Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01009 Brassica carinata HOM05D009574 ORTHO05D012637 2.2e-111 405.6 197 100.0
BcaB07g32682 Brassica carinata HOM05D009574 ORTHO05D012637 2.2e-103 379.0 191 95.8
BcaNung02594 Brassica carinata HOM05D009574 ORTHO05D012637 4.0e-97 358.2 212 84.9
C05p29470 Brassica napus HOM05D009574 ORTHO05D000174 7.8e-85 317.4 184 85.9
BolC5t31677H Brassica oleracea HOM05D009574 ORTHO05D000174 7.8e-85 317.4 184 85.9
C07p39810 Brassica napus HOM05D009574 ORTHO05D000174 1.6e-82 309.7 184 84.2
BcaC03g15564 Brassica carinata HOM05D009574 ORTHO05D000174 4.6e-77 291.6 178 79.8
C03p87220 Brassica napus HOM05D009574 ORTHO05D012637 2.6e-72 275.8 180 77.2
BolC2t09283H Brassica oleracea HOM05D009574 ORTHO05D000174 2.6e-56 222.6 139 77.7
BolC9t56585H Brassica oleracea HOM05D009574 ORTHO05D012637 1.6e-50 203.4 184 63.6
BolC7t44510H Brassica oleracea HOM05D009574 ORTHO05D012637 5.7e-43 178.3 118 78.8
C05p28420 Brassica napus HOM05D009574 ORTHO05D000174 8.7e-36 154.5 135 63.7
BolC5t31564H Brassica oleracea HOM05D009574 ORTHO05D032615 8.7e-36 154.5 135 63.7
BNapus_Darmor_BZH_scaffold_278p00060 Brassica napus HOM05D009574 ORTHO05D012637 4.8e-34 148.7 79 91.1
BcaC05g26981 Brassica carinata HOM05D009574 ORTHO05D032615 8.2e-34 147.9 133 63.2
C07p16110 Brassica napus HOM05D009574 ORTHO05D012637 1.2e-32 144.1 176 43.8
C02p33390 Brassica napus HOM05D000353 ORTHO05D015401 1.5e-32 143.7 172 45.9
AT2G05642 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 4.5e-32 142.1 204 38.7
C07p10980 Brassica napus HOM05D009574 ORTHO05D032615 1.3e-31 140.6 69 95.7
BolC7t41563H Brassica oleracea HOM05D009574 ORTHO05D000174 1.3e-31 140.6 69 95.7
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 3.2e-30 136.0 197 37.6
BcaB01g05981 Brassica carinata HOM05D009574 ORTHO05D012637 2.5e-27 126.3 165 41.8
BcaC05g25301 Brassica carinata HOM05D011161 ORTHO05D012637 2.1e-21 106.7 144 43.1
BolC5t29929H Brassica oleracea HOM05D011161 ORTHO05D012637 2.1e-21 106.7 144 43.1
AL1G48730 Arabidopsis lyrata HOM05D000353 ORTHO05D031316 1.8e-20 103.6 142 40.1
BcaC01g00855 Brassica carinata HOM05D011161 ORTHO05D015401 5.7e-19 98.6 149 41.6
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 8.5e-15 84.7 165 31.5
BcaC01g02105 Brassica carinata HOM05D011161 ORTHO05D012637 3.6e-13 79.3 80 53.8
BolC5t33123H Brassica oleracea HOM05D000353 ORTHO05D015401 4.7e-13 79.0 75 45.3
Thhalv10029348m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 5.9e-08 62.0 200 22.0
BraA09t40707Z Brassica rapa HOM05D000353 ORTHO05D000174 7.7e-08 61.6 194 24.7
Thhalv10000499m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 1.0e-07 61.2 200 22.5
C07p32420 Brassica napus HOM05D009574 ORTHO05D015401 1.3e-07 60.8 36 58.3
BolC9t57730H Brassica oleracea HOM05D009574 ORTHO05D015401 1.3e-07 60.8 36 58.3
BcaC01g00750 Brassica carinata HOM05D000353 ORTHO05D000174 2.2e-07 60.1 180 25.0
A03p66100 Brassica napus HOM05D000353 ORTHO05D000174 3.8e-07 59.3 194 24.2
A05p24550 Brassica napus HOM05D000353 ORTHO05D000174 3.8e-07 59.3 194 24.2
Thhalv10002301m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 6.5e-07 58.5 200 21.0
Thhalv10015289m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 8.5e-07 58.2 205 22.0
BcaC02g07613 Brassica carinata HOM05D000353 ORTHO05D000174 1.1e-06 57.8 172 27.3
BcaB06g27108 Brassica carinata HOM05D000353 ORTHO05D000174 1.9e-06 57.0 183 25.1
A09p11230 Brassica napus HOM05D000353 ORTHO05D000174 1.9e-06 57.0 173 25.4
BcaB05g22552 Brassica carinata HOM05D000353 ORTHO05D000174 4.2e-06 55.8 74 35.1
A02p32050 Brassica napus HOM05D000353 ORTHO05D000174 5.5e-06 55.5 174 25.3
BraA02t08216Z Brassica rapa HOM05D000353 ORTHO05D000174 5.5e-06 55.5 174 25.3
BraA03t14653Z Brassica rapa HOM05D000353 ORTHO05D000174 5.5e-06 55.5 70 38.6
A07p36560 Brassica napus HOM05D000353 ORTHO05D000174 9.4e-06 54.7 198 25.3
C09p45320 Brassica napus HOM05D000353 ORTHO05D000174 9.4e-06 54.7 186 23.7


User provided reference genes

Program Settings