Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00958 Brassica carinata HOM05D002941 ORTHO05D007802 8.0e-31 136.3 64 100.0
C03p86360 Brassica napus HOM05D002941 ORTHO05D007802 6.3e-28 126.7 59 100.0
BcaNung00480 Brassica carinata HOM05D002941 ORTHO05D007802 2.7e-26 121.3 57 98.2
A03p58970 Brassica napus HOM05D002941 ORTHO05D007802 2.7e-26 121.3 57 98.2
C07p56950 Brassica napus HOM05D002941 ORTHO05D007802 2.7e-26 121.3 56 100.0
C07p56990 Brassica napus HOM05D002941 ORTHO05D007802 2.7e-26 121.3 57 98.2
BolC7t46171H Brassica oleracea HOM05D002941 ORTHO05D007802 2.7e-26 121.3 56 100.0
BraA03t14957Z Brassica rapa HOM05D002941 ORTHO05D007802 2.7e-26 121.3 57 98.2
Sp7g27410 Schrenkiella parvula HOM05D002941 ORTHO05D007802 2.7e-26 121.3 57 98.2
Thhalv10025782m.g Eutrema salsugineum HOM05D002941 ORTHO05D007802 1.0e-25 119.4 56 96.4
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 3.8e-25 117.5 57 96.5
AT4G29590 Arabidopsis thaliana HOM05D002941 ORTHO05D007802 6.6e-25 116.7 55 98.2
Medtr6g092630 Medicago truncatula HOM05D002941 ORTHO05D007802 8.6e-25 116.3 56 91.1
MELO3C004620.2 Cucumis melo HOM05D002941 ORTHO05D007802 1.1e-24 115.9 56 91.1
Aa31LG2G20930 Aethionema arabicum HOM05D002941 ORTHO05D007802 1.5e-24 115.5 56 92.9
Carub.0007s1097 Capsella rubella HOM05D002941 ORTHO05D007802 1.5e-24 115.5 55 96.4
CARHR237420 Cardamine hirsuta HOM05D002941 ORTHO05D007802 2.5e-24 114.8 55 96.4
Nitab4.5_0010434g0020 Nicotiana tabacum HOM05D002941 ORTHO05D007802 2.5e-24 114.8 56 91.1
Cpa.g.sc885.1 Carica papaya HOM05D002941 ORTHO05D007802 3.3e-24 114.4 56 94.6
Cc06_g11270 Coffea canephora HOM05D002941 ORTHO05D007802 3.3e-24 114.4 56 91.1
Nitab4.5_0010222g0020 Nicotiana tabacum HOM05D002941 ORTHO05D007802 3.3e-24 114.4 56 89.3
QL02p062882 Quercus lobata HOM05D002941 ORTHO05D007802 3.3e-24 114.4 56 89.3
AL7G22790 Arabidopsis lyrata HOM05D002941 ORTHO05D007802 4.3e-24 114.0 55 94.5
CSS0033517 Camellia sinensis var. sinensis HOM05D002941 ORTHO05D007802 4.3e-24 114.0 56 91.1
CSS0046192 Camellia sinensis var. sinensis HOM05D002941 ORTHO05D007802 4.3e-24 114.0 56 91.1
ClCG11G001810 Citrullus lanatus HOM05D002941 ORTHO05D007802 4.3e-24 114.0 56 89.3
CsaV3_2G001520 Cucumis sativus L. HOM05D002941 ORTHO05D007802 4.3e-24 114.0 56 89.3
Dinv42310 Davidia involucrata HOM05D002941 ORTHO05D007802 4.3e-24 114.0 56 91.1
Cfa003102 Carpinus fangiana HOM05D002941 ORTHO05D007802 5.6e-24 113.6 56 92.9
Haze_25898 Corylus avellana HOM05D002941 ORTHO05D007802 5.6e-24 113.6 56 92.9
THA.LOC104803985 Tarenaya hassleriana HOM05D002941 ORTHO05D007802 5.6e-24 113.6 56 91.1
TWI34G1831 Tripterygium wilfordii HOM05D002941 ORTHO05D007802 5.6e-24 113.6 56 89.3
TAR626G1518 Trochodendron aralioides HOM05D002941 ORTHO05D007802 5.6e-24 113.6 56 92.9
GSVIVG01015217001 Vitis vinifera HOM05D002941 ORTHO05D007802 5.6e-24 113.6 56 92.9
Hma1.2p1_0798F.1_g219710 Hydrangea macrophylla HOM05D002941 ORTHO05D007802 7.3e-24 113.2 56 91.1
Prupe.7G211700 Prunus persica HOM05D002941 ORTHO05D007802 7.3e-24 113.2 56 91.1
Aqoxy7G01242 Aquilegia oxysepala HOM05D002941 ORTHO05D007802 9.5e-24 112.8 56 91.1
Lj2g0002582 Lotus japonicus HOM05D002941 ORTHO05D007802 9.5e-24 112.8 56 89.3
Ca_25620_v3 Cicer arietinum L. HOM05D002941 ORTHO05D007802 1.2e-23 112.5 56 89.3
FAN23G2602 Fragaria x ananassa HOM05D002941 ORTHO05D007802 1.2e-23 112.5 56 91.1
Sed0001210 Sechium edule HOM05D002941 ORTHO05D007802 1.2e-23 112.5 56 87.5
PGSC0003DMG400003266 Solanum tuberosum HOM05D002941 ORTHO05D007802 1.2e-23 112.5 56 87.5
