Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01038 Brassica carinata HOM05D013025 ORTHO05D014087 8.4e-57 223.4 108 100.0
BcaC01g01037 Brassica carinata HOM05D013025 ORTHO05D014087 3.9e-46 188.0 92 97.8
C08p37100 Brassica napus HOM05D013025 ORTHO05D014087 4.0e-43 177.9 87 97.7
C01p30970 Brassica napus HOM05D013025 ORTHO05D014087 6.9e-43 177.2 87 96.6
BolC1t03031H Brassica oleracea HOM05D013025 ORTHO05D014087 6.9e-43 177.2 87 96.6
BolC8t51288H Brassica oleracea HOM05D013025 ORTHO05D014087 3.4e-42 174.9 87 96.6
BolC2t07170H Brassica oleracea HOM05D013025 ORTHO05D014087 8.4e-41 170.2 83 97.6
BcaC09g49941 Brassica carinata HOM05D013025 ORTHO05D014087 1.2e-31 139.8 76 90.8
BolC2t08558H Brassica oleracea HOM05D013025 ORTHO05D014087 1.7e-28 129.4 85 74.1
C02p24600 Brassica napus HOM05D013025 ORTHO05D014087 2.8e-28 128.6 85 74.1
BcaB06g25634 Brassica carinata HOM05D013025 ORTHO05D014087 1.5e-26 122.9 94 63.8
BcaC07g42472 Brassica carinata HOM05D001823 ORTHO05D014087 2.2e-25 119.0 83 69.9
BcaC03g14947 Brassica carinata HOM05D001823 ORTHO05D014087 5.0e-25 117.9 116 56.9
BcaC01g05261 Brassica carinata HOM05D001823 ORTHO05D001909 1.4e-19 99.8 115 54.8
Thhalv10016961m.g Eutrema salsugineum HOM05D001823 ORTHO05D001909 1.5e-18 96.3 113 54.0
BcaNung03541 Brassica carinata HOM05D001823 ORTHO05D001909 2.0e-18 95.9 113 53.1
A05p03610 Brassica napus HOM05D001823 ORTHO05D001909 4.5e-18 94.7 113 52.2
BraA05t19347Z Brassica rapa HOM05D001823 ORTHO05D001909 4.5e-18 94.7 113 52.2
A03p23990 Brassica napus HOM05D001823 ORTHO05D001909 5.9e-18 94.4 113 53.1
BraA03t11611Z Brassica rapa HOM05D001823 ORTHO05D001909 5.9e-18 94.4 113 53.1
Sp4g25250 Schrenkiella parvula HOM05D001823 ORTHO05D001909 5.9e-18 94.4 113 53.1
BcaC02g12412 Brassica carinata HOM05D001823 ORTHO05D001909 1.0e-17 93.6 113 52.2
C04p04210 Brassica napus HOM05D001823 ORTHO05D001909 1.0e-17 93.6 113 52.2
BolC4t22058H Brassica oleracea HOM05D001823 ORTHO05D001909 1.0e-17 93.6 113 52.2
C03p28600 Brassica napus HOM05D001823 ORTHO05D001909 2.9e-17 92.0 113 52.2
BolC3t15224H Brassica oleracea HOM05D001823 ORTHO05D001909 2.9e-17 92.0 113 52.2
CARHR138190 Cardamine hirsuta HOM05D001823 ORTHO05D001909 2.9e-17 92.0 113 51.3
AL4G41780 Arabidopsis lyrata HOM05D001823 ORTHO05D001909 8.5e-17 90.5 113 51.3
AT2G43120 Arabidopsis thaliana HOM05D001823 ORTHO05D001909 1.4e-16 89.7 113 49.6
Carub.0004s2560 Capsella rubella HOM05D001823 ORTHO05D001909 5.5e-16 87.8 113 49.6
A02p29520 Brassica napus HOM05D013025 ORTHO05D014087 1.4e-14 83.2 82 54.9
