Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01000 Brassica carinata HOM05D005951 ORTHO05D007025 4.3e-127 458.0 229 100.0
BolC3t20971H Brassica oleracea HOM05D005951 ORTHO05D007025 4.3e-127 458.0 229 100.0
BraA08t33722Z Brassica rapa HOM05D005951 ORTHO05D007025 9.0e-125 450.3 230 98.7
C03p86770 Brassica napus HOM05D005951 ORTHO05D007025 1.3e-123 446.4 230 97.8
BcaB03g12809 Brassica carinata HOM05D005951 ORTHO05D007025 8.4e-123 443.7 229 96.1
A08p17720 Brassica napus HOM05D005951 ORTHO05D007025 1.1e-122 443.4 226 98.7
BraA01t00476Z Brassica rapa HOM05D000526 ORTHO05D007025 7.1e-122 440.7 229 95.2
Sp7g31000 Schrenkiella parvula HOM05D005951 ORTHO05D007025 9.3e-122 440.3 229 94.3
Thhalv10026154m.g Eutrema salsugineum HOM05D005951 ORTHO05D007025 2.7e-121 438.7 229 93.4
BcaC09g52137 Brassica carinata HOM05D005951 ORTHO05D007025 8.7e-120 433.7 229 93.9
C01p05390 Brassica napus HOM05D000526 ORTHO05D000956 1.5e-119 433.0 227 94.3
AL7G18300 Arabidopsis lyrata HOM05D005951 ORTHO05D007025 1.9e-119 432.6 229 92.6
BolC1t00519H Brassica oleracea HOM05D000526 ORTHO05D007025 4.3e-119 431.4 225 94.7
Carub.0007s0721 Capsella rubella HOM05D005951 ORTHO05D007025 1.2e-116 423.3 230 90.9
AT4G33250 Arabidopsis thaliana HOM05D005951 ORTHO05D007025 2.6e-116 422.2 229 91.7
A03p61920 Brassica napus HOM05D000526 ORTHO05D007025 1.3e-115 419.9 253 85.0
THA.LOC104803783 Tarenaya hassleriana HOM05D005951 ORTHO05D007025 4.2e-106 388.3 229 80.3
C07p59570 Brassica napus HOM05D005951 ORTHO05D007025 9.3e-106 387.1 229 85.2
BcaNung02163 Brassica carinata HOM05D005951 ORTHO05D007025 2.7e-105 385.6 229 84.7
Aa31LG5G9380 Aethionema arabicum HOM05D005951 ORTHO05D007025 7.9e-105 384.0 224 82.1
Potri.006G136500 Populus trichocarpa HOM05D005951 ORTHO05D007025 3.0e-104 382.1 236 80.1
Duzib168G0975 Durio zibethinus HOM05D005951 ORTHO05D007025 6.7e-104 380.9 234 79.9
FAN28G0037 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.7e-104 380.6 226 81.0
FAN28G0822 Fragaria x ananassa HOM05D005951 ORTHO05D007025 8.7e-104 380.6 226 81.0
FvH4_1g09390 Fragaria vesca HOM05D005951 ORTHO05D007025 2.5e-103 379.0 226 80.5
FAN19G2090 Fragaria x ananassa HOM05D005951 ORTHO05D007025 2.5e-103 379.0 226 80.5
Gorai.009G038100 Gossypium raimondii HOM05D005951 ORTHO05D007025 2.5e-103 379.0 234 79.5
FAN26G0600 Fragaria x ananassa HOM05D005951 ORTHO05D007025 7.4e-103 377.5 226 80.1
FAN26G2189 Fragaria x ananassa HOM05D005951 ORTHO05D007025 7.4e-103 377.5 226 79.6
Cpa.g.sc82.63 Carica papaya HOM05D005951 ORTHO05D007025 1.6e-102 376.3 238 77.7
RcHm_v2.0_Chr2g0095941 Rosa chinensis HOM05D005951 ORTHO05D007025 1.6e-102 376.3 224 79.9
Atru.chr7.1767 Acer truncatum HOM05D005951 ORTHO05D007025 4.8e-102 374.8 233 78.5
TAR383G1060 Trochodendron aralioides HOM05D005951 ORTHO05D007025 4.8e-102 374.8 232 78.4
Gohir.D05G037600 Gossypium hirsutum HOM05D005951 ORTHO05D007025 6.2e-102 374.4 234 79.1
