Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00909 Brassica carinata HOM05D007147 ORTHO05D024486 2.8e-31 137.9 66 100.0
C03p85840 Brassica napus HOM05D007147 ORTHO05D024486 9.8e-24 112.8 57 94.7
BolC3t20875H Brassica oleracea HOM05D007147 ORTHO05D024486 4.8e-23 110.5 57 93.0
BcaNung05032 Brassica carinata HOM05D007147 ORTHO05D009166 2.0e-13 78.6 42 81.0
C01p04440 Brassica napus HOM05D007147 ORTHO05D009166 2.0e-13 78.6 42 81.0
BolC1t00429H Brassica oleracea HOM05D007147 ORTHO05D009166 2.0e-13 78.6 42 81.0
BraA01t00396Z Brassica rapa HOM05D007147 ORTHO05D009166 2.0e-13 78.6 42 81.0
Thhalv10026003m.g Eutrema salsugineum HOM05D007147 ORTHO05D009166 2.0e-13 78.6 42 81.0
AL7G16910 Arabidopsis lyrata HOM05D007147 ORTHO05D009166 2.7e-13 78.2 42 81.0
AT4G34360 Arabidopsis thaliana HOM05D007147 ORTHO05D009166 2.7e-13 78.2 42 81.0
CARHR242410 Cardamine hirsuta HOM05D007147 ORTHO05D009166 2.7e-13 78.2 42 81.0
Sp7g32150 Schrenkiella parvula HOM05D007147 ORTHO05D009166 5.9e-13 77.0 42 78.6
Carub.0007s0597 Capsella rubella HOM05D007147 ORTHO05D009166 1.0e-12 76.3 42 78.6
Aa31LG2G16250 Aethionema arabicum HOM05D007147 ORTHO05D009166 2.9e-12 74.7 42 78.6
THA.LOC104804359 Tarenaya hassleriana HOM05D007147 ORTHO05D009166 1.9e-11 72.0 42 76.2
CiPaw.05G060500 Carya illinoinensis HOM05D007147 ORTHO05D009166 7.3e-11 70.1 42 73.8
Thecc.02G121100 Theobroma cacao HOM05D007147 ORTHO05D009166 7.3e-11 70.1 42 71.4
GSVIVG01031905001 Vitis vinifera HOM05D007147 ORTHO05D009166 7.3e-11 70.1 42 76.2
ECA236G2314 Erigeron canadensis HOM05D007147 ORTHO05D009166 9.5e-11 69.7 44 70.5
Nn1g05127 Nelumbo nucifera HOM05D007147 ORTHO05D009166 9.5e-11 69.7 42 71.4
Dinv42097 Davidia involucrata HOM05D007147 ORTHO05D009166 1.6e-10 68.9 42 71.4
HanXRQChr15g0490561 Helianthus annuus HOM05D007147 ORTHO05D009166 2.8e-10 68.2 44 68.2
Lj9A365G69 Lonicera japonica HOM05D007147 ORTHO05D009166 2.8e-10 68.2 42 69.0
Duzib132G1016 Durio zibethinus HOM05D007147 ORTHO05D009166 3.6e-10 67.8 42 66.7
Atru.chr5.2922 Acer truncatum HOM05D007147 ORTHO05D009166 6.1e-10 67.0 38 76.3
AUR62011017 Chenopodium quinoa HOM05D007147 ORTHO05D009166 6.1e-10 67.0 42 64.3
QL11p040099 Quercus lobata HOM05D007147 ORTHO05D009166 6.1e-10 67.0 42 69.0
Rhsim11G0172700 Rhododendron simsii HOM05D007147 ORTHO05D009166 6.1e-10 67.0 42 69.0
Hund00292 Selenicereus undatus HOM05D007147 ORTHO05D009166 6.1e-10 67.0 37 75.7
Hund00299 Selenicereus undatus HOM05D007147 ORTHO05D009166 6.1e-10 67.0 37 75.7
Ciclev10029097m.g Citrus clementina HOM05D007147 ORTHO05D009166 8.0e-10 66.6 42 66.7
SalBow6G2891 Salvia bowleyana HOM05D007147 ORTHO05D009166 8.0e-10 66.6 42 69.0
