Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.7e-135 486.1 260 100.0
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 7.5e-128 460.7 272 93.4
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 7.5e-128 460.7 272 93.4
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 1.2e-112 410.2 280 83.9
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 3.0e-108 395.6 283 82.3
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.2e-101 373.6 287 76.3
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 4.8e-98 361.7 290 74.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-97 360.5 285 74.7
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.8e-92 343.2 280 72.1
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 7.4e-91 337.8 279 72.8
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.6e-90 336.7 286 73.1
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.2e-87 326.2 284 68.7
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 6.0e-85 318.2 287 70.7
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 2.1e-82 309.7 275 70.2
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 5.8e-80 301.6 279 66.3
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.8e-73 280.0 198 82.3
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 5.9e-72 275.0 278 61.9
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 4.1e-65 252.3 290 57.6
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 4.5e-64 248.8 214 69.2
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 2.2e-55 219.9 211 67.3
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 6.3e-34 148.7 293 36.5
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.5e-32 142.5 261 37.9
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.6e-31 138.3 293 36.2
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 1.9e-30 137.1 288 37.8
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 3.0e-28 129.8 291 36.4
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.7e-26 124.0 289 33.6
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.7e-26 122.9 293 36.2
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 6.3e-26 122.1 289 34.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.1e-25 121.3 288 35.1
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.4e-25 120.9 296 35.8
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.8e-25 120.6 264 34.1
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 4.1e-25 119.4 291 36.1
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.6e-24 117.5 298 35.2
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 2.0e-24 117.1 293 34.5
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 2.0e-24 117.1 274 36.1
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.7e-24 116.7 293 34.5
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.5e-24 116.3 293 36.9
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 4.5e-24 115.9 294 34.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.5e-24 115.9 296 33.8
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 7.8e-24 115.2 286 33.2
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 1.0e-23 114.8 302 34.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.3e-23 114.4 279 34.8
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 8.6e-23 111.7 263 35.0
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 1.5e-22 110.9 264 32.6
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.9e-22 110.5 276 34.8
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.9e-22 110.5 271 35.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 1.9e-22 110.5 261 32.2
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 3.3e-22 109.8 285 31.6
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.3e-22 109.8 264 33.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 9.5e-22 108.2 292 34.2
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 9.5e-22 108.2 263 32.7
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.2e-21 107.8 281 33.5
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.6e-21 107.5 287 33.4
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 2.8e-21 106.7 272 33.1
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 3.6e-21 106.3 333 33.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 6.1e-21 105.5 260 34.2
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 8.0e-21 105.1 280 33.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 8.0e-21 105.1 268 34.7
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 1.0e-20 104.8 272 34.6
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.4e-20 104.4 285 34.7
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.8e-20 104.0 296 32.1
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.8e-20 104.0 299 32.1
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 2.3e-20 103.6 283 31.4
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 3.0e-20 103.2 263 32.3
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 3.0e-20 103.2 263 32.3
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 3.0e-20 103.2 300 33.0
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 6.8e-20 102.1 269 33.1
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.8e-20 102.1 251 33.5
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 8.9e-20 101.7 266 35.0
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.2e-19 101.3 266 35.0
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 3.4e-19 99.8 285 30.9
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 5.8e-19 99.0 298 30.9
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 5.8e-19 99.0 292 32.5
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.3e-18 97.8 273 32.2
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.9e-18 96.7 267 34.1
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 4.9e-18 95.9 280 30.7
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.4e-17 94.4 285 33.0
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 4.1e-17 92.8 278 31.7
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 4.1e-17 92.8 288 29.2
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 5.4e-17 92.4 292 32.2
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 9.2e-17 91.7 257 31.9
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.6e-16 90.9 277 30.3
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 1.6e-16 90.9 269 33.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.7e-16 90.1 261 30.7
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 2.7e-16 90.1 291 28.5