BraA02t07978Z Brassica rapa HOM05D013025 ORTHO05D014087 1.4e-14 83.2 82 54.9
THA.LOC104803495 Tarenaya hassleriana HOM05D001823 ORTHO05D001909 4.1e-11 71.6 115 42.6
AUR62037111 Chenopodium quinoa HOM05D001823 ORTHO05D001909 7.0e-11 70.9 98 43.9
Aa31LG1G24930 Aethionema arabicum HOM05D001823 ORTHO05D001909 1.6e-10 69.7 98 44.9
AT3G59220 Arabidopsis thaliana HOM05D001823 ORTHO05D001909 1.6e-10 69.7 117 40.2
HanXRQChr17g0546191 Helianthus annuus HOM05D001823 ORTHO05D001909 1.6e-10 69.7 113 39.8
AL5G41100 Arabidopsis lyrata HOM05D001823 ORTHO05D001909 3.5e-10 68.6 117 40.2
EL10Ac5g11610 Beta vulgaris HOM05D001823 ORTHO05D001909 5.9e-10 67.8 98 44.9
AUR62042876 Chenopodium quinoa HOM05D001823 ORTHO05D001909 5.9e-10 67.8 98 43.9
Carub.0005s2594 Capsella rubella HOM05D001823 ORTHO05D001909 7.7e-10 67.4 117 40.2
VMungo1383G3013 Vigna mungo HOM05D001823 ORTHO05D001909 2.2e-09 65.9 98 41.8
THA.LOC104802291 Tarenaya hassleriana HOM05D001823 ORTHO05D001909 2.9e-09 65.5 115 40.9
ClCG07G016710 Citrullus lanatus HOM05D001823 ORTHO05D001909 1.9e-08 62.8 113 37.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.9e-08 62.8 113 38.9
SEGI_23229 Sequoiadendron giganteum HOM05D001823 ORTHO05D001909 1.9e-08 62.8 118 37.3
MELO3C017671.2 Cucumis melo HOM05D001823 ORTHO05D001909 2.5e-08 62.4 113 37.2
Peaxi162Scf00286g00444 Petunia axillaris HOM05D001823 ORTHO05D001909 2.5e-08 62.4 98 39.8
CAN.G710.33 Capsicum annuum HOM05D001823 ORTHO05D001909 3.2e-08 62.0 113 37.2
CAN.G710.35 Capsicum annuum HOM05D001823 ORTHO05D001909 4.2e-08 61.6 113 38.1
CiPaw.02G058100 Carya illinoinensis HOM05D001823 ORTHO05D001909 5.5e-08 61.2 113 38.1
Solyc09g098160.3 Solanum lycopersicum HOM05D001823 ORTHO05D001909 5.5e-08 61.2 113 36.3
Solyc09g098180.4 Solanum lycopersicum HOM05D001823 ORTHO05D001909 5.5e-08 61.2 113 38.1
Sopen09g036110 Solanum pennellii HOM05D001823 ORTHO05D001909 5.5e-08 61.2 113 36.3
Sopen09g036130 Solanum pennellii HOM05D001823 ORTHO05D001909 5.5e-08 61.2 113 38.1
arahy.Tifrunner.gnm1.ann1.1Y86Y0 Arachis hypogaea HOM05D001823 ORTHO05D001909 7.2e-08 60.8 98 40.8
arahy.Tifrunner.gnm1.ann1.V9H137 Arachis hypogaea HOM05D001823 ORTHO05D001909 7.2e-08 60.8 98 40.8
Nitab4.5_0006630g0020 Nicotiana tabacum HOM05D001823 ORTHO05D001909 7.2e-08 60.8 113 37.2
Nitab4.5_0006630g0040 Nicotiana tabacum HOM05D001823 ORTHO05D001909 7.2e-08 60.8 113 36.3
Phvul.008G001900 Phaseolus vulgaris HOM05D001823 ORTHO05D001909 7.2e-08 60.8 98 40.8