CSS0004376 Camellia sinensis var. sinensis HOM05D007147 ORTHO05D009166 1.0e-09 66.2 42 69.0
Ca_20840_v3 Cicer arietinum L. HOM05D007147 ORTHO05D009166 1.0e-09 66.2 44 65.9
Medtr4g068950 Medicago truncatula HOM05D007147 ORTHO05D009166 1.0e-09 66.2 44 65.9
DCAR_022090 Daucus carota HOM05D005785 ORTHO05D009166 1.8e-09 65.5 42 69.0
FvH4_2g07850 Fragaria vesca HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 71.1
FAN15G2211 Fragaria x ananassa HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 71.1
FAN24G1629 Fragaria x ananassa HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 71.1
FAN27G2577 Fragaria x ananassa HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 71.1
Potri.004G150200 Populus trichocarpa HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 73.7
Prupe.8G106400 Prunus persica HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 71.1
Sabra04G0100000 Salix brachista HOM05D007147 ORTHO05D009166 1.8e-09 65.5 38 73.7
ClCG02G005360 Citrullus lanatus HOM05D005785 ORTHO05D009166 2.3e-09 65.1 42 66.7
MELO3C018408.2 Cucumis melo HOM05D007147 ORTHO05D009166 2.3e-09 65.1 42 64.3
RcHm_v2.0_Chr6g0262271 Rosa chinensis HOM05D007147 ORTHO05D009166 2.3e-09 65.1 38 68.4
Manes.15G147500 Manihot esculenta HOM05D007147 ORTHO05D009166 3.1e-09 64.7 38 73.7
Psat7g185440 Pisum sativum HOM05D007147 ORTHO05D009166 3.1e-09 64.7 44 65.9
BraA08t33654Z Brassica rapa HOM05D007147 ORTHO05D024486 4.0e-09 64.3 51 62.7
Haze_02425 Corylus avellana HOM05D007147 ORTHO05D009166 4.0e-09 64.3 38 71.1
Eucgr.I01240 Eucalyptus grandis HOM05D007147 ORTHO05D009166 5.2e-09 63.9 37 73.0
Actinidia00494 Actinidia chinensis HOM05D007147 ORTHO05D009166 6.8e-09 63.5 42 69.0
arahy.Tifrunner.gnm1.ann1.ZC4AM7 Arachis hypogaea HOM05D007147 ORTHO05D009166 6.8e-09 63.5 42 66.7
A08p16900 Brassica napus HOM05D007147 ORTHO05D024486 6.8e-09 63.5 30 93.3
MD10G1083300 Malus domestica HOM05D007147 ORTHO05D009166 6.8e-09 63.5 38 68.4
AUR62016685 Chenopodium quinoa HOM05D007147 ORTHO05D009166 8.9e-09 63.2 42 61.9
CsaV3_7G010260 Cucumis sativus L. HOM05D007147 ORTHO05D009166 8.9e-09 63.2 41 65.9
Gohir.A04G117800 Gossypium hirsutum HOM05D007147 ORTHO05D009166 8.9e-09 63.2 42 61.9
Gohir.D04G159500 Gossypium hirsutum HOM05D007147 ORTHO05D009166 8.9e-09 63.2 42 61.9
Gorai.012G146900 Gossypium raimondii HOM05D007147 ORTHO05D009166 8.9e-09 63.2 42 61.9
Lsat_1_v5_gn_7_89880 Lactuca sativa HOM05D007147 ORTHO05D009166 8.9e-09 63.2 44 65.9
SEGI_35081 Sequoiadendron giganteum HOM05D007147 ORTHO05D009166 1.2e-08 62.8 72 44.4
Lalb_Chr01g0002781 Lupinus albus HOM05D007147 ORTHO05D009166 1.5e-08 62.4 44 63.6
Oeu021890.1 Olea europaea HOM05D007147 ORTHO05D009166 1.5e-08 62.4 42 64.3