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 7.8e-16 88.6 256 29.3
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.0e-15 88.2 261 31.0
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 2.3e-15 87.0 273 30.4
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 3.0e-15 86.7 268 29.9
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 3.0e-15 86.7 164 36.6
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 3.0e-15 86.7 254 29.1
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 5.0e-15 85.9 265 31.3
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 8.6e-15 85.1 284 32.7
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.5e-14 84.3 250 32.4
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 2.5e-14 83.6 321 31.2
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 4.3e-14 82.8 279 30.8
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 5.6e-14 82.4 269 29.7
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 5.6e-14 82.4 347 28.5
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 7.3e-14 82.0 290 26.9
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 7.3e-14 82.0 165 40.0
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.2e-13 81.3 259 31.7
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.2e-13 81.3 303 29.7
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 2.8e-13 80.1 272 28.3
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 4.7e-13 79.3 259 31.3
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 4.7e-13 79.3 267 28.8
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.7e-13 79.3 297 24.9
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 4.7e-13 79.3 283 29.0
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 6.2e-13 79.0 349 29.2
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 1.1e-12 78.2 305 30.5
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 1.4e-12 77.8 250 31.2
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.3e-12 77.0 302 28.8
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 4.0e-12 76.3 257 31.1
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 5.2e-12 75.9 250 30.0
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 5.2e-12 75.9 261 28.0
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 5.2e-12 75.9 269 29.0
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 8.9e-12 75.1 266 27.8
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 8.9e-12 75.1 193 35.8
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.5e-11 74.3 293 27.6
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 2.0e-11 73.9 253 29.2
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 2.0e-11 73.9 288 28.8
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 2.0e-11 73.9 257 25.7
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 2.6e-11 73.6 311 28.0
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 4.4e-11 72.8 170 33.5
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 4.4e-11 72.8 283 27.6
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 5.8e-11 72.4 268 30.2
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 7.5e-11 72.0 254 29.1
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 9.8e-11 71.6 281 28.8
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 2.2e-10 70.5 261 31.8
Pp3c2_32720 Physcomitrium patens HOM05D003500 ORTHO05D003919 2.2e-10 70.5 283 29.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.2e-10 70.5 256 30.9
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.9e-10 70.1 260 28.5
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 3.7e-10 69.7 261 29.1
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 4.9e-10 69.3 269 27.5
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.9e-10 69.3 274 29.2
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 6.4e-10 68.9 289 28.4
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 8.3e-10 68.6 251 29.9
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.4e-09 67.8 126 33.3
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.4e-09 67.8 311 26.0
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.4e-09 67.8 292 29.5
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.9e-09 67.4 286 29.0
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.4e-09 67.0 130 37.7
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.4e-09 67.0 265 28.3
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 4.1e-09 66.2 105 42.9
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 4.1e-09 66.2 169 32.0
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 5.4e-09 65.9 262 29.4
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 9.2e-09 65.1 261 29.1
SGA_v2.0_scaffold37G14827 Striga asiatica HOM05D003500 ORTHO05D003919 9.2e-09 65.1 265 26.4
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.2e-08 64.7 262 28.2
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.2e-08 64.7 253 27.7
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 1.2e-08 64.7 303 24.8
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 1.6e-08 64.3 301 28.6
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 2.1e-08 63.9 259 28.6
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 7.8e-08 62.0 259 30.1
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 1.3e-07 61.2 245 28.2
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.3e-07 61.2 230 30.0
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.7e-07 60.8 246 29.7
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 3.0e-07 60.1 276 27.9
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 3.0e-07 60.1 174 31.0
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 3.9e-07 59.7 133 33.8
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.0e-07 59.3 133 33.1
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 5.0e-07 59.3 330 26.1
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 6.6e-07 58.9 248 25.8
Phvul.010G150500 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 6.6e-07 58.9 319 27.9
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 8.6e-07 58.5 128 32.8
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.1e-06 58.2 293 27.3
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.5e-06 57.8 259 29.3
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 1.9e-06 57.4 281 28.1
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 3.3e-06 56.6 288 25.3
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 7.3e-06 55.5 128 32.0
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 7.3e-06 55.5 258 26.0


User provided reference genes

Program Settings