Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00931 Brassica carinata HOM05D007010 ORTHO05D008591 7.5e-67 257.3 154 100.0
C03p86090 Brassica napus HOM05D007010 ORTHO05D008591 7.5e-67 257.3 154 100.0
BolC3t20897H Brassica oleracea HOM05D007010 ORTHO05D008591 7.5e-67 257.3 154 100.0
A08p17130 Brassica napus HOM05D007010 ORTHO05D008591 1.4e-57 226.5 160 88.8
BcaB03g11855 Brassica carinata HOM05D007010 ORTHO05D008591 4.1e-49 198.4 161 80.7
BraA08t33674Z Brassica rapa HOM05D007010 ORTHO05D008591 3.9e-47 191.8 160 78.8
Sp7g31830 Schrenkiella parvula HOM05D007010 ORTHO05D008591 4.9e-34 148.3 160 56.2
Thhalv10027214m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 3.3e-30 135.6 153 53.6
Sp6g31840 Schrenkiella parvula HOM05D007010 ORTHO05D008591 3.1e-28 129.0 160 50.0
Thhalv10014970m.g Eutrema salsugineum HOM05D007010 ORTHO05D008591 3.4e-27 125.6 158 62.0
Aa31LG3G15440 Aethionema arabicum HOM05D007010 ORTHO05D008591 1.6e-24 116.7 161 50.3
THA.LOC104811249 Tarenaya hassleriana HOM05D007010 ORTHO05D008591 3.8e-18 95.5 154 40.9
Aa31LG8G6820 Aethionema arabicum HOM05D007010 ORTHO05D008591 1.6e-16 90.1 158 49.4
Ciclev10009901m.g Citrus clementina HOM05D007010 ORTHO05D008591 3.5e-16 89.0 149 38.3
Migut.L00284 Erythranthe guttata HOM05D007010 ORTHO05D008591 5.1e-15 85.1 154 39.6
CARHR201450 Cardamine hirsuta HOM05D007010 ORTHO05D008591 8.7e-15 84.3 161 44.1
Atru.chr1.3280 Acer truncatum HOM05D007010 ORTHO05D008591 2.5e-14 82.8 72 56.9
Haze_03853 Corylus avellana HOM05D007010 ORTHO05D008591 2.5e-14 82.8 119 39.5
Gohir.A06G087901 Gossypium hirsutum HOM05D007010 ORTHO05D008591 2.5e-14 82.8 152 34.9
Thecc.09G051700 Theobroma cacao HOM05D007010 ORTHO05D008591 3.3e-14 82.4 160 35.6
Eucgr.C02362 Eucalyptus grandis HOM05D007010 ORTHO05D008591 4.3e-14 82.0 148 35.1
Psat7g115760 Pisum sativum HOM05D007010 ORTHO05D008591 1.3e-13 80.5 151 35.1
RcHm_v2.0_Chr6g0310541 Rosa chinensis HOM05D007010 ORTHO05D008591 3.6e-13 79.0 49 67.3
Gohir.D06G088700 Gossypium hirsutum HOM05D007010 ORTHO05D008591 4.8e-13 78.6 154 35.1
TWI63G1421 Tripterygium wilfordii HOM05D007010 ORTHO05D008591 4.8e-13 78.6 150 34.7
QL05p000846 Quercus lobata HOM05D007010 ORTHO05D008591 8.1e-13 77.8 118 37.3
Sopen12g031840 Solanum pennellii HOM05D007010 ORTHO05D008591 1.4e-12 77.0 158 36.1
Glyma.07G198700 Glycine max HOM05D007010 ORTHO05D008591 1.8e-12 76.6 154 33.8
Lj5g0011556 Lotus japonicus HOM05D007010 ORTHO05D008591 1.8e-12 76.6 151 36.4
QL05p001142 Quercus lobata HOM05D007010 ORTHO05D008591 1.8e-12 76.6 118 39.0
Solyc12g095940.1 Solanum lycopersicum HOM05D007010 ORTHO05D008591 1.8e-12 76.6 158 36.1
