Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 0.0e+00 1174.5 585 100.0
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 0.0e+00 1172.1 585 99.8
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1167.1 585 99.3
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1130.5 588 96.8
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 0.0e+00 1126.3 588 96.3
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 0.0e+00 1110.1 588 94.6
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 0.0e+00 1101.7 588 92.3
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 0.0e+00 1097.0 588 92.3
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 0.0e+00 1096.6 588 91.8
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 0.0e+00 1090.9 588 91.8
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 0.0e+00 1090.1 588 91.2
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1078.9 589 91.7
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 0.0e+00 1078.5 589 91.0
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 0.0e+00 1077.0 589 91.0
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 2.7e-303 1044.6 589 88.1
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 3.7e-300 1034.2 589 87.4
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 2.0e-298 1028.5 589 87.4
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 3.2e-275 951.4 586 79.5
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 3.2e-275 951.4 586 79.7
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 3.2e-275 951.4 587 79.0
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 4.6e-274 947.6 586 79.4
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 1.3e-273 946.0 554 82.1
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 6.6e-273 943.7 586 79.4
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 8.6e-273 943.3 586 78.8
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 8.6e-273 943.3 586 79.2
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 1.5e-272 942.6 587 79.7
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 4.7e-271 937.6 585 78.6
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 1.8e-270 935.6 552 81.2
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 2.0e-269 932.2 587 78.0
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 2.6e-269 931.8 585 77.9
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.7e-268 927.9 585 77.8
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 4.9e-268 927.5 548 81.2
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 1.1e-267 926.4 547 80.8
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.4e-267 926.0 585 77.8
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 2.4e-267 925.2 585 76.9
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 2.4e-267 925.2 586 77.1
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 2.4e-267 925.2 584 77.6
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 5.4e-267 924.1 546 80.6
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 5.4e-267 924.1 585 77.3
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 6.0e-266 920.6 586 76.8
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 1.0e-265 919.8 555 79.8
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 1.7e-265 919.1 547 79.7
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 3.9e-265 917.9 547 81.0
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 5.1e-265 917.5 546 81.1
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.6e-263 912.5 468 95.3
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 2.1e-263 912.1 547 80.3
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 3.6e-263 911.4 620 73.1
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 4.7e-263 911.0 586 76.5
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.1e-262 909.8 585 76.9
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 1.8e-262 909.1 586 75.6
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 5.2e-262 907.5 547 79.7
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 6.8e-262 907.1 547 79.7
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 8.9e-262 906.7 548 78.5
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 4.4e-261 904.4 585 75.6
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 1.3e-260 902.9 548 78.8
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 2.9e-260 901.7 526 82.1
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 2.9e-260 901.7 548 78.6
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 1.4e-259 899.4 522 82.6
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 4.1e-259 897.9 546 79.7
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 4.1e-259 897.9 522 82.4
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 7.1e-259 897.1 548 78.1
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 9.2e-259 896.7 586 75.4
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 2.1e-258 895.6 544 79.0
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 2.7e-258 895.2 573 76.1
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 4.6e-258 894.4 566 77.6
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 6.0e-258 894.0 587 75.8
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 6.0e-258 894.0 525 81.3
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 1.3e-257 892.9 522 81.0
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.7e-257 892.5 585 73.0
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 1.7e-257 892.5 586 75.6
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 2.3e-257 892.1 521 81.0
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 1.5e-256 889.4 551 77.3
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 3.3e-256 888.3 585 73.0
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 5.6e-256 887.5 585 75.0
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 5.6e-256 887.5 586 75.6
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 2.1e-255 885.6 541 78.6
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 2.4e-254 882.1 539 78.5
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 9.9e-253 876.7 602 71.1
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.3e-252 876.3 508 83.1
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 1.7e-252 875.9 546 76.6
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 3.2e-251 871.7 688 65.4
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 7.1e-251 870.5 521 80.6
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 2.7e-250 868.6 535 78.1
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 3.0e-249 865.1 579 73.4
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.9e-248 862.4 542 76.2
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 3.3e-248 861.7 542 76.0
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 7.3e-248 860.5 540 76.7
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 4.8e-247 857.8 598 71.4
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 2.4e-246 855.5 522 79.1
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 5.8e-245 850.9 546 75.8
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.3e-244 849.7 544 74.6
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 1.4e-243 846.3 521 77.9
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 2.8e-239 832.0 580 71.9
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 4.0e-238 828.2 541 73.9
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 3.8e-236 821.6 555 73.2
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 9.3e-235 817.0 498 80.1
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 1.3e-231 806.6 540 71.7
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 1.1e-230 803.5 506 78.3
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 6.9e-230 800.8 540 71.1
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.4e-229 798.5 521 75.8
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 9.3e-227 790.4 468 81.0
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 2.7e-226 788.9 469 80.6
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 5.7e-224 781.2 549 68.5
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 2.1e-218 762.7 439 83.1
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 4.6e-218 761.5 443 83.3
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 3.0e-217 758.8 544 69.5
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 2.0e-213 746.1 468 77.6
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.8e-201 706.4 540 64.3
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 2.6e-192 676.0 546 60.1
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 3.6e-186 655.6 464 69.0
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 1.2e-173 614.0 552 55.8
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 4.5e-173 612.1 585 56.8
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 4.4e-168 595.5 534 56.9
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 4.0e-153 545.8 459 58.4
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 1.2e-149 534.3 516 53.9
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 9.6e-139 498.0 332 72.9
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 6.4e-127 458.8 259 83.8
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 2.6e-88 330.5 254 63.4
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 1.4e-76 291.6 158 85.4
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 1.4e-57 228.4 490 31.0
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 5.8e-43 179.9 122 75.4
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 8.1e-37 159.5 208 45.7
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 7.8e-32 142.9 90 76.7
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.4e-25 122.1 538 23.0
QL11p035449 Quercus lobata HOM05D006107 ORTHO05D007455 4.0e-20 104.0 65 69.2
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 4.2e-17 94.0 74 62.2
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 3.9e-07 60.8 378 23.0
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 1.1e-06 59.3 30 86.7
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 9.6e-06 56.2 385 22.9


User provided reference genes

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