Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 0.0e+00 1336.2 876 100.0
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 0.0e+00 1336.2 876 100.0
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1266.5 876 95.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 0.0e+00 1167.9 880 88.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 0.0e+00 1150.2 878 89.9
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-300 1036.6 872 84.6
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 2.2e-280 969.1 894 80.8
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-269 932.9 894 78.4
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 9.9e-257 890.6 889 74.8
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.3e-253 879.4 889 74.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 9.6e-236 820.8 886 74.0
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.3e-232 810.4 886 71.7
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 6.1e-230 801.6 880 72.6
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 3.0e-229 799.3 892 72.8
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-227 793.9 880 70.8
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.8e-227 792.7 894 72.5
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 3.7e-227 792.3 895 72.3
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 8.2e-227 791.2 895 72.6
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 6.9e-226 788.1 873 72.4
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 2.6e-225 786.2 907 71.6
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 7.7e-225 784.6 892 71.4
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.2e-224 783.1 887 72.6
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.9e-223 780.0 886 72.2
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 1.6e-222 776.9 896 70.1
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.9e-215 753.4 890 69.4
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.2e-196 691.0 891 62.9
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 8.9e-189 664.8 791 60.4
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 4.1e-186 656.0 908 57.7
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 7.0e-186 655.2 843 60.6
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.5e-185 652.5 804 63.4
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 2.3e-184 650.2 905 59.2
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 5.2e-181 639.0 888 57.0
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.5e-180 637.5 805 65.0
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 9.8e-180 634.8 893 58.2
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.3e-179 634.4 792 66.2
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.7e-179 634.0 806 64.3
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.8e-178 630.6 835 61.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.2e-177 627.9 888 60.8
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.2e-177 627.9 888 59.8
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.6e-177 627.5 805 65.5
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 4.6e-177 625.9 888 55.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 3.0e-176 623.2 801 61.5
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 3.9e-176 622.9 857 60.3
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.3e-175 619.4 868 60.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 4.0e-173 612.8 804 64.8
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 2.0e-172 610.5 806 63.4
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.4e-172 609.4 901 50.6
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 4.4e-172 609.4 806 62.7
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.8e-172 609.0 878 59.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 7.5e-172 608.6 786 59.8
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.9e-171 606.7 725 66.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 4.9e-171 605.9 891 56.6
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-170 604.7 895 58.7
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.4e-170 604.4 804 64.6
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.9e-170 604.0 901 57.8
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.4e-170 603.6 808 62.3
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 2.4e-170 603.6 804 63.9
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 3.2e-170 603.2 806 58.7
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 1.2e-169 601.3 858 58.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 1.2e-169 601.3 798 63.7
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 2.0e-169 600.5 895 58.2
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.7e-169 600.1 853 62.6
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 3.5e-169 599.7 896 58.7
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 6.0e-169 599.0 890 58.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 7.8e-169 598.6 805 62.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 7.8e-169 598.6 890 58.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 7.8e-169 598.6 800 62.0
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.3e-168 597.8 883 56.9
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 1.7e-168 597.4 890 59.1
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 2.3e-168 597.0 804 62.1
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 3.0e-168 596.7 805 64.5
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 6.6e-168 595.5 881 58.5
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.3e-167 593.2 883 59.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.3e-167 593.2 811 58.2
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.3e-167 592.0 892 58.4
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 7.3e-167 592.0 842 58.9
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 9.5e-167 591.7 806 63.6
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.5e-167 591.7 841 59.6
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.2e-166 591.3 804 61.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 2.1e-166 590.5 806 61.3
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 6.2e-166 589.0 806 62.3
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 6.2e-166 589.0 890 57.9
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.1e-165 588.2 805 63.1
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 4.0e-165 586.3 806 62.2
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.0e-165 586.3 805 62.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 5.2e-165 585.9 874 59.4
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 8.9e-165 585.1 787 63.9
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.2e-164 584.7 804 63.8
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.0e-164 583.9 800 62.0
