Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01063 Brassica carinata HOM05D003695 ORTHO05D027682 1.6e-115 419.5 223 100.0
C03p87590 Brassica napus HOM05D003695 ORTHO05D027682 8.8e-93 344.0 223 86.1
BolC3t21077H Brassica oleracea HOM05D003695 ORTHO05D027682 8.8e-93 344.0 223 86.1
AL7G20270 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 1.2e-73 280.4 224 70.1
Thhalv10003843m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 1.2e-70 270.4 227 68.3
Sp3g31410 Schrenkiella parvula HOM05D003695 ORTHO05D004788 1.4e-69 266.9 224 64.7
Aa31LG8G15160 Aethionema arabicum HOM05D003695 ORTHO05D004788 3.0e-69 265.8 224 65.2
AL6G43520 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 3.0e-69 265.8 225 65.3
CARHR108470 Cardamine hirsuta HOM05D003695 ORTHO05D004788 4.0e-69 265.4 224 64.7
Carub.0003s3212 Capsella rubella HOM05D003695 ORTHO05D004788 6.8e-69 264.6 225 65.3
AL3G51020 Arabidopsis lyrata HOM05D003695 ORTHO05D004788 8.9e-69 264.2 225 64.9
BcaB08g34780 Brassica carinata HOM05D003695 ORTHO05D004788 8.9e-69 264.2 224 64.3
THA.LOC104819511 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 8.9e-69 264.2 224 64.3
A06p33480 Brassica napus HOM05D003695 ORTHO05D004788 1.5e-68 263.5 224 64.3
AT2G17980 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 2.6e-68 262.7 225 65.8
C03p58880 Brassica napus HOM05D003695 ORTHO05D004788 3.4e-68 262.3 224 63.8
THA.LOC104807186 Tarenaya hassleriana HOM05D003695 ORTHO05D004788 3.7e-67 258.8 224 64.7
Thhalv10022599m.g Eutrema salsugineum HOM05D003695 ORTHO05D004788 4.9e-67 258.5 226 63.3
FvH4_2g16530 Fragaria vesca HOM05D003695 ORTHO05D004788 4.1e-66 255.4 227 64.3
FAN15G0675 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.1e-66 255.4 227 64.3
FAN24G2440 Fragaria x ananassa HOM05D003695 ORTHO05D004788 4.1e-66 255.4 227 64.3
Eucgr.G01854 Eucalyptus grandis HOM05D003695 ORTHO05D004788 2.0e-65 253.1 225 62.7
PGR142G4002 Punica granatum HOM05D003695 ORTHO05D004788 4.6e-65 251.9 225 63.1
RcHm_v2.0_Chr7g0225341 Rosa chinensis HOM05D003695 ORTHO05D004788 5.9e-65 251.5 227 63.4
Glyma.05G122800 Glycine max HOM05D003695 ORTHO05D004788 7.8e-65 251.1 225 62.7
Ca_18316_v3 Cicer arietinum L. HOM05D003695 ORTHO05D004788 1.0e-64 250.8 225 62.7
MD10G1138700 Malus domestica HOM05D003695 ORTHO05D004788 1.3e-64 250.4 228 62.3
Ciclev10028035m.g Citrus clementina HOM05D003695 ORTHO05D004788 1.7e-64 250.0 224 62.5
Atru.chr9.527 Acer truncatum HOM05D003695 ORTHO05D004788 3.0e-64 249.2 225 62.2
FAN27G2019 Fragaria x ananassa HOM05D003695 ORTHO05D004788 3.9e-64 248.8 227 63.0
COL.COLO4_17937 Corchorus olitorius HOM05D003695 ORTHO05D004788 5.0e-64 248.4 226 62.8
Lalb_Chr07g0189201 Lupinus albus HOM05D003695 ORTHO05D004788 5.0e-64 248.4 225 62.7
MD05G1133700 Malus domestica HOM05D003695 ORTHO05D004788 5.0e-64 248.4 228 61.8
Duzib132G1261 Durio zibethinus HOM05D003695 ORTHO05D004788 6.6e-64 248.1 226 62.4