Glyma.13G177700 Glycine max HOM05D007010 ORTHO05D008591 2.4e-12 76.3 56 64.3
MD15G1061800 Malus domestica HOM05D007010 ORTHO05D008591 2.4e-12 76.3 135 48.1
Oeu018653.1 Olea europaea HOM05D007010 ORTHO05D008591 2.4e-12 76.3 149 33.6
SGA_v2.0_scaffold52G19071 Striga asiatica HOM05D007010 ORTHO05D008591 2.4e-12 76.3 153 35.9
AL6G22510 Arabidopsis lyrata HOM05D007010 ORTHO05D008591 3.1e-12 75.9 177 33.9
Lj7P280T30 Lonicera japonica HOM05D007010 ORTHO05D008591 3.1e-12 75.9 156 37.2
MD08G1044600 Malus domestica HOM05D007010 ORTHO05D008591 3.1e-12 75.9 62 56.5
Nn8g38932 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.1e-12 75.9 154 36.4
Nn8g38936 Nelumbo nucifera HOM05D007010 ORTHO05D008591 3.1e-12 75.9 154 36.4
Oeu037327.1 Olea europaea HOM05D007010 ORTHO05D008591 4.0e-12 75.5 154 37.0
Cfa017938 Carpinus fangiana HOM05D007010 ORTHO05D008591 5.3e-12 75.1 52 65.4
Cpa.g.sc7.196 Carica papaya HOM05D007010 ORTHO05D008591 6.9e-12 74.7 138 49.3
Duzib168G1521 Durio zibethinus HOM05D007010 ORTHO05D008591 6.9e-12 74.7 48 66.7
FAN27G2071 Fragaria x ananassa HOM05D007010 ORTHO05D008591 6.9e-12 74.7 56 58.9
AT5G11760 Arabidopsis thaliana HOM05D007010 ORTHO05D008591 1.2e-11 73.9 183 38.3
Ca_18571_v3 Cicer arietinum L. HOM05D007010 ORTHO05D008591 1.2e-11 73.9 125 36.8
Prupe.1G414500 Prunus persica HOM05D007010 ORTHO05D008591 1.5e-11 73.6 62 53.2
FvH4_2g32140 Fragaria vesca HOM05D007010 ORTHO05D008591 2.0e-11 73.2 161 42.2
Medtr4g088585 Medicago truncatula HOM05D007010 ORTHO05D008591 2.0e-11 73.2 156 34.6
Potri.018G056000 Populus trichocarpa HOM05D007010 ORTHO05D008591 2.0e-11 73.2 148 35.8
FAN24G3148 Fragaria x ananassa HOM05D007010 ORTHO05D008591 2.6e-11 72.8 161 42.2
Potri.006G232200 Populus trichocarpa HOM05D007010 ORTHO05D008591 2.6e-11 72.8 125 35.2
SalBow2G0398 Salvia bowleyana HOM05D007010 ORTHO05D008591 2.6e-11 72.8 126 36.5
SalBow2G1284 Salvia bowleyana HOM05D007010 ORTHO05D008591 2.6e-11 72.8 126 36.5
PGSC0003DMG400029388 Solanum tuberosum HOM05D007010 ORTHO05D008591 2.6e-11 72.8 157 34.4
Lalb_Chr05g0218511 Lupinus albus HOM05D007010 ORTHO05D008591 3.4e-11 72.4 154 32.5
CAN.G208.75 Capsicum annuum HOM05D007010 ORTHO05D008591 4.5e-11 72.0 130 36.2
FAN10G4050 Fragaria x ananassa HOM05D007010 ORTHO05D008591 4.5e-11 72.0 42 71.4
Manes.03G046700 Manihot esculenta HOM05D007010 ORTHO05D008591 4.5e-11 72.0 38 76.3
Hund03353 Selenicereus undatus HOM05D007010 ORTHO05D008591 5.8e-11 71.6 154 35.1
TAR383G0702 Trochodendron aralioides HOM05D007010 ORTHO05D008591 7.6e-11 71.2 157 37.6
CANSAT56G1710 Cannabis sativa HOM05D007010 ORTHO05D008591 9.9e-11 70.9 156 35.3
