Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01064 Brassica carinata HOM05D003695 ORTHO05D027682 9.2e-110 400.2 198 100.0
C03p87590 Brassica napus HOM05D003695 ORTHO05D027682 1.2e-64 250.4 124 100.0
BolC3t21077H Brassica oleracea HOM05D003695 ORTHO05D027682 1.2e-64 250.4 124 100.0
AL7G20270 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 1.6e-45 186.8 341 40.2
Sp3g31410 Schrenkiella parvula HOM05D003695 ORTHO05D004788 4.6e-45 185.3 344 39.2
THA.LOC104807186 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 3.9e-44 182.2 343 39.4
THA.LOC104819511 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 5.1e-44 181.8 344 39.2
Thecc.02G045500 Theobroma cacao HOM05D003695 ORTHO05D004788 5.1e-44 181.8 343 38.8
COL.COLO4_17937 Corchorus olitorius HOM05D003695 ORTHO05D004788 1.5e-43 180.3 343 38.2
Gorai.008G040800 Gossypium raimondii HOM05D003695 ORTHO05D004788 2.0e-43 179.9 343 38.5
Gohir.A12G033600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 2.5e-43 179.5 342 38.0
Actinidia18006 Actinidia chinensis HOM05D003695 ORTHO05D004788 4.3e-43 178.7 343 38.5
Gohir.D12G038900 Gossypium hirsutum HOM05D003695 ORTHO05D004788 5.7e-43 178.3 343 38.2
TWI31G0731 Tripterygium wilfordii HOM05D003695 ORTHO05D004788 5.7e-43 178.3 343 38.5
AL3G51020 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 9.7e-43 177.6 317 41.0
Carub.0003s3212 Capsella rubella HOM05D003695 ORTHO05D004788 9.7e-43 177.6 343 38.8
Duzib132G1261 Durio zibethinus HOM05D003695 ORTHO05D004788 9.7e-43 177.6 343 38.2
Manes.02G063200 Manihot esculenta HOM05D003695 ORTHO05D004788 9.7e-43 177.6 343 38.2
Nn5g30948 Nelumbo nucifera HOM05D003695 ORTHO05D004788 2.2e-42 176.4 344 37.8
Manes.02G064001 Manihot esculenta HOM05D003695 ORTHO05D004788 2.8e-42 176.0 343 37.9
Cfa005327 Carpinus fangiana HOM05D003695 ORTHO05D004788 3.7e-42 175.6 343 37.9
Haze_02053 Corylus avellana HOM05D003695 ORTHO05D004788 3.7e-42 175.6 343 37.9
Potri.004G204400 Populus trichocarpa HOM05D003695 ORTHO05D004788 3.7e-42 175.6 343 37.9
Thhalv10003843m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 4.8e-42 175.3 336 39.0
PGR142G4002 Punica granatum HOM05D003695 ORTHO05D004788 4.8e-42 175.3 343 37.9
AL6G43520 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 6.3e-42 174.9 343 38.5
CARHR286350 Cardamine hirsuta HOM05D003695 ORTHO05D004788 6.3e-42 174.9 331 40.2
Lj4g0019363 Lotus japonicus HOM05D003695 ORTHO05D004788 6.3e-42 174.9 342 37.4
Lalb_Chr07g0189201 Lupinus albus HOM05D003695 ORTHO05D004788 6.3e-42 174.9 342 36.8
Sabra04G0138000 Salix brachista HOM05D003695 ORTHO05D004788 6.3e-42 174.9 343 37.9
arahy.Tifrunner.gnm1.ann1.50NG3N Arachis hypogaea HOM05D003695 ORTHO05D004788 8.2e-42 174.5 343 37.3
arahy.Tifrunner.gnm1.ann1.Q95X63 Arachis hypogaea HOM05D003695 ORTHO05D004788 8.2e-42 174.5 343 37.3
Psat7g095320 Pisum sativum HOM05D003695 ORTHO05D004788 8.2e-42 174.5 343 37.6