Lsat_1_v5_gn_3_111920 Lactuca sativa HOM05D001823 ORTHO05D001909 9.4e-08 60.5 98 39.8
Lalb_Chr02g0144501 Lupinus albus HOM05D001823 ORTHO05D001909 9.4e-08 60.5 120 35.8
Medtr7g405830 Medicago truncatula HOM05D001823 ORTHO05D001909 9.4e-08 60.5 102 42.2
Oeu053850.1 Olea europaea HOM05D001823 ORTHO05D001909 9.4e-08 60.5 79 45.6
Psat6g142920 Pisum sativum HOM05D001823 ORTHO05D001909 9.4e-08 60.5 113 36.3
Sed0021464 Sechium edule HOM05D001823 ORTHO05D001909 9.4e-08 60.5 113 34.5
Sc16g0003520 Simmondsia chinensis HOM05D001823 ORTHO05D001909 9.4e-08 60.5 114 36.0
PGSC0003DMG400011910 Solanum tuberosum HOM05D001823 ORTHO05D001909 1.2e-07 60.1 113 38.1
CSS0024421 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 1.6e-07 59.7 113 36.3
CSS0043943 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 1.6e-07 59.7 113 36.3
Cpa.g.sc12.210 Carica papaya HOM05D001823 ORTHO05D001909 1.6e-07 59.7 113 36.3
CsaV3_4G003840 Cucumis sativus L. HOM05D001823 ORTHO05D001909 1.6e-07 59.7 98 37.8
Gohir.D05G377700 Gossypium hirsutum HOM05D001823 ORTHO05D001909 2.7e-07 58.9 113 37.2
Gorai.009G445500 Gossypium raimondii HOM05D001823 ORTHO05D001909 2.7e-07 58.9 113 37.2
Lj1g0004893 Lotus japonicus HOM05D001823 ORTHO05D001909 2.7e-07 58.9 98 39.8
Nitab4.5_0004200g0090 Nicotiana tabacum HOM05D001823 ORTHO05D001909 2.7e-07 58.9 113 37.2
CSS0010248 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 3.6e-07 58.5 89 39.3
COL.COLO4_07300 Corchorus olitorius HOM05D001823 ORTHO05D001909 3.6e-07 58.5 113 36.3
COL.COLO4_09761 Corchorus olitorius HOM05D001823 ORTHO05D001909 3.6e-07 58.5 118 34.7
Lalb_Chr06g0164611 Lupinus albus HOM05D001823 ORTHO05D001909 3.6e-07 58.5 113 38.1
CSS0010018 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 4.7e-07 58.2 114 36.0
Duzib213G1003 Durio zibethinus HOM05D001823 ORTHO05D001909 4.7e-07 58.2 113 35.4
Glyma.18G300500 Glycine max HOM05D001823 ORTHO05D001909 4.7e-07 58.2 113 35.4
Gohir.A04G010300 Gossypium hirsutum HOM05D001823 ORTHO05D001909 4.7e-07 58.2 113 34.5
Oeu034480.1 Olea europaea HOM05D001823 ORTHO05D001909 4.7e-07 58.2 79 44.3
MSTRG.24607 Avicennia marina HOM05D001823 ORTHO05D001909 6.1e-07 57.8 113 36.3
SMO337G0068 Selaginella moellendorffii HOM05D001823 ORTHO05D001909 6.1e-07 57.8 75 44.0
Sc07g0007100 Simmondsia chinensis HOM05D001823 ORTHO05D001909 6.1e-07 57.8 96 38.5
Cc03_g10350 Coffea canephora HOM05D001823 ORTHO05D001909 8.0e-07 57.4 115 35.7
Peaxi162Scf00286g00440 Petunia axillaris HOM05D001823 ORTHO05D001909 8.0e-07 57.4 113 35.4
