Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00805 Brassica carinata HOM05D002759 ORTHO05D032766 1.2e-52 209.5 107 100.0
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 1.9e-16 89.4 50 86.0
C03p84490 Brassica napus HOM05D002759 ORTHO05D032766 1.9e-16 89.4 44 97.7
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.9e-16 89.4 50 86.0
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 7.1e-16 87.4 50 86.0
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 6.0e-15 84.3 82 58.5
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.0e-14 83.6 50 80.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 1.3e-14 83.2 50 80.0
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.3e-14 83.2 50 78.0
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-14 83.2 50 80.0
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 1.3e-14 83.2 50 80.0
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 3.0e-14 82.0 50 78.0
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 6.7e-14 80.9 50 78.0
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 8.7e-14 80.5 82 57.3
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 2.5e-13 79.0 50 78.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.5e-13 79.0 50 78.0
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.5e-13 79.0 50 78.0
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 2.5e-13 79.0 50 78.0
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 8.2e-12 73.9 51 76.5
CARHR230000 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.5e-10 68.2 46 71.7
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 1.3e-09 66.6 50 64.0
CARHR073260 Cardamine hirsuta HOM05D002759 ORTHO05D003290 6.5e-09 64.3 46 69.6
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 3.2e-08 62.0 48 66.7
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-07 60.1 48 62.5
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.2e-07 60.1 48 62.5
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 2.1e-07 59.3 48 62.5
Cpa.g.sc148.32 Carica papaya HOM05D002759 ORTHO05D003290 2.7e-07 58.9 48 64.6
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 4.6e-07 58.2 47 68.1
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 4.6e-07 58.2 48 66.7
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 6.0e-07 57.8 50 62.0
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 6.0e-07 57.8 50 62.0
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 6.0e-07 57.8 50 62.0
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 6.0e-07 57.8 48 62.5
C03p84410 Brassica napus HOM05D002759 ORTHO05D032766 7.9e-07 57.4 33 84.8
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 7.9e-07 57.4 49 65.3
C03p84510 Brassica napus HOM05D002759 ORTHO05D100376 1.0e-06 57.0 43 72.1
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.0e-06 57.0 48 62.5
CARHR254480 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.3e-06 56.6 50 60.0
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 1.3e-06 56.6 48 60.4
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.3e-06 56.6 67 50.7
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.8e-06 56.2 49 59.2
BcaC01g00806 Brassica carinata HOM05D000205 ORTHO05D024173 2.3e-06 55.8 42 71.4
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 2.3e-06 55.8 47 66.0
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 2.3e-06 55.8 47 63.8
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 2.3e-06 55.8 48 62.5
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.3e-06 55.8 48 62.5
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 2.3e-06 55.8 48 64.6
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 3.0e-06 55.5 48 62.5
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 3.0e-06 55.5 48 60.4
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 3.0e-06 55.5 48 62.5
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.0e-06 55.5 48 64.6
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 3.9e-06 55.1 50 60.0
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.9e-06 55.1 69 47.8
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.9e-06 55.1 69 47.8
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 3.9e-06 55.1 48 56.2
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 5.1e-06 54.7 49 63.3
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 6.7e-06 54.3 48 62.5
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 6.7e-06 54.3 47 61.7
MD15G1419000 Malus domestica HOM05D002759 ORTHO05D003290 6.7e-06 54.3 48 64.6
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.7e-06 54.3 49 61.2


User provided reference genes

Program Settings