VMungo0251G1743 Vigna mungo HOM05D003695 ORTHO05D004788 6.6e-64 248.1 225 61.8
Duzib052G0095 Durio zibethinus HOM05D003695 ORTHO05D004788 8.6e-64 247.7 225 61.8
FAN04G0554 Fragaria x ananassa HOM05D003695 ORTHO05D004788 1.9e-63 246.5 208 65.9
HanXRQChr14g0459051 Helianthus annuus HOM05D003695 ORTHO05D004788 1.9e-63 246.5 225 63.1
Medtr4g094405 Medicago truncatula HOM05D003695 ORTHO05D004788 1.9e-63 246.5 225 61.8
Psat7g095320 Pisum sativum HOM05D003695 ORTHO05D004788 1.9e-63 246.5 225 62.2
Potri.004G204400 Populus trichocarpa HOM05D003695 ORTHO05D004788 1.9e-63 246.5 225 61.3
Sabra04G0138000 Salix brachista HOM05D003695 ORTHO05D004788 2.5e-63 246.1 225 61.3
Gohir.A12G033600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 3.3e-63 245.7 225 60.9
Thecc.02G045500 Theobroma cacao HOM05D003695 ORTHO05D004788 4.3e-63 245.4 225 61.8
vmacro21804 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 4.3e-63 245.4 225 61.3
FAN08G1272 Fragaria x ananassa HOM05D003695 ORTHO05D004788 5.6e-63 245.0 227 61.2
Prupe.8G177500 Prunus persica HOM05D003695 ORTHO05D004788 7.3e-63 244.6 228 61.0
Phvul.002G202700 Phaseolus vulgaris HOM05D003695 ORTHO05D004788 9.5e-63 244.2 225 60.9
Rhsim11G0196800 Rhododendron simsii HOM05D003695 ORTHO05D004788 9.5e-63 244.2 225 61.8
Glyma.08G077800 Glycine max HOM05D003695 ORTHO05D004788 1.2e-62 243.8 225 61.8
Manes.02G064001 Manihot esculenta HOM05D003695 ORTHO05D004788 1.2e-62 243.8 224 60.3
ClCG02G010010 Citrullus lanatus HOM05D003695 ORTHO05D004788 1.6e-62 243.4 225 60.4
Lj4g0019363 Lotus japonicus HOM05D003695 ORTHO05D004788 1.6e-62 243.4 225 61.3
Aqoxy5G01038 Aquilegia oxysepala HOM05D003695 ORTHO05D004788 2.1e-62 243.0 224 58.9
CANSAT25G1589 Cannabis sativa HOM05D003695 ORTHO05D004788 2.1e-62 243.0 225 61.3
Dinv14161 Davidia involucrata HOM05D003695 ORTHO05D004788 2.8e-62 242.7 225 62.2
Gohir.D12G038900 Gossypium hirsutum HOM05D003695 ORTHO05D004788 3.6e-62 242.3 225 60.0
Gorai.008G040800 Gossypium raimondii HOM05D003695 ORTHO05D004788 3.6e-62 242.3 225 60.0
Peaxi162Scf00205g00012 Petunia axillaris HOM05D003695 ORTHO05D004788 3.6e-62 242.3 225 60.4
TWI31G0731 Tripterygium wilfordii HOM05D003695 ORTHO05D004788 3.6e-62 242.3 229 60.3
vmacro08752 Vaccinium macrocarpon HOM05D003695 ORTHO05D004788 3.6e-62 242.3 225 61.3
Manes.02G063200 Manihot esculenta HOM05D003695 ORTHO05D004788 4.7e-62 241.9 224 59.8
Dinv41883 Davidia involucrata HOM05D003695 ORTHO05D004788 6.2e-62 241.5 225 60.9
Sabra09G0129300 Salix brachista HOM05D003695 ORTHO05D004788 8.0e-62 241.1 225 59.6
CAN.G1235.1 Capsicum annuum HOM05D003695 ORTHO05D004788 1.0e-61 240.7 225 59.6
Nitab4.5_0000783g0140 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.0e-61 240.7 225 60.0
CsaV3_5G012530 Cucumis sativus L. HOM05D003695 ORTHO05D004788 1.4e-61 240.4 225 60.0
Sed0014704 Sechium edule HOM05D003695 ORTHO05D004788 1.4e-61 240.4 226 60.2