TAR381G1422 Trochodendron aralioides HOM05D007147 ORTHO05D009166 1.5e-08 62.4 37 70.3
Cpa.g.sc62.102 Carica papaya HOM05D007147 ORTHO05D009166 2.0e-08 62.0 42 64.3
Zm00001eb201910 Zea mays HOM05D007147 ORTHO05D009166 2.0e-08 62.0 38 65.8
Aqoxy5G01730 Aquilegia oxysepala HOM05D007147 ORTHO05D009166 2.6e-08 61.6 36 72.2
Phvul.011G048100 Phaseolus vulgaris HOM05D007147 ORTHO05D009166 2.6e-08 61.6 44 63.6
TPR.G20354 Trifolium pratense HOM05D007147 ORTHO05D009166 2.6e-08 61.6 44 61.4
TWI31G1240 Tripterygium wilfordii HOM05D007147 ORTHO05D009166 2.6e-08 61.6 42 64.3
VMungo1127G1103 Vigna mungo HOM05D007147 ORTHO05D009166 2.6e-08 61.6 44 63.6
AUR62039986 Chenopodium quinoa HOM05D007147 ORTHO05D009166 4.4e-08 60.8 42 59.5
AUR62011374 Chenopodium quinoa HOM05D007147 ORTHO05D009166 7.5e-08 60.1 42 59.5
Migut.B00275 Erythranthe guttata HOM05D007147 ORTHO05D009166 7.5e-08 60.1 42 61.9
Solyc01g109290.3 Solanum lycopersicum HOM05D007147 ORTHO05D009166 7.5e-08 60.1 36 66.7
Sopen01g051470 Solanum pennellii HOM05D007147 ORTHO05D009166 7.5e-08 60.1 36 66.7
PGSC0003DMG400025179 Solanum tuberosum HOM05D007147 ORTHO05D009166 7.5e-08 60.1 36 66.7
vmacro02149 Vaccinium macrocarpon HOM05D007147 ORTHO05D009166 7.5e-08 60.1 42 64.3
AUR62027458 Chenopodium quinoa HOM05D007147 ORTHO05D009166 9.8e-08 59.7 42 59.5
Glyma.11G121200 Glycine max HOM05D007147 ORTHO05D009166 9.8e-08 59.7 44 61.4
CANSAT11G2593 Cannabis sativa HOM05D007147 ORTHO05D009166 1.3e-07 59.3 38 65.8
FAN20G1128 Fragaria x ananassa HOM05D007147 ORTHO05D009166 1.3e-07 59.3 43 62.8
Ah.01g019690 Amaranthus hybridus HOM05D007147 ORTHO05D009166 1.7e-07 58.9 27 88.9
Lj3g0019789 Lotus japonicus HOM05D007147 ORTHO05D009166 1.7e-07 58.9 44 61.4
MBI16_g13157_MAGBIO Magnolia biondii HOM05D007147 ORTHO05D009166 2.9e-07 58.2 50 58.0
Glyma.12G046300 Glycine max HOM05D007147 ORTHO05D009166 4.9e-07 57.4 44 59.1
SGA_v2.0_scaffold58G20579 Striga asiatica HOM05D007147 ORTHO05D009166 6.4e-07 57.0 38 68.4
Nitab4.5_0004280g0130 Nicotiana tabacum HOM05D007147 ORTHO05D009166 8.3e-07 56.6 36 63.9
Os11g0557700 Oryza sativa ssp. japonica HOM05D007147 ORTHO05D009166 8.3e-07 56.6 38 57.9
Pp3c5_4770 Physcomitrium patens HOM05D007147 ORTHO05D009166 8.3e-07 56.6 35 71.4
CAN.G322.104 Capsicum annuum HOM05D007147 ORTHO05D009166 1.4e-06 55.8 36 63.9
unitig_21.g20771 Utricularia gibba HOM05D007147 ORTHO05D009166 2.4e-06 55.1 36 69.4
HPP92_027474 Vanilla planifolia HOM05D007147 ORTHO05D009166 5.4e-06 53.9 37 64.9
AagrBONN_evm.TU.Sc2ySwM_369.500 Anthoceros agrestis HOM05D007147 ORTHO05D009166 9.2e-06 53.1 42 57.1


User provided reference genes

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