TPR.G35490 Trifolium pratense HOM05D002941 ORTHO05D007802 1.2e-23 112.5 56 87.5
VMungo0464G0681 Vigna mungo HOM05D002941 ORTHO05D007802 1.2e-23 112.5 56 87.5
Ah.01g022630 Amaranthus hybridus HOM05D000128 ORTHO05D000059 1.6e-23 112.1 56 89.3
Gohir.D06G070400 Gossypium hirsutum HOM05D002941 ORTHO05D007802 1.6e-23 112.1 56 91.1
Gorai.010G082100 Gossypium raimondii HOM05D002941 ORTHO05D007802 1.6e-23 112.1 56 91.1
Psat1g050240 Pisum sativum HOM05D002941 ORTHO05D007802 1.6e-23 112.1 56 87.5
Rhsim05G0022400 Rhododendron simsii HOM05D002941 ORTHO05D007802 1.6e-23 112.1 56 87.5
SGA_v2.0_scaffold10G05226 Striga asiatica HOM05D002941 ORTHO05D007802 1.6e-23 112.1 56 87.5
Thecc.09G091200 Theobroma cacao HOM05D002941 ORTHO05D007802 2.1e-23 111.7 56 87.5
arahy.Tifrunner.gnm1.ann1.DY3U4J Arachis hypogaea HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 87.5
arahy.Tifrunner.gnm1.ann1.W9L9K2 Arachis hypogaea HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 87.5
Glyma.01G002902 Glycine max HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 89.3
Glyma.07G129200 Glycine max HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 89.3
Lalb_Chr24g0393791 Lupinus albus HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 87.5
Manes.03G032700 Manihot esculenta HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 87.5
Peaxi162Scf00221g01113 Petunia axillaris HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 87.5
Pp3c3_17950 Physcomitrium patens HOM05D002941 ORTHO05D007802 2.8e-23 111.3 56 85.7
FAN26G2201 Fragaria x ananassa HOM05D002941 ORTHO05D007802 3.6e-23 110.9 56 89.3
FAN26G2531 Fragaria x ananassa HOM05D002941 ORTHO05D007802 3.6e-23 110.9 56 89.3
FAN28G1853 Fragaria x ananassa HOM05D002941 ORTHO05D007802 3.6e-23 110.9 56 89.3
MD15G1205400 Malus domestica HOM05D002941 ORTHO05D007802 3.6e-23 110.9 56 89.3
COL.COLO4_18214 Corchorus olitorius HOM05D002941 ORTHO05D007802 4.7e-23 110.5 56 87.5
Duzib187G0758 Durio zibethinus HOM05D002941 ORTHO05D007802 4.7e-23 110.5 56 87.5
RcHm_v2.0_Chr2g0093121 Rosa chinensis HOM05D002941 ORTHO05D007802 4.7e-23 110.5 56 89.3
vmacro17223 Vaccinium macrocarpon HOM05D002941 ORTHO05D007802 4.7e-23 110.5 56 85.7
Migut.J00598 Erythranthe guttata HOM05D002941 ORTHO05D007802 6.1e-23 110.2 56 83.9
MBI01_g01251_MAGBIO Magnolia biondii HOM05D002941 ORTHO05D007802 6.1e-23 110.2 56 85.7
Sabra06G0119200 Salix brachista HOM05D002941 ORTHO05D007802 6.1e-23 110.2 56 87.5
Actinidia39722 Actinidia chinensis HOM05D002941 ORTHO05D007802 8.0e-23 109.8 56 87.5
MSTRG.19522 Avicennia marina HOM05D002941 ORTHO05D007802 8.0e-23 109.8 56 85.7
Potri.006G150500 Populus trichocarpa HOM05D002941 ORTHO05D007802 8.0e-23 109.8 56 85.7
DCAR_024684 Daucus carota HOM05D002941 ORTHO05D007802 1.0e-22 109.4 56 85.7
ECA236G2030 Erigeron canadensis HOM05D002941 ORTHO05D007802 1.0e-22 109.4 56 85.7
FAN19G2976 Fragaria x ananassa HOM05D002941 ORTHO05D007802 1.0e-22 109.4 56 87.5
CAN.G52.1 Capsicum annuum HOM05D002941 ORTHO05D007802 1.4e-22 109.0 56 83.9
AUR62010087 Chenopodium quinoa HOM05D000128 ORTHO05D000059 1.4e-22 109.0 56 85.7
AUR62013083 Chenopodium quinoa HOM05D000128 ORTHO05D000059 1.4e-22 109.0 56 85.7
HanXRQChr04g0126271 Helianthus annuus HOM05D002941 ORTHO05D007802 1.4e-22 109.0 56 83.9
Lsat_1_v5_gn_8_87601 Lactuca sativa HOM05D002941 ORTHO05D007802 1.4e-22 109.0 56 83.9
PSO832G3360 Papaver somniferum HOM05D002941 ORTHO05D007802 1.4e-22 109.0 56 87.5