Phvul.002G230000 Phaseolus vulgaris HOM05D007010 ORTHO05D008591 1.3e-10 70.5 155 32.9
Aqoxy3G02885 Aquilegia oxysepala HOM05D007010 ORTHO05D008591 1.7e-10 70.1 39 71.8
CsaV3_4G035530 Cucumis sativus L. HOM05D007010 ORTHO05D008591 2.2e-10 69.7 119 35.3
SalBow7G3522 Salvia bowleyana HOM05D007010 ORTHO05D008591 2.2e-10 69.7 129 38.0
Sed0004842 Sechium edule HOM05D007010 ORTHO05D008591 2.9e-10 69.3 71 49.3
ECA240G3686 Erigeron canadensis HOM05D007010 ORTHO05D008591 4.9e-10 68.6 151 33.1
TAR497G0007 Trochodendron aralioides HOM05D007010 ORTHO05D008591 6.4e-10 68.2 157 35.0
Zm00001eb054150 Zea mays HOM05D007010 ORTHO05D008591 6.4e-10 68.2 39 66.7
Hma1.2p1_0450F.1_g155640 Hydrangea macrophylla HOM05D007010 ORTHO05D008591 1.1e-09 67.4 162 34.0
Lsat_1_v5_gn_9_89520 Lactuca sativa HOM05D007010 ORTHO05D008591 1.1e-09 67.4 152 31.6
VMungo0251G3434 Vigna mungo HOM05D007010 ORTHO05D008591 1.1e-09 67.4 155 34.8
TPR.G16317 Trifolium pratense HOM05D007010 ORTHO05D008591 1.4e-09 67.0 158 31.6
Nn8g38933 Nelumbo nucifera HOM05D007010 ORTHO05D008591 1.9e-09 66.6 149 34.9
Pp3c2_14930 Physcomitrium patens HOM05D007010 ORTHO05D008591 1.9e-09 66.6 123 35.8
Sc09g0009690 Simmondsia chinensis HOM05D007010 ORTHO05D008591 2.4e-09 66.2 156 34.0
AUR62009172 Chenopodium quinoa HOM05D007010 ORTHO05D008591 3.2e-09 65.9 56 51.8
HanXRQChr13g0410661 Helianthus annuus HOM05D007010 ORTHO05D008591 5.5e-09 65.1 155 45.2
PGR044G1826 Punica granatum HOM05D007010 ORTHO05D008591 5.5e-09 65.1 35 71.4
CBR_g70706 Chara braunii HOM05D007010 ORTHO05D008591 9.3e-09 64.3 38 68.4
FAN20G1932 Fragaria x ananassa HOM05D007010 ORTHO05D008591 9.3e-09 64.3 44 61.4
PSO478G3947 Papaver somniferum HOM05D007010 ORTHO05D008591 2.7e-08 62.8 62 45.2
Carub.0006s1029 Capsella rubella HOM05D007010 ORTHO05D008591 3.5e-08 62.4 187 29.9
Mapoly0094s0032 Marchantia polymorpha HOM05D007010 ORTHO05D008591 3.5e-08 62.4 38 63.2
Atru.chr7.2115 Acer truncatum HOM05D007010 ORTHO05D008591 4.6e-08 62.0 155 34.2
Lj4g0022512 Lotus japonicus HOM05D007010 ORTHO05D008591 4.6e-08 62.0 155 33.5
SEGI_19332 Sequoiadendron giganteum HOM05D007010 ORTHO05D008591 4.6e-08 62.0 38 60.5
MBI06_g20720_MAGBIO Magnolia biondii HOM05D007010 ORTHO05D008591 7.9e-08 61.2 44 54.5
ATR0697G019 Amborella trichopoda HOM05D007010 ORTHO05D008591 3.0e-07 59.3 154 38.3
Cre09.g395325 Chlamydomonas reinhardtii HOM05D007010 ORTHO05D008591 3.0e-07 59.3 69 46.4
Dinv27969 Davidia involucrata HOM05D007010 ORTHO05D008591 5.1e-07 58.5 144 36.1
ClCG05G017750 Citrullus lanatus HOM05D007010 ORTHO05D008591 1.5e-06 57.0 123 32.5


User provided reference genes

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