Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 2.4e-116 422.2 211 100.0
C08p01560 Brassica napus HOM05D056010 ORTHO05D039557 8.2e-32 141.4 73 94.5
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 1.0e-26 124.4 102 73.5
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 2.9e-21 106.3 216 40.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 2.9e-21 106.3 216 40.3
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-19 100.9 216 38.4
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 6.1e-19 98.6 106 59.4
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.0e-18 96.3 217 36.4
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 6.7e-18 95.1 216 36.6
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.5e-17 94.0 216 38.0
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.5e-17 94.0 216 38.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.7e-17 92.0 216 36.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 9.7e-17 91.3 53 94.3
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.2e-14 84.3 212 35.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.0e-14 83.6 216 34.3
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.5e-14 82.4 216 33.8
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 5.5e-12 75.5 216 32.9
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.8e-08 63.2 34 85.3
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 4.8e-08 62.4 53 64.2
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 4.8e-08 62.4 216 29.2
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.8e-08 62.4 34 85.3
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.3e-08 62.0 213 29.1
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 8.3e-08 61.6 52 63.5
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 8.3e-08 61.6 213 28.6
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.1e-07 61.2 34 82.4
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.1e-07 61.2 34 79.4
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.1e-07 61.2 34 76.5
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.4e-07 60.8 34 82.4
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.8e-07 60.5 68 51.5
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 1.8e-07 60.5 34 82.4
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.8e-07 60.5 34 73.5
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.4e-07 60.1 34 79.4
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.4e-07 60.1 52 61.5
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 2.4e-07 60.1 34 82.4
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.4e-07 60.1 34 82.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 2.4e-07 60.1 34 79.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 3.1e-07 59.7 213 27.7
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 3.1e-07 59.7 34 79.4
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.1e-07 59.7 34 79.4
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 3.1e-07 59.7 34 82.4
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.1e-07 59.7 34 82.4
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 4.1e-07 59.3 34 79.4
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 4.1e-07 59.3 34 79.4
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 4.1e-07 59.3 34 79.4
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 5.4e-07 58.9 213 27.7
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 5.4e-07 58.9 216 27.8
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 5.4e-07 58.9 34 76.5
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 5.4e-07 58.9 34 76.5
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.4e-07 58.9 34 79.4
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.4e-07 58.9 34 79.4
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 7.0e-07 58.5 34 76.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 7.0e-07 58.5 34 76.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.0e-07 58.5 34 76.5
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 7.0e-07 58.5 34 76.5
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.1e-07 58.2 51 60.8
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 9.1e-07 58.2 51 60.8
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 9.1e-07 58.2 34 76.5
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 9.1e-07 58.2 34 79.4
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 9.1e-07 58.2 34 76.5
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 9.1e-07 58.2 34 76.5
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 9.1e-07 58.2 37 70.3
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 9.1e-07 58.2 34 76.5
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.2e-06 57.8 34 79.4
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 1.2e-06 57.8 34 79.4
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-06 57.8 34 76.5
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.2e-06 57.8 35 77.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.6e-06 57.4 34 76.5
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.6e-06 57.4 33 72.7
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 1.6e-06 57.4 34 76.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 76.5
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 79.4
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 79.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.0e-06 57.0 33 75.8
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 76.5
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.0e-06 57.0 34 73.5
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 2.7e-06 56.6 34 73.5
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 2.7e-06 56.6 29 86.2
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 2.7e-06 56.6 31 80.6
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.7e-06 56.6 33 78.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.7e-06 56.6 33 75.8
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.7e-06 56.6 34 73.5
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 73.5
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 76.5
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 76.5
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 76.5
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 70.6
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 73.5
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.5e-06 56.2 34 76.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 4.5e-06 55.8 33 75.8
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 4.5e-06 55.8 34 73.5
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 4.5e-06 55.8 34 70.6
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.9e-06 55.5 34 76.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 5.9e-06 55.5 38 60.5
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 5.9e-06 55.5 34 70.6
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 5.9e-06 55.5 34 70.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.9e-06 55.5 34 73.5
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 5.9e-06 55.5 34 73.5


User provided reference genes

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