Prupe.8G177500 Prunus persica HOM05D003695 ORTHO05D004788 8.2e-42 174.5 343 37.6
ClCG02G003540 Citrullus lanatus HOM05D003695 ORTHO05D004788 1.4e-41 173.7 341 37.0
Duzib052G0095 Durio zibethinus HOM05D003695 ORTHO05D004788 1.4e-41 173.7 342 37.1
MD05G1133700 Malus domestica HOM05D003695 ORTHO05D004788 1.4e-41 173.7 343 37.3
MD10G1138700 Malus domestica HOM05D003695 ORTHO05D004788 1.4e-41 173.7 343 37.3
arahy.Tifrunner.gnm1.ann1.I3VYS4 Arachis hypogaea HOM05D003695 ORTHO05D004788 1.8e-41 173.3 343 37.0
CARHR108470 Cardamine hirsuta HOM05D003695 ORTHO05D004788 1.8e-41 173.3 343 38.2
Cc09_g10660 Coffea canephora HOM05D003695 ORTHO05D004788 1.8e-41 173.3 340 37.1
PSO170G1984 Papaver somniferum HOM05D003695 ORTHO05D004788 1.8e-41 173.3 344 36.9
Actinidia20564 Actinidia chinensis HOM05D003695 ORTHO05D004788 2.4e-41 172.9 343 37.9
Potri.009G165300 Populus trichocarpa HOM05D003695 ORTHO05D004788 4.1e-41 172.2 343 37.6
Peaxi162Scf00362g00220 Petunia axillaris HOM05D003695 ORTHO05D004788 5.3e-41 171.8 343 37.3
QL11p053951 Quercus lobata HOM05D003695 ORTHO05D004788 5.3e-41 171.8 343 37.6
Sed0023045 Sechium edule HOM05D003695 ORTHO05D004788 5.3e-41 171.8 341 37.2
AT2G17980 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 6.9e-41 171.4 338 38.5
C03p58880 Brassica napus HOM05D003695 ORTHO05D004788 6.9e-41 171.4 344 38.1
Rhsim11G0196800 Rhododendron simsii HOM05D003695 ORTHO05D004788 6.9e-41 171.4 343 37.3
Dinv14161 Davidia involucrata HOM05D003695 ORTHO05D004788 9.1e-41 171.0 343 36.7
Nn6g31732 Nelumbo nucifera HOM05D003695 ORTHO05D004788 9.1e-41 171.0 343 37.0
Sed0014704 Sechium edule HOM05D003695 ORTHO05D004788 9.1e-41 171.0 343 37.9
A06p33480 Brassica napus HOM05D003695 ORTHO05D004788 1.2e-40 170.6 344 38.1
Nitab4.5_0003828g0040 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.2e-40 170.6 343 37.0
Nitab4.5_0011212g0010 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.2e-40 170.6 343 37.9
Ca_18316_v3 Cicer arietinum L. HOM05D003695 ORTHO05D004788 1.5e-40 170.2 342 36.5
BcaB08g34780 Brassica carinata HOM05D003695 ORTHO05D004788 2.0e-40 169.9 343 37.9
CAN.G1235.1 Capsicum annuum HOM05D003695 ORTHO05D004788 2.0e-40 169.9 343 37.0
MELO3C013262.2 Cucumis melo HOM05D003695 ORTHO05D004788 2.0e-40 169.9 341 36.7
Dinv41883 Davidia involucrata HOM05D003695 ORTHO05D004788 2.0e-40 169.9 343 36.7
CsaV3_7G001760 Cucumis sativus L. HOM05D003695 ORTHO05D004788 2.6e-40 169.5 341 36.7
Thhalv10022599m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 2.6e-40 169.5 344 37.5
PGSC0003DMG400014674 Solanum tuberosum HOM05D003695 ORTHO05D004788 2.6e-40 169.5 343 37.3
Peaxi162Scf00205g00012 Petunia axillaris HOM05D003695 ORTHO05D004788 3.4e-40 169.1 343 37.0
CSS0016232 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 4.5e-40 168.7 345 36.5
MELO3C022592.2 Cucumis melo HOM05D003695 ORTHO05D004788 4.5e-40 168.7 344 36.9
