Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 4.0e-204 714.5 359 100.0
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 2.0e-195 685.6 360 96.9
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 5.8e-195 684.1 360 96.7
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.1e-190 669.8 360 94.7
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 2.4e-185 652.1 356 93.8
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 1.4e-169 599.7 363 84.6
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 1.9e-169 599.4 363 84.6
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 7.1e-169 597.4 360 84.7
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 2.6e-155 552.4 360 79.7
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 3.2e-153 545.4 360 78.9
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 7.2e-145 517.7 330 80.6
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 4.2e-137 491.9 361 75.3
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.8e-135 486.5 361 74.8
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-131 473.8 363 74.1
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.1e-129 467.2 360 72.8
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 3.9e-127 458.8 365 71.2
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 1.3e-114 417.2 358 62.3
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.1e-81 307.8 352 55.7
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 3.2e-68 263.1 159 85.5
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 1.5e-65 254.2 164 79.9
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 9.0e-63 245.0 143 88.8
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 1.1e-55 221.5 409 39.6
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.1e-52 211.5 407 38.8
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 7.9e-51 205.3 412 38.3
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 5.6e-49 199.1 406 37.2
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 5.6e-49 199.1 416 39.2
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.6e-48 197.6 434 36.9
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 2.1e-48 197.2 421 36.6
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 3.7e-48 196.4 330 40.9
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 1.4e-47 194.5 412 37.9
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.8e-47 194.1 328 42.1
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.0e-47 193.0 414 37.4
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 9.0e-47 191.8 401 37.4
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 1.5e-46 191.0 427 39.3
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.5e-46 191.0 298 45.3
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.0e-46 190.7 414 37.0
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 2.0e-46 190.7 331 40.2
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.4e-46 189.9 432 36.1
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 3.4e-46 189.9 404 40.1
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 4.5e-46 189.5 410 37.3
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 5.8e-46 189.1 354 40.7
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 7.6e-46 188.7 308 44.5
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 7.6e-46 188.7 345 40.6
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 1.3e-45 188.0 387 39.0
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 4.9e-45 186.0 406 36.9
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.5e-45 185.7 398 37.7
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.4e-44 184.5 413 37.5
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 1.9e-44 184.1 328 39.9
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 1.9e-44 184.1 402 35.8
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 2.5e-44 183.7 381 37.8
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 7.1e-44 182.2 406 36.2
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 9.3e-44 181.8 327 40.1
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 9.3e-44 181.8 430 36.0
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 1.2e-43 181.4 107 87.9
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 1.2e-43 181.4 107 87.9
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.6e-43 181.0 415 35.9
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 3.5e-43 179.9 324 40.1
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 6.0e-43 179.1 414 37.9
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 8.7e-42 175.3 404 35.9
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 9.6e-41 171.8 423 34.0
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.3e-40 171.4 334 39.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.1e-40 170.6 300 41.0
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 4.8e-40 169.5 352 38.6
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 6.2e-40 169.1 390 37.4
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 6.2e-40 169.1 319 38.6
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 6.2e-40 169.1 411 36.5
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 8.2e-40 168.7 431 34.1
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.1e-39 168.3 446 33.2
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 6.9e-39 165.6 367 35.7
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 1.5e-38 164.5 350 36.3
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 4.5e-38 162.9 320 37.8
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.3e-37 161.4 378 35.7
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 2.9e-37 160.2 352 37.8
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 5.0e-37 159.5 346 37.9
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 8.4e-37 158.7 360 37.8
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 2.5e-36 157.1 414 34.5
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 5.5e-36 156.0 296 39.9
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 5.5e-36 156.0 317 36.6
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 5.5e-36 156.0 346 37.6
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 9.3e-36 155.2 392 34.9
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 9.3e-36 155.2 355 34.4
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.6e-35 154.5 323 37.8
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.1e-35 154.1 321 37.7
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 3.5e-35 153.3 365 36.7
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 4.6e-35 152.9 308 39.6
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 4.6e-35 152.9 321 37.4
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 6.1e-35 152.5 329 35.9
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 6.1e-35 152.5 329 35.9
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 6.1e-35 152.5 306 38.2
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 7.9e-35 152.1 317 36.9
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 1.0e-34 151.8 433 33.3
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 5.1e-34 149.4 367 35.4
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 8.7e-34 148.7 444 32.4
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 1.1e-33 148.3 352 37.2
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 3.3e-33 146.7 258 41.5
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 2.8e-32 143.7 358 34.4
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 3.7e-32 143.3 346 35.3
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 4.8e-32 142.9 332 36.7
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.1e-31 141.7 274 41.6
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 1.4e-31 141.4 327 34.6
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 1.8e-31 141.0 333 35.7
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 2.4e-31 140.6 327 36.1
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.4e-31 140.6 364 34.1
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 3.1e-31 140.2 354 35.0
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 9.0e-31 138.7 76 90.8
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 1.2e-30 138.3 388 33.2
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 2.0e-30 137.5 449 31.6
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.7e-29 134.4 336 35.4
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 5.0e-29 132.9 311 36.7
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 8.5e-29 132.1 328 33.5
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 1.4e-28 131.3 272 37.9
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 3.2e-28 130.2 330 33.3
CARHR240540 Cardamine hirsuta HOM05D005141 ORTHO05D006250 4.2e-28 129.8 78 83.3
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 7.2e-28 129.0 452 30.1
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 1.2e-27 128.3 233 39.5
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.2e-27 128.3 330 34.5
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.6e-27 126.3 331 34.1
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.8e-26 124.4 250 36.8
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 1.8e-26 124.4 266 38.0
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.1e-25 121.7 171 44.4
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 2.5e-25 120.6 219 39.7
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 8.2e-24 115.5 306 33.0
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 1.4e-23 114.8 375 31.2
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 2.6e-22 110.5 317 33.4
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.1e-20 105.1 296 32.8
CARHR240550 Cardamine hirsuta HOM05D005141 ORTHO05D006250 1.2e-19 101.7 60 81.7
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 6.1e-19 99.4 212 37.3
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 1.8e-18 97.8 346 30.6
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 5.7e-17 92.8 189 37.6
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 3.7e-16 90.1 143 42.0
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 4.1e-15 86.7 193 36.8
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 7.0e-15 85.9 141 39.7
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 9.1e-15 85.5 136 41.2
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 2.9e-13 80.5 119 42.0
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 1.9e-12 77.8 163 36.2
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.5e-12 77.4 187 34.2
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 5.5e-12 76.3 68 57.4
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 2.7e-11 73.9 252 31.7
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 3.9e-10 70.1 110 40.0
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 6.3e-08 62.8 158 32.9
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 9.1e-07 58.9 87 37.9
ClCG04G010520 Citrullus lanatus HOM05D002346 ORTHO05D002452 2.6e-06 57.4 124 34.7


User provided reference genes

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