765 ORTHO05D000613 1.6e-06 56.6 60 50.0
ClCG08G011940 Citrullus lanatus HOM05D000765 ORTHO05D000613 1.6e-06 56.6 75 41.3
Gohir.A06G028833 Gossypium hirsutum HOM05D000765 ORTHO05D000613 1.6e-06 56.6 57 52.6
Gohir.D06G027500 Gossypium hirsutum HOM05D000765 ORTHO05D000613 1.6e-06 56.6 57 52.6
Gorai.010G030700 Gossypium raimondii HOM05D000765 ORTHO05D000613 1.6e-06 56.6 57 52.6
LjContig00408g0005246 Lotus japonicus HOM05D000765 ORTHO05D000613 1.6e-06 56.6 54 53.7
MD15G1394000 Malus domestica HOM05D000765 ORTHO05D000613 1.6e-06 56.6 44 65.9
MSTRG.935 Avicennia marina HOM05D000765 ORTHO05D000613 2.1e-06 56.2 77 44.2
THA.LOC104799789 Tarenaya hassleriana HOM05D001049 ORTHO05D001986 2.1e-06 56.2 52 50.0
Lj1g0002965 Lotus japonicus HOM05D000765 ORTHO05D000613 2.7e-06 55.8 55 52.7
TWI12G0941 Tripterygium wilfordii HOM05D000765 ORTHO05D000613 2.7e-06 55.8 41 65.9
Actinidia29644 Actinidia chinensis HOM05D000765 ORTHO05D000613 3.5e-06 55.5 63 52.4
Aqoxy5G01950 Aquilegia oxysepala HOM05D000765 ORTHO05D000613 3.5e-06 55.5 77 40.3
BraA05t21593Z Brassica rapa HOM05D017615 ORTHO05D017630 3.5e-06 55.5 48 62.5
CiPaw.16G102000 Carya illinoinensis HOM05D000765 ORTHO05D000613 3.5e-06 55.5 50 54.0
Eucgr.F00464 Eucalyptus grandis HOM05D000765 ORTHO05D000613 3.5e-06 55.5 75 42.7
Gohir.D05G218500 Gossypium hirsutum HOM05D000765 ORTHO05D000613 3.5e-06 55.5 57 52.6
Gorai.009G225500 Gossypium raimondii HOM05D000765 ORTHO05D000613 3.5e-06 55.5 57 52.6
Aa31LG4G9620 Aethionema arabicum HOM05D001049 ORTHO05D001986 4.6e-06 55.1 52 50.0
Ah.05g177820 Amaranthus hybridus HOM05D000765 ORTHO05D000613 4.6e-06 55.1 63 52.4
BraA01t01522Z Brassica rapa HOM05D001049 ORTHO05D001986 4.6e-06 55.1 51 54.9
CANSAT54G0529 Cannabis sativa HOM05D000765 ORTHO05D000613 4.6e-06 55.1 77 42.9
FvH4_5g33660 Fragaria vesca HOM05D000765 ORTHO05D000613 4.6e-06 55.1 50 58.0
FAN18G1322 Fragaria x ananassa HOM05D000765 ORTHO05D000613 4.6e-06 55.1 50 58.0
SalBow7G2663 Salvia bowleyana HOM05D000765 ORTHO05D000613 4.6e-06 55.1 61 50.8
Solyc04g076960.4 Solanum lycopersicum HOM05D000765 ORTHO05D000613 4.6e-06 55.1 77 44.2
Sopen04g030620 Solanum pennellii HOM05D000765 ORTHO05D000613 4.6e-06 55.1 77 44.2
COL.COLO4_35346 Corchorus olitorius HOM05D000765 ORTHO05D000613 6.0e-06 54.7 77 42.9
Thhalv10024568m.g Eutrema salsugineum HOM05D001049 ORTHO05D001986 6.0e-06 54.7 52 53.8
FAN18G3050 Fragaria x ananassa HOM05D000765 ORTHO05D000613 6.0e-06 54.7 71 46.5
TAR628G0912 Trochodendron aralioides HOM05D000765 ORTHO05D000613 6.0e-06 54.7 56 53.6
C01p19820 Brassica napus HOM05D001049 ORTHO05D001986 7.9e-06 54.3 51 52.9
BolC1t01910H Brassica oleracea HOM05D001049 ORTHO05D001986 7.9e-06 54.3 51 52.9
Lalb_Chr08g0242771 Lupinus albus HOM05D000765 ORTHO05D000613 7.9e-06 54.3 37 70.3
Thecc.08G079200 Theobroma cacao HOM05D000765 ORTHO05D000613 7.9e-06 54.3 55 50.9
TWI56G1227 Tripterygium wilfordii HOM05D000765 ORTHO05D000613 7.9e-06 54.3 41 61.0


User provided reference genes

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