CsaV3_5G012530 Cucumis sativus L. HOM05D003695 ORTHO05D004788 4.5e-40 168.7 344 36.9
Gorai.002G206000 Gossypium raimondii HOM05D003695 ORTHO05D004788 4.5e-40 168.7 343 37.3
Nitab4.5_0000783g0140 Nicotiana tabacum HOM05D003695 ORTHO05D004788 4.5e-40 168.7 343 37.3
Aa31LG8G15160 Aethionema arabicum HOM05D003695 ORTHO05D004788 5.9e-40 168.3 344 37.5
BcaB01g00720 Brassica carinata HOM05D003695 ORTHO05D004788 5.9e-40 168.3 322 39.4
CANSAT25G1589 Cannabis sativa HOM05D003695 ORTHO05D004788 5.9e-40 168.3 344 37.2
Glyma.05G122800 Glycine max HOM05D003695 ORTHO05D004788 5.9e-40 168.3 342 36.3
Hma1.2p1_0271F.1_g108980 Hydrangea macrophylla HOM05D003695 ORTHO05D004788 5.9e-40 168.3 345 36.8
Ciclev10028035m.g Citrus clementina HOM05D003695 ORTHO05D004788 7.7e-40 167.9 343 37.3
Sabra09G0129300 Salix brachista HOM05D003695 ORTHO05D004788 7.7e-40 167.9 343 37.0
Aqoxy5G01038 Aquilegia oxysepala HOM05D003695 ORTHO05D004788 1.0e-39 167.5 345 36.2
TAR625G0891 Trochodendron aralioides HOM05D003695 ORTHO05D004788 1.0e-39 167.5 344 37.2
CiPaw.05G088700 Carya illinoinensis HOM05D003695 ORTHO05D004788 1.3e-39 167.2 343 36.4
Glyma.08G077800 Glycine max HOM05D003695 ORTHO05D004788 1.3e-39 167.2 342 36.3
Sopen01g054200 Solanum pennellii HOM05D003695 ORTHO05D004788 2.2e-39 166.4 343 36.7
ClCG02G010010 Citrullus lanatus HOM05D003695 ORTHO05D004788 2.9e-39 166.0 344 36.6
Eucgr.G01854 Eucalyptus grandis HOM05D003695 ORTHO05D004788 2.9e-39 166.0 345 37.1
QL02p073794 Quercus lobata HOM05D003695 ORTHO05D004788 3.8e-39 165.6 343 36.7
CSS0026215 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 5.0e-39 165.2 343 37.0
DCAR_015668 Daucus carota HOM05D003695 ORTHO05D004788 6.5e-39 164.9 344 36.9
Medtr4g094405 Medicago truncatula HOM05D003695 ORTHO05D004788 6.5e-39 164.9 347 35.7
FvH4_2g16530 Fragaria vesca HOM05D003695 ORTHO05D004788 1.1e-38 164.1 344 36.0
FAN27G2019 Fragaria x ananassa HOM05D003695 ORTHO05D004788 1.1e-38 164.1 344 36.0
CSS0032013 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 1.9e-38 163.3 343 36.7
Atru.chr9.531 Acer truncatum HOM05D003695 ORTHO05D004788 2.5e-38 162.9 343 36.4
CARHR239630 Cardamine hirsuta HOM05D003695 ORTHO05D004788 3.2e-38 162.5 334 36.8
CiPaw.06G118100 Carya illinoinensis HOM05D003695 ORTHO05D004788 4.2e-38 162.2 343 35.3
RcHm_v2.0_Chr7g0225341 Rosa chinensis HOM05D003695 ORTHO05D004788 4.2e-38 162.2 344 35.8
Gohir.D01G165600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 5.5e-38 161.8 324 37.7
Solyc01g112150.3 Solanum lycopersicum HOM05D003695 ORTHO05D004788 7.2e-38 161.4 343 35.9
DCAR_006289 Daucus carota HOM05D003695 ORTHO05D004788 2.7e-37 159.5 342 36.5
CSS0036850 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 3.6e-37 159.1 343 36.2
PGSC0003DMG400016827 Solanum tuberosum HOM05D003695 ORTHO05D004788 4.7e-37 158.7 319 36.7
ATR0661G017 Amborella trichopoda HOM05D003695 ORTHO05D004788 2.3e-36 156.4 350 34.0