Solyc01g112150.3 Solanum lycopersicum HOM05D003695 ORTHO05D004788 1.4e-61 240.4 225 60.0
PGSC0003DMG400014674 Solanum tuberosum HOM05D003695 ORTHO05D004788 1.4e-61 240.4 225 60.0
FvH4_5g21350 Fragaria vesca HOM05D003695 ORTHO05D004788 1.8e-61 240.0 222 61.7
Nitab4.5_0011212g0010 Nicotiana tabacum HOM05D003695 ORTHO05D004788 2.3e-61 239.6 225 59.6
Sopen01g054200 Solanum pennellii HOM05D003695 ORTHO05D004788 2.3e-61 239.6 225 60.0
ECA232G0128 Erigeron canadensis HOM05D003695 ORTHO05D004788 3.1e-61 239.2 225 61.3
Atru.chr9.531 Acer truncatum HOM05D003695 ORTHO05D004788 5.2e-61 238.4 225 60.0
Hma1.2p1_0271F.1_g108980 Hydrangea macrophylla HOM05D003695 ORTHO05D004788 5.2e-61 238.4 225 59.6
Potri.009G165300 Populus trichocarpa HOM05D003695 ORTHO05D004788 6.8e-61 238.0 225 59.1
BcaB03g12716 Brassica carinata HOM05D003695 ORTHO05D004788 1.5e-60 236.9 210 62.4
MELO3C022592.2 Cucumis melo HOM05D003695 ORTHO05D004788 1.5e-60 236.9 225 59.6
Nitab4.5_0001700g0110 Nicotiana tabacum HOM05D003695 ORTHO05D004788 1.5e-60 236.9 225 59.1
TAR625G0891 Trochodendron aralioides HOM05D003695 ORTHO05D004788 1.5e-60 236.9 225 59.1
Nitab4.5_0003828g0040 Nicotiana tabacum HOM05D003695 ORTHO05D004788 2.0e-60 236.5 225 58.7
Peaxi162Scf00362g00220 Petunia axillaris HOM05D003695 ORTHO05D004788 3.4e-60 235.7 225 58.7
BcaB01g00720 Brassica carinata HOM05D003695 ORTHO05D004788 4.4e-60 235.3 233 60.9
Cfa005327 Carpinus fangiana HOM05D003695 ORTHO05D004788 4.4e-60 235.3 224 59.8
Gohir.A01G174400 Gossypium hirsutum HOM05D003695 ORTHO05D004788 4.4e-60 235.3 231 59.3
QL02p073794 Quercus lobata HOM05D003695 ORTHO05D004788 4.4e-60 235.3 224 59.8
MBI05_g12019_MAGBIO Magnolia biondii HOM05D003695 ORTHO05D004788 5.8e-60 235.0 225 58.2
PSO170G1984 Papaver somniferum HOM05D003695 ORTHO05D004788 5.8e-60 235.0 225 59.1
Actinidia20564 Actinidia chinensis HOM05D003695 ORTHO05D004788 7.5e-60 234.6 226 60.6
Haze_02053 Corylus avellana HOM05D003695 ORTHO05D004788 7.5e-60 234.6 224 59.4
Sc18g0005940 Simmondsia chinensis HOM05D003695 ORTHO05D004788 7.5e-60 234.6 224 60.3
DCAR_006289 Daucus carota HOM05D003695 ORTHO05D004788 9.8e-60 234.2 224 59.8
CiPaw.06G118100 Carya illinoinensis HOM05D003695 ORTHO05D004788 1.7e-59 233.4 224 58.0
SGA_v2.0_scaffold32G13340 Striga asiatica HOM05D003695 ORTHO05D004788 1.7e-59 233.4 224 60.7
Migut.E00721 Erythranthe guttata HOM05D003695 ORTHO05D004788 2.2e-59 233.0 224 58.9
Nn5g30948 Nelumbo nucifera HOM05D003695 ORTHO05D004788 2.9e-59 232.6 224 58.5
Lj5A173T63 Lonicera japonica HOM05D003695 ORTHO05D004788 3.7e-59 232.3 225 58.7
QL11p053951 Quercus lobata HOM05D003695 ORTHO05D004788 3.7e-59 232.3 224 57.6
CSS0032013 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 6.4e-59 231.5 225 58.7
DCAR_015668 Daucus carota HOM05D003695 ORTHO05D004788 6.4e-59 231.5 224 58.5
arahy.Tifrunner.gnm1.ann1.50NG3N Arachis hypogaea HOM05D003695 ORTHO05D004788 8.3e-59 231.1 224 58.0