Solyc07g025520.3 Solanum lycopersicum HOM05D002941 ORTHO05D007802 1.4e-22 109.0 56 85.7
Sopen07g013800 Solanum pennellii HOM05D002941 ORTHO05D007802 1.4e-22 109.0 56 85.7
Mapoly0119s0034 Marchantia polymorpha HOM05D002941 ORTHO05D007802 1.8e-22 108.6 56 87.5
CiPaw.04G151200 Carya illinoinensis HOM05D002941 ORTHO05D007802 2.3e-22 108.2 56 87.5
Ciclev10008994m.g Citrus clementina HOM05D002941 ORTHO05D007802 2.3e-22 108.2 56 83.9
SalBow6G6088 Salvia bowleyana HOM05D002941 ORTHO05D007802 2.3e-22 108.2 56 83.9
Eucgr.C00903 Eucalyptus grandis HOM05D002941 ORTHO05D007802 3.0e-22 107.8 56 85.7
Nn6g35443 Nelumbo nucifera HOM05D002941 ORTHO05D007802 3.0e-22 107.8 56 87.5
SMO141G0088 Selaginella moellendorffii HOM05D002941 ORTHO05D007802 4.0e-22 107.5 56 80.4
Zm00001eb361350 Zea mays HOM05D002941 ORTHO05D007802 4.0e-22 107.5 56 85.7
Oeu034044.1 Olea europaea HOM05D002941 ORTHO05D007802 5.2e-22 107.1 55 83.6
Hund00041 Selenicereus undatus HOM05D002941 ORTHO05D007802 5.2e-22 107.1 56 83.9
Atru.BG.1.p Acer truncatum HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 85.7
ATR0987G003 Amborella trichopoda HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 82.1
EL10Ac9g21433 Beta vulgaris HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 82.1
PSO063G2718 Papaver somniferum HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 85.7
Phvul.004G171000 Phaseolus vulgaris HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 85.7
PGR142G3357 Punica granatum HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 80.4
HPP92_009131 Vanilla planifolia HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 85.7
HPP92_009134 Vanilla planifolia HOM05D002941 ORTHO05D007802 6.8e-22 106.7 56 85.7
AagrBONN_evm.TU.Sc2ySwM_228.3900 Anthoceros agrestis HOM05D002941 ORTHO05D007802 1.2e-21 105.9 56 82.1
Lj4C308T6 Lonicera japonica HOM05D002941 ORTHO05D007802 1.2e-21 105.9 56 82.1
Os01g0712600 Oryza sativa ssp. japonica HOM05D002941 ORTHO05D007802 4.4e-21 104.0 56 83.9
unitig_27.g24729 Utricularia gibba HOM05D002941 ORTHO05D007802 4.4e-21 104.0 56 78.6
MCO03G392 Micromonas commoda HOM05D002941 ORTHO05D007802 1.4e-19 99.0 56 75.0
Actinidia29795 Actinidia chinensis HOM05D002941 ORTHO05D007802 7.8e-18 93.2 60 73.3
Cre06.g278236 Chlamydomonas reinhardtii HOM05D002941 ORTHO05D007802 3.9e-17 90.9 60 70.0
PRCOL_00001733 Prasinoderma coloniale HOM05D002941 ORTHO05D007802 7.5e-13 76.6 50 68.0
Lj1g0010940 Lotus japonicus HOM05D000499 ORTHO05D002036 1.9e-11 72.0 35 88.6
PRCOL_00006451 Prasinoderma coloniale HOM05D002941 ORTHO05D007802 1.6e-10 68.9 53 58.5
PRCOL_00004756 Prasinoderma coloniale HOM05D002941 ORTHO05D009287 7.3e-08 60.1 56 48.2
Actinidia26715 Actinidia chinensis HOM05D002941 ORTHO05D007802 3.6e-07 57.8 31 87.1
MD02G1076700 Malus domestica HOM05D002941 ORTHO05D007802 3.6e-07 57.8 55 56.4
SEGI_05425 Sequoiadendron giganteum HOM05D002941 ORTHO05D009287 2.3e-06 55.1 54 48.1
Cre12.g547100 Chlamydomonas reinhardtii HOM05D002941 ORTHO05D009287 3.1e-06 54.7 54 44.4
Nn8g38897 Nelumbo nucifera HOM05D002941 ORTHO05D007802 3.1e-06 54.7 56 53.6
MCO12G305 Micromonas commoda HOM05D002941 ORTHO05D009287 4.0e-06 54.3 54 46.3
HPP92_020228 Vanilla planifolia HOM05D002941 ORTHO05D009287 4.0e-06 54.3 54 46.3
Carub.0003s0040 Capsella rubella HOM05D002941 ORTHO05D009287 8.9e-06 53.1 54 42.6
SMO367G0379 Selaginella moellendorffii HOM05D002941 ORTHO05D009287 8.9e-06 53.1 54 40.7


User provided reference genes

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