Gohir.A01G174400 Gossypium hirsutum HOM05D003695 ORTHO05D004788 2.3e-36 156.4 321 36.4
MSTRG.27620 Avicennia marina HOM05D003695 ORTHO05D004788 8.8e-36 154.5 345 34.8
MBI05_g12019_MAGBIO Magnolia biondii HOM05D003695 ORTHO05D004788 1.5e-35 153.7 351 34.5
Ah.11g043800 Amaranthus hybridus HOM05D003695 ORTHO05D004788 2.0e-35 153.3 348 35.1
Ah.02g124580 Amaranthus hybridus HOM05D003695 ORTHO05D004788 4.4e-35 152.1 348 34.8
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 1.3e-34 150.6 346 35.0
Sopen10g027010 Solanum pennellii HOM05D003695 ORTHO05D004788 1.7e-34 150.2 343 35.0
CDE07G1944 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 8.2e-34 147.9 343 33.5
BcaC03g17368 Brassica carinata HOM05D003695 ORTHO05D004788 4.1e-33 145.6 316 35.8
BolC2t11383H Brassica oleracea HOM05D003695 ORTHO05D004788 4.1e-33 145.6 316 35.8
AUR62012932 Chenopodium quinoa HOM05D003695 ORTHO05D004788 4.1e-33 145.6 331 34.4
TAR381G0785 Trochodendron aralioides HOM05D003695 ORTHO05D004788 9.1e-33 144.4 318 35.5
Lsat_1_v5_gn_1_280 Lactuca sativa HOM05D003695 ORTHO05D004788 1.2e-32 144.1 137 59.1
CDE04G2739 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 2.6e-32 142.9 343 33.2
Lsat_1_v5_gn_9_39861 Lactuca sativa HOM05D003695 ORTHO05D004788 4.5e-32 142.1 137 58.4
HPP92_008376 Vanilla planifolia HOM05D003695 ORTHO05D004788 5.9e-32 141.7 350 32.6
HanXRQChr14g0459051 Helianthus annuus HOM05D003695 ORTHO05D004788 1.3e-31 140.6 137 59.1
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 2.2e-31 139.8 342 33.6
SHI55151 Sapria himalayana HOM05D003695 ORTHO05D004788 2.9e-31 139.4 332 33.1
SEGI_21511 Sequoiadendron giganteum HOM05D003695 ORTHO05D004788 3.8e-31 139.0 344 31.7
Pp3c4_5220 Physcomitrium patens HOM05D003695 ORTHO05D004788 8.5e-31 137.9 350 31.1
ECA232G0128 Erigeron canadensis HOM05D003695 ORTHO05D004788 1.1e-30 137.5 137 58.4
Lj5A173T63 Lonicera japonica HOM05D003695 ORTHO05D004788 1.1e-30 137.5 137 58.4
Phvul.002G202700 Phaseolus vulgaris HOM05D003695 ORTHO05D004788 1.5e-30 137.1 138 57.2
unitig_62.g23821 Utricularia gibba HOM05D003695 ORTHO05D004788 1.5e-30 137.1 313 34.2
VMungo0251G1743 Vigna mungo HOM05D003695 ORTHO05D004788 1.5e-30 137.1 138 57.2
vmacro21804 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 1.9e-30 136.7 137 58.4
vmacro08752 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 2.5e-30 136.3 137 58.4
FAN15G0675 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.2e-30 135.6 138 56.5
GSVIVG01023951001 Vitis vinifera HOM05D003695 ORTHO05D004788 5.5e-30 135.2 137 57.7
Nitab4.5_0001700g0110 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.2e-29 134.0 328 34.1
arahy.Tifrunner.gnm1.ann1.KDN8FX Arachis hypogaea HOM05D003695 ORTHO05D004788 3.6e-29 132.5 134 57.5
Mapoly0007s0195 Marchantia polymorpha HOM05D003695 ORTHO05D004788 4.7e-29 132.1 352 30.4
Zm00001eb190510 Zea mays HOM05D003695 ORTHO05D004788 6.1e-29 131.7 350 30.9