arahy.Tifrunner.gnm1.ann1.I3VYS4 Arachis hypogaea HOM05D003695 ORTHO05D004788 8.3e-59 231.1 224 58.0
arahy.Tifrunner.gnm1.ann1.Q95X63 Arachis hypogaea HOM05D003695 ORTHO05D004788 8.3e-59 231.1 224 58.0
ClCG02G003540 Citrullus lanatus HOM05D003695 ORTHO05D004788 1.1e-58 230.7 225 56.4
CSS0026215 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 1.4e-58 230.3 225 57.3
unitig_62.g23821 Utricularia gibba HOM05D003695 ORTHO05D004788 1.4e-58 230.3 224 58.0
MSTRG.5469 Avicennia marina HOM05D003695 ORTHO05D004788 1.9e-58 229.9 226 58.4
SalBow1G1498 Salvia bowleyana HOM05D003695 ORTHO05D004788 1.9e-58 229.9 226 59.7
Sed0023045 Sechium edule HOM05D003695 ORTHO05D004788 1.9e-58 229.9 225 56.9
Oeu021964.1 Olea europaea HOM05D003695 ORTHO05D004788 2.4e-58 229.6 225 57.3
Oeu062472.1 Olea europaea HOM05D003695 ORTHO05D004788 2.4e-58 229.6 225 57.3
Oeu062473.1 Olea europaea HOM05D003695 ORTHO05D004788 2.4e-58 229.6 225 57.3
Lsat_1_v5_gn_9_39861 Lactuca sativa HOM05D003695 ORTHO05D004788 4.1e-58 228.8 220 60.0
CiPaw.05G088700 Carya illinoinensis HOM05D003695 ORTHO05D004788 5.4e-58 228.4 224 58.5
Lsat_1_v5_gn_1_280 Lactuca sativa HOM05D003695 ORTHO05D004788 5.4e-58 228.4 225 60.0
CARHR239640 Cardamine hirsuta HOM05D003695 ORTHO05D004788 7.0e-58 228.0 155 77.4
Actinidia18006 Actinidia chinensis HOM05D003695 ORTHO05D004788 9.2e-58 227.6 225 58.2
Hund28543 Selenicereus undatus HOM05D003695 ORTHO05D004788 9.2e-58 227.6 224 57.6
Hund28545 Selenicereus undatus HOM05D003695 ORTHO05D004788 9.2e-58 227.6 224 57.6
TPR.G23776 Trifolium pratense HOM05D003695 ORTHO05D004788 2.7e-57 226.1 225 59.6
CsaV3_7G001760 Cucumis sativus L. HOM05D003695 ORTHO05D004788 3.5e-57 225.7 225 56.0
ATR0661G017 Amborella trichopoda HOM05D003695 ORTHO05D004788 2.3e-56 223.0 225 56.4
Cpa.g.sc20.199 Carica papaya HOM05D003695 ORTHO05D004788 2.3e-56 223.0 204 61.3
MELO3C013262.2 Cucumis melo HOM05D003695 ORTHO05D004788 2.3e-56 223.0 225 55.1
CDE07G1944 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 1.5e-55 220.3 209 59.8
MSTRG.27620 Avicennia marina HOM05D003695 ORTHO05D004788 5.6e-55 218.4 230 56.1
SEGI_21511 Sequoiadendron giganteum HOM05D003695 ORTHO05D004788 7.3e-55 218.0 224 53.6
CSS0036850 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 3.6e-54 215.7 215 57.2
CSS0016232 Camellia sinensis var. sinensis HOM05D003695 ORTHO05D004788 4.7e-54 215.3 215 58.6
HPP92_008376 Vanilla planifolia HOM05D003695 ORTHO05D004788 4.7e-54 215.3 224 53.1
Zm00001eb190510 Zea mays HOM05D003695 ORTHO05D004788 1.1e-53 214.2 213 57.7
Os03g0620800 Oryza sativa ssp. japonica HOM05D003695 ORTHO05D004788 1.2e-52 210.7 224 54.0
AUR62012932 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.3e-51 207.2 224 54.0
AUR62027130 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.7e-51 206.8 224 53.6
Ah.11g043800 Amaranthus hybridus HOM05D003695 ORTHO05D004788 2.2e-51 206.5 224 54.0