CiPaw.01G107100 Carya illinoinensis HOM05D001823 ORTHO05D001909 1.0e-06 57.0 89 38.2
SGA_v2.0_scaffold290G47323 Striga asiatica HOM05D001823 ORTHO05D001909 1.0e-06 57.0 79 43.0
CiPaw.01G107400 Carya illinoinensis HOM05D001823 ORTHO05D001909 1.4e-06 56.6 89 40.4
DCAR_004838 Daucus carota HOM05D001823 ORTHO05D001909 1.4e-06 56.6 113 36.3
Hund10616 Selenicereus undatus HOM05D001823 ORTHO05D001909 1.4e-06 56.6 114 36.8
unitig_578.g16340 Utricularia gibba HOM05D001823 ORTHO05D001909 1.4e-06 56.6 113 33.6
Gohir.D01G072100 Gossypium hirsutum HOM05D001823 ORTHO05D001909 1.8e-06 56.2 113 35.4
Gorai.002G095100 Gossypium raimondii HOM05D001823 ORTHO05D001909 1.8e-06 56.2 113 35.4
Thecc.07G024400 Theobroma cacao HOM05D001823 ORTHO05D001909 1.8e-06 56.2 113 35.4
CSS0004218 Camellia sinensis var. sinensis HOM05D001823 ORTHO05D001909 2.3e-06 55.8 114 35.1
CANSAT78G0965 Cannabis sativa HOM05D001823 ORTHO05D001909 2.3e-06 55.8 98 35.7
CiPaw.01G107300 Carya illinoinensis HOM05D001823 ORTHO05D001909 2.3e-06 55.8 116 35.3
Os03g0845000 Oryza sativa ssp. japonica HOM05D001823 ORTHO05D001909 3.0e-06 55.5 113 33.6
PGR083G1523 Punica granatum HOM05D001823 ORTHO05D001909 3.0e-06 55.5 116 35.3
VMungo0540G1418 Vigna mungo HOM05D001823 ORTHO05D001909 3.0e-06 55.5 113 32.7
Gohir.A01G085800 Gossypium hirsutum HOM05D001823 ORTHO05D001909 4.0e-06 55.1 113 34.5
Gohir.A10G136000 Gossypium hirsutum HOM05D001823 ORTHO05D001909 4.0e-06 55.1 79 43.0
Gohir.D10G130600 Gossypium hirsutum HOM05D001823 ORTHO05D001909 4.0e-06 55.1 98 38.8
Gorai.011G144400 Gossypium raimondii HOM05D001823 ORTHO05D001909 4.0e-06 55.1 98 38.8
Pp3c2_10320 Physcomitrium patens HOM05D001823 ORTHO05D001909 4.0e-06 55.1 117 35.9
HPP92_020234 Vanilla planifolia HOM05D001823 ORTHO05D001909 4.0e-06 55.1 113 32.7
Duzib268G0131 Durio zibethinus HOM05D001823 ORTHO05D001909 5.2e-06 54.7 113 36.3
Duzib268G0348 Durio zibethinus HOM05D001823 ORTHO05D001909 5.2e-06 54.7 113 36.3
TAR626G1148 Trochodendron aralioides HOM05D001823 ORTHO05D001909 5.2e-06 54.7 95 34.7
Oeu034545.1 Olea europaea HOM05D001823 ORTHO05D001909 6.7e-06 54.3 113 32.7
Oeu034546.1 Olea europaea HOM05D001823 ORTHO05D001909 6.7e-06 54.3 113 32.7
CAN.G710.31 Capsicum annuum HOM05D001823 ORTHO05D001909 8.8e-06 53.9 113 33.6
CDE02G0630 Ceratophyllum demersum HOM05D001823 ORTHO05D001909 8.8e-06 53.9 120 34.2
HPP92_020215 Vanilla planifolia HOM05D001823 ORTHO05D001909 8.8e-06 53.9 113 31.9


User provided reference genes

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