Sabra06G0106700 Salix brachista HOM05D005951 ORTHO05D007025 6.2e-102 374.4 236 78.4
Thecc.09G070300 Theobroma cacao HOM05D005951 ORTHO05D007025 8.2e-102 374.0 233 78.5
Gohir.A05G036100 Gossypium hirsutum HOM05D005951 ORTHO05D007025 1.1e-101 373.6 242 77.3
Potri.018G063600 Populus trichocarpa HOM05D005951 ORTHO05D007025 1.4e-101 373.2 239 77.0
GSVIVG01015014001 Vitis vinifera HOM05D005951 ORTHO05D007025 1.4e-101 373.2 232 77.6
CSS0032580 Camellia sinensis var. sinensis HOM05D005951 ORTHO05D007025 2.4e-101 372.5 236 76.7
QL11p002956 Quercus lobata HOM05D005951 ORTHO05D007025 2.4e-101 372.5 234 77.4
Nitab4.5_0000170g0090 Nicotiana tabacum HOM05D005951 ORTHO05D007025 3.1e-101 372.1 232 75.9
Nn6g35632 Nelumbo nucifera HOM05D005951 ORTHO05D007025 1.2e-100 370.2 233 77.7
CiPaw.03G200400 Carya illinoinensis HOM05D005951 ORTHO05D007025 1.5e-100 369.8 227 78.4
Dinv25506 Davidia involucrata HOM05D005951 ORTHO05D007025 1.5e-100 369.8 238 77.3
Aqoxy7G04154 Aquilegia oxysepala HOM05D005951 ORTHO05D007025 2.0e-100 369.4 232 76.7
CiPaw.04G140200 Carya illinoinensis HOM05D005951 ORTHO05D007025 2.6e-100 369.0 227 78.0
ClCG03G014750 Citrullus lanatus HOM05D005951 ORTHO05D007025 2.6e-100 369.0 233 75.5
Duzib150G0422 Durio zibethinus HOM05D005951 ORTHO05D007025 4.5e-100 368.2 235 77.0
FAN23G1113 Fragaria x ananassa HOM05D005951 ORTHO05D007025 4.5e-100 368.2 230 77.8
Cc06_g12700 Coffea canephora HOM05D005951 ORTHO05D007025 5.8e-100 367.9 230 77.8
MD02G1102200 Malus domestica HOM05D005951 ORTHO05D007025 5.8e-100 367.9 227 77.1
Actinidia39617 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.3e-99 366.7 234 76.9
Eucgr.C03197 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.3e-99 366.7 224 78.1
Eucgr.L02230 Eucalyptus grandis HOM05D005951 ORTHO05D007025 1.3e-99 366.7 224 78.1
CsaV3_1G041410 Cucumis sativus L. HOM05D005951 ORTHO05D007025 2.2e-99 365.9 232 75.0
Manes.03G044600 Manihot esculenta HOM05D005951 ORTHO05D007025 2.9e-99 365.5 235 75.7
Manes.16G090500 Manihot esculenta HOM05D005951 ORTHO05D007025 2.9e-99 365.5 240 75.8
ATR0317G112 Amborella trichopoda HOM05D005951 ORTHO05D007025 4.9e-99 364.8 232 75.0
Sed0027227 Sechium edule HOM05D005951 ORTHO05D007025 4.9e-99 364.8 233 74.7
COL.COLO4_21208 Corchorus olitorius HOM05D005951 ORTHO05D007025 6.5e-99 364.4 234 77.4
Ciclev10009369m.g Citrus clementina HOM05D005951 ORTHO05D007025 1.1e-98 363.6 230 76.1
Sed0006808 Sechium edule HOM05D005951 ORTHO05D007025 1.9e-98 362.8 233 74.2
Peaxi162Scf00474g00521 Petunia axillaris HOM05D005951 ORTHO05D007025 2.5e-98 362.5 227 74.9
Cfa002937 Carpinus fangiana HOM05D005951 ORTHO05D007025 3.2e-98 362.1 219 79.5
Lsat_1_v5_gn_5_138841 Lactuca sativa HOM05D005951 ORTHO05D007025 4.2e-98 361.7 224 76.8
Glyma.17G045500 Glycine max HOM05D005951 ORTHO05D007025 5.5e-98 361.3 232 75.4
Lj4g0000458 Lotus japonicus HOM05D005951 ORTHO05D007025 7.1e-98 360.9 227 75.8