EL10Ac9g21259 Beta vulgaris HOM05D003695 ORTHO05D004788 4.9e-51 205.3 224 54.5
Ah.02g124580 Amaranthus hybridus HOM05D003695 ORTHO05D004788 8.3e-51 204.5 224 54.0
GSVIVG01023951001 Vitis vinifera HOM05D003695 ORTHO05D004788 1.1e-50 204.1 207 57.0
AUR62034267 Chenopodium quinoa HOM05D003695 ORTHO05D004788 1.9e-50 203.4 224 53.1
Zm00001eb027830 Zea mays HOM05D003695 ORTHO05D004788 4.1e-50 202.2 225 52.4
Gohir.D01G165600 Gossypium hirsutum HOM05D003695 ORTHO05D004788 1.0e-48 197.6 185 62.2
Mapoly0007s0195 Marchantia polymorpha HOM05D003695 ORTHO05D004788 2.3e-48 196.4 226 50.0
Pp3c4_5220 Physcomitrium patens HOM05D003695 ORTHO05D004788 8.6e-48 194.5 224 50.9
Gorai.002G206000 Gossypium raimondii HOM05D003695 ORTHO05D004788 4.3e-47 192.2 196 57.7
BcaB07g29908 Brassica carinata HOM05D003695 ORTHO05D004788 4.7e-46 188.7 163 67.5
CDE04G2739 Ceratophyllum demersum HOM05D003695 ORTHO05D004788 6.8e-45 184.9 209 53.1
SHI55151 Sapria himalayana HOM05D003695 ORTHO05D004788 3.4e-44 182.6 219 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2597 Anthoceros agrestis HOM05D003695 ORTHO05D004788 6.4e-43 178.3 233 44.6
CBR_g41372 Chara braunii HOM05D003695 ORTHO05D004788 6.4e-43 178.3 228 46.1
SMO134G0246 Selaginella moellendorffii HOM05D003695 ORTHO05D004788 1.2e-41 174.1 224 47.8
AT4G31740 Arabidopsis thaliana HOM05D003695 ORTHO05D004788 2.7e-41 172.9 155 63.2
Pp3c12_11250 Physcomitrium patens HOM05D003695 ORTHO05D004788 4.0e-37 159.1 215 45.6
PRCOL_00000573 Prasinoderma coloniale HOM05D003695 ORTHO05D004788 6.0e-25 118.6 239 33.1
Cre12.g521350 Chlamydomonas reinhardtii HOM05D003695 ORTHO05D004788 1.9e-23 113.6 232 32.8
MCO11G234 Micromonas commoda HOM05D003695 ORTHO05D004788 1.6e-22 110.5 232 34.1
C02p53090 Brassica napus HOM05D003695 ORTHO05D004788 1.4e-21 107.5 113 58.4
BolC2t11383H Brassica oleracea HOM05D003695 ORTHO05D004788 1.4e-21 107.5 113 58.4
TPR.G31636 Trifolium pratense HOM05D003695 ORTHO05D025748 1.3e-19 100.9 93 60.2
AT4G36100 Arabidopsis thaliana HOM05D003695 ORTHO05D000483 2.7e-17 93.2 138 48.6
RcHm_v2.0_Chr6g0280551 Rosa chinensis HOM05D003695 ORTHO05D025748 6.2e-14 82.0 66 57.6
Sopen10g027010 Solanum pennellii HOM05D003695 ORTHO05D004788 9.3e-10 68.2 87 46.0
Lsat_1_v5_gn_3_116720 Lactuca sativa HOM05D003695 ORTHO05D025748 1.0e-08 64.7 70 50.0
Nn6g31732 Nelumbo nucifera HOM05D003695 ORTHO05D004788 1.3e-08 64.3 52 63.5
Cfa025643 Carpinus fangiana HOM05D003695 ORTHO05D004788 1.1e-07 61.2 253 25.7
Cc09_g10660 Coffea canephora HOM05D003695 ORTHO05D004788 1.9e-07 60.5 52 59.6
A02p34590 Brassica napus HOM05D003695 ORTHO05D004788 7.4e-07 58.5 51 62.7
BraA02t08467Z Brassica rapa HOM05D003695 ORTHO05D004788 7.4e-07 58.5 51 62.7
BcaC03g17368 Brassica carinata HOM05D003695 ORTHO05D004788 8.2e-06 55.1 41 68.3


User provided reference genes

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