Atru.chr9.527 Acer truncatum HOM05D003695 ORTHO05D004788 1.4e-28 130.6 137 56.9
SalBow1G1498 Salvia bowleyana HOM05D003695 ORTHO05D004788 1.8e-28 130.2 138 53.6
AagrBONN_evm.TU.Sc2ySwM_117.2597 Anthoceros agrestis HOM05D003695 ORTHO05D004788 2.3e-28 129.8 352 30.7
BcaB07g29909 Brassica carinata HOM05D003695 ORTHO05D004788 4.0e-28 129.0 136 59.6
Migut.E00721 Erythranthe guttata HOM05D003695 ORTHO05D004788 4.0e-28 129.0 138 52.9
FAN08G1272 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.0e-28 129.0 138 53.6
Oeu021964.1 Olea europaea HOM05D003695 ORTHO05D004788 8.8e-28 127.9 181 45.9
Oeu062472.1 Olea europaea HOM05D003695 ORTHO05D004788 8.8e-28 127.9 142 54.2
Oeu062473.1 Olea europaea HOM05D003695 ORTHO05D004788 8.8e-28 127.9 142 54.2
Hund28543 Selenicereus undatus HOM05D003695 ORTHO05D004788 1.1e-27 127.5 170 46.5
Hund28545 Selenicereus undatus HOM05D003695 ORTHO05D004788 1.1e-27 127.5 170 46.5
SGA_v2.0_scaffold32G13340 Striga asiatica HOM05D003695 ORTHO05D004788 1.1e-27 127.5 138 52.9
Sc18g0005940 Simmondsia chinensis HOM05D003695 ORTHO05D004788 1.5e-27 127.1 138 52.9
MSTRG.5469 Avicennia marina HOM05D003695 ORTHO05D004788 5.7e-27 125.2 138 52.2
FvH4_5g21340 Fragaria vesca HOM05D003695 ORTHO05D004788 5.7e-27 125.2 138 52.9
FAN24G2440 Fragaria x ananassa HOM05D003695 ORTHO05D004788 5.7e-27 125.2 120 58.3
SMO134G0246 Selaginella moellendorffii HOM05D003695 ORTHO05D004788 5.7e-27 125.2 352 29.8
Os03g0620800 Oryza sativa ssp. japonica HOM05D003695 ORTHO05D004788 9.7e-27 124.4 348 29.9
CBR_g41372 Chara braunii HOM05D003695 ORTHO05D004788 1.4e-25 120.6 356 28.4
AUR62034267 Chenopodium quinoa HOM05D003695 ORTHO05D004788 7.0e-25 118.2 342 31.6
Zm00001eb027830 Zea mays HOM05D003695 ORTHO05D004788 5.0e-23 112.1 345 29.0
Pp3c12_11250 Physcomitrium patens HOM05D003695 ORTHO05D004788 2.5e-22 109.8 138 47.8
MCO11G234 Micromonas commoda HOM05D003695 ORTHO05D004788 2.8e-18 96.3 133 42.1
Cpa.g.sc20.199 Carica papaya HOM05D003695 ORTHO05D004788 4.8e-18 95.5 123 48.8
PRCOL_00000573 Prasinoderma coloniale HOM05D003695 ORTHO05D004788 2.5e-14 83.2 119 42.9
Cre12.g521350 Chlamydomonas reinhardtii HOM05D003695 ORTHO05D004788 9.4e-14 81.3 120 37.5
Cfa025643 Carpinus fangiana HOM05D003695 ORTHO05D004788 1.2e-13 80.9 142 34.5
TPR.G23776 Trifolium pratense HOM05D003695 ORTHO05D004788 5.7e-11 72.0 61 59.0
A02p34590 Brassica napus HOM05D003695 ORTHO05D004788 1.3e-10 70.9 85 50.6
C02p53090 Brassica napus HOM05D003695 ORTHO05D004788 1.3e-10 70.9 85 47.1
BraA02t08467Z Brassica rapa HOM05D003695 ORTHO05D004788 1.3e-10 70.9 85 50.6
Rhsim09G0204000 Rhododendron simsii HOM05D003695 ORTHO05D048971 3.1e-09 66.2 79 55.7
FvH4_5g21350 Fragaria vesca HOM05D003695 ORTHO05D004788 2.7e-08 63.2 48 64.6
FAN04G0554 Fragaria x ananassa HOM05D003695 ORTHO05D004788 3.3e-06 56.2 44 65.9


User provided reference genes

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