BraA03t15230Z Brassica rapa HOM05D005951 ORTHO05D007025 9.3e-98 360.5 192 92.7
arahy.Tifrunner.gnm1.ann1.JRQ3DB Arachis hypogaea HOM05D005951 ORTHO05D007025 1.2e-97 360.1 230 75.7
MD15G1223700 Malus domestica HOM05D005951 ORTHO05D007025 1.2e-97 360.1 217 78.3
arahy.Tifrunner.gnm1.ann1.7AU96Q Arachis hypogaea HOM05D005951 ORTHO05D007025 1.6e-97 359.8 231 75.3
CAN.G54.13 Capsicum annuum HOM05D005951 ORTHO05D007025 1.6e-97 359.8 232 73.7
VMungo1215G3086 Vigna mungo HOM05D005951 ORTHO05D007025 1.6e-97 359.8 232 75.0
MSTRG.26500 Avicennia marina HOM05D005951 ORTHO05D007025 2.1e-97 359.4 236 75.0
PGR044G1586 Punica granatum HOM05D005951 ORTHO05D007025 2.1e-97 359.4 229 78.6
PGSC0003DMG400013572 Solanum tuberosum HOM05D005951 ORTHO05D007025 3.5e-97 358.6 224 75.9
Prupe.7G192100 Prunus persica HOM05D005951 ORTHO05D007025 4.6e-97 358.2 233 73.4
TWI34G0930 Tripterygium wilfordii HOM05D005951 ORTHO05D007025 1.0e-96 357.1 236 74.2
HPP92_004361 Vanilla planifolia HOM05D005951 ORTHO05D007025 1.0e-96 357.1 223 77.1
Phvul.003G127300 Phaseolus vulgaris HOM05D005951 ORTHO05D007025 1.3e-96 356.7 232 74.6
Solyc07g042570.3 Solanum lycopersicum HOM05D005951 ORTHO05D007025 1.3e-96 356.7 226 75.2
SGA_v2.0_scaffold55G19875 Striga asiatica HOM05D005951 ORTHO05D007025 2.3e-96 355.9 237 75.9
Sopen07g022260 Solanum pennellii HOM05D005951 ORTHO05D007025 3.0e-96 355.5 226 74.8
PSO135G0575 Papaver somniferum HOM05D005951 ORTHO05D007025 3.9e-96 355.1 232 74.1
Lalb_Chr13g0299191 Lupinus albus HOM05D005951 ORTHO05D007025 5.1e-96 354.8 237 74.3
CANSAT56G0193 Cannabis sativa HOM05D005951 ORTHO05D007025 8.7e-96 354.0 227 74.9
Haze_26069 Corylus avellana HOM05D005951 ORTHO05D007025 1.1e-95 353.6 234 75.2
Glyma.13G114300 Glycine max HOM05D005951 ORTHO05D007025 1.1e-95 353.6 232 73.7
Medtr4g124640 Medicago truncatula HOM05D005951 ORTHO05D007025 1.1e-95 353.6 229 73.8
PSO724G0923 Papaver somniferum HOM05D005951 ORTHO05D007025 1.1e-95 353.6 232 73.3
CANSAT56G0116 Cannabis sativa HOM05D005951 ORTHO05D007025 1.9e-95 352.8 227 74.9
Ca_21339_v3 Cicer arietinum L. HOM05D000240 ORTHO05D002721 2.5e-95 352.4 236 72.0
EL10Ac8g18966 Beta vulgaris HOM05D005951 ORTHO05D007025 3.3e-95 352.1 232 73.3
DCAR_028530 Daucus carota HOM05D005951 ORTHO05D007025 3.3e-95 352.1 234 74.8
MBI13_g01673_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 5.7e-95 351.3 230 73.9
Lalb_Chr07g0181411 Lupinus albus HOM05D005951 ORTHO05D007025 7.4e-95 350.9 233 73.8
Oeu041808.1 Olea europaea HOM05D005951 ORTHO05D007025 1.6e-94 349.7 235 72.3
AUR62028321 Chenopodium quinoa HOM05D005951 ORTHO05D007025 1.8e-93 346.3 221 74.2
ECA234G1587 Erigeron canadensis HOM05D005951 ORTHO05D007025 1.8e-93 346.3 227 72.7
Migut.J00881 Erythranthe guttata HOM05D005951 ORTHO05D007025 3.1e-93 345.5 231 73.6
Os03g0182700 Oryza sativa ssp. japonica HOM05D005951 ORTHO05D007025 5.3e-93 344.7 227 72.7