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.6e-164 583.6 806 61.8
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.6e-164 583.6 804 64.1
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.4e-164 582.8 804 64.1
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.3e-163 581.3 795 62.3
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.3e-163 581.3 868 54.0
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 1.7e-163 580.9 959 52.9
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 4.9e-163 579.3 803 57.3
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 6.4e-163 578.9 804 63.9
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 8.3e-163 578.6 805 57.3
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.1e-162 578.2 806 61.5
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.4e-162 577.8 893 57.7
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 5.4e-162 575.9 868 56.3
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 7.1e-162 575.5 767 56.6
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 9.2e-162 575.1 794 62.7
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.2e-161 574.7 800 63.5
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 2.1e-161 573.9 895 57.4
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 6.0e-161 572.4 792 60.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.0e-160 570.1 803 62.1
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.1e-160 569.3 806 61.5
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.1e-159 568.2 860 60.5
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.5e-159 567.8 801 60.5
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.5e-159 567.8 877 58.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 7.3e-159 565.5 806 60.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 7.3e-159 565.5 806 59.9
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 9.5e-159 565.1 883 56.9
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 3.6e-158 563.1 806 62.7
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.2e-156 558.1 760 61.6
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 2.0e-156 557.4 840 56.4
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 5.4e-154 549.3 780 61.9
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.1e-153 547.4 804 59.2
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.3e-152 544.7 860 58.3
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 5.1e-152 542.7 806 61.5
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 8.7e-152 542.0 894 53.1
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 8.7e-152 542.0 819 58.2
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.9e-151 540.8 804 55.3
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.6e-150 536.6 857 55.9
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 1.5e-148 531.2 878 52.7
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 6.4e-147 525.8 818 54.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 4.2e-146 523.1 803 57.2
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.7e-145 520.4 801 57.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.6e-145 519.6 742 60.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.3e-144 517.3 796 57.5
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.4e-138 496.1 817 56.2
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.4e-133 480.7 731 50.8
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 5.3e-133 479.6 804 56.0
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 2.2e-131 474.2 794 58.1
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 5.5e-130 469.5 782 53.2
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.5e-127 461.5 725 58.6
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.5e-127 461.5 820 53.2
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.3e-127 459.9 685 61.5
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.8e-126 457.2 776 49.4
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 6.2e-126 456.1 863 48.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 5.8e-124 449.5 638 62.4
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 2.7e-121 440.7 685 63.1
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.3e-117 426.4 889 46.7
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.0e-115 419.9 939 45.5
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.3e-111 406.8 837 43.0
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 9.4e-106 389.0 786 46.9
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-98 365.2 845 47.9
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 3.8e-91 340.5 435 52.4
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 5.0e-91 340.1 587 50.6
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.2e-90 337.4 651 59.6
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.2e-90 337.4 906 40.5
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 9.4e-90 335.9 646 55.3
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.4e-90 335.9 743 44.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-89 333.6 478 49.6
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 3.0e-88 330.9 928 43.6
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 1.7e-86 325.1 325 55.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.1e-85 322.4 646 61.6
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.6e-76 292.0 399 50.6
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.8e-73 281.2 306 61.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.6e-71 274.6 308 62.3
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 2.9e-67 261.2 606 49.7
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 7.0e-61 240.0 263 60.1
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 4.6e-52 210.7 231 52.4
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 3.0e-43 181.4 222 48.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.3e-42 177.9 311 56.6
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.4e-39 167.5 202 47.5
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-31 142.5 170 46.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 8.7e-27 126.7 86 72.1
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 5.6e-26 124.0 83 72.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 5.8e-23 114.0 119 54.6
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 6.0e-20 104.0 122 46.7
BcaC01g01003 Brassica carinata HOM05D003722 ORTHO05D004589 9.0e-16 90.1 106 62.3
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.3e-14 86.3 168 35.7
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 1.4e-13 82.8 236 60.6
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 3.5e-12 78.2 177 33.3
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.7e-10 70.9 63 49.2
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 2.8e-09 68.6 193 28.0


User provided reference genes

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