TPR.G12577 Trifolium pratense HOM05D005951 ORTHO05D007025 6.9e-93 344.4 226 71.7
HanXRQChr10g0319821 Helianthus annuus HOM05D005951 ORTHO05D007025 2.6e-92 342.4 226 75.2
unitig_899.g15181 Utricularia gibba HOM05D005951 ORTHO05D007025 1.3e-91 340.1 229 73.4
Zm00001eb401690 Zea mays HOM05D005951 ORTHO05D007025 1.7e-91 339.7 227 72.7
CDE07G2051 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.2e-89 333.6 234 69.7
MELO3C015553.2 Cucumis melo HOM05D005951 ORTHO05D007025 6.7e-88 327.8 232 69.4
Oeu000276.3 Olea europaea HOM05D005951 ORTHO05D007025 6.7e-88 327.8 303 57.8
SEGI_21232 Sequoiadendron giganteum HOM05D005951 ORTHO05D007025 7.4e-87 324.3 233 66.5
BolC7t46402H Brassica oleracea HOM05D005951 ORTHO05D007025 1.2e-84 317.0 194 82.0
Lj7C692T6 Lonicera japonica HOM05D005951 ORTHO05D007025 1.5e-84 316.6 219 70.3
Nitab4.5_0003139g0080 Nicotiana tabacum HOM05D005951 ORTHO05D007025 5.9e-84 314.7 232 66.4
MBI19_g36230_MAGBIO Magnolia biondii HOM05D005951 ORTHO05D007025 7.7e-84 314.3 232 69.0
Pp3c21_14860 Physcomitrium patens HOM05D005951 ORTHO05D007025 7.7e-84 314.3 217 64.5
vmacro17078 Vaccinium macrocarpon HOM05D005951 ORTHO05D007025 7.7e-84 314.3 320 54.7
Mapoly0073s0056 Marchantia polymorpha HOM05D005951 ORTHO05D007025 3.8e-83 312.0 223 65.0
Pp3c18_14720 Physcomitrium patens HOM05D005951 ORTHO05D007025 8.5e-83 310.8 227 61.7
Hund26110 Selenicereus undatus HOM05D005951 ORTHO05D007025 1.1e-82 310.5 222 67.6
Actinidia30258 Actinidia chinensis HOM05D005951 ORTHO05D007025 1.4e-82 310.1 187 79.7
CDE06G1359 Ceratophyllum demersum HOM05D005951 ORTHO05D007025 1.3e-78 297.0 195 72.8
AUR62025338 Chenopodium quinoa HOM05D005951 ORTHO05D007025 2.2e-78 296.2 192 72.9
Zm00001eb401710 Zea mays HOM05D005951 ORTHO05D007025 6.3e-78 294.7 197 72.1
SMO239G0051 Selaginella moellendorffii HOM05D005951 ORTHO05D007025 7.0e-77 291.2 227 59.0
Rhsim05G0002100 Rhododendron simsii HOM05D005951 ORTHO05D007025 2.2e-75 286.2 235 63.8
Zm00001eb006150 Zea mays HOM05D005951 ORTHO05D007025 3.8e-67 258.8 167 73.1
Sc08g0009170 Simmondsia chinensis HOM05D005951 ORTHO05D007025 2.7e-65 252.7 156 80.1
Migut.L01596 Erythranthe guttata HOM05D005951 ORTHO05D007025 9.7e-63 244.2 225 59.6
AagrBONN_evm.TU.Sc2ySwM_117.912 Anthoceros agrestis HOM05D005951 ORTHO05D007025 1.4e-56 223.8 157 65.0
CARHR241300 Cardamine hirsuta HOM05D005951 ORTHO05D007025 5.7e-55 218.4 116 89.7
CBR_g16046 Chara braunii HOM05D005951 ORTHO05D007025 2.3e-51 206.5 218 48.6
SalBow6G6500 Salvia bowleyana HOM05D005951 ORTHO05D007025 8.3e-38 161.4 94 81.9
Cre12.g515650 Chlamydomonas reinhardtii HOM05D005951 ORTHO05D007025 3.3e-34 149.4 200 37.5
MD02G1101200 Malus domestica HOM05D005951 ORTHO05D007025 4.4e-31 139.0 97 74.2
PRCOL_00003879 Prasinoderma coloniale HOM05D005951 ORTHO05D007025 7.3e-26 121.7 206 34.0


User provided reference genes

Program Settings