Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-50 202.6 99 100.0
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-49 199.1 99 98.0
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-46 189.1 92 98.9
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 7.5e-44 180.3 88 97.7
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 6.3e-43 177.2 88 95.5
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-42 176.4 85 100.0
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-40 169.5 94 87.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-40 169.5 94 87.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.3e-40 169.5 94 87.2
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-40 168.7 94 86.2
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 3.8e-40 167.9 94 85.1
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 8.6e-40 166.8 92 88.0
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 2.5e-39 165.2 99 83.8
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 4.2e-39 164.5 92 85.9
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 5.5e-39 164.1 92 84.8
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 7.2e-39 163.7 94 87.2
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 7.2e-39 163.7 94 83.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 7.2e-39 163.7 92 88.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 9.5e-39 163.3 92 85.9
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 9.5e-39 163.3 94 83.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 9.5e-39 163.3 94 85.1
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.5e-39 163.3 92 88.0
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 9.5e-39 163.3 92 85.9
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.2e-38 162.9 94 83.0
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-38 162.9 92 87.0
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.6e-38 162.5 94 84.0
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.6e-38 162.5 94 81.9
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.6e-38 162.5 102 79.4
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.1e-38 162.2 92 84.8
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.1e-38 162.2 92 85.9
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 2.8e-38 161.8 99 80.8
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.8e-38 161.8 92 85.9
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.8e-38 161.8 92 87.0
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 3.6e-38 161.4 92 84.8
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.6e-38 161.4 92 84.8
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 3.6e-38 161.4 92 85.9
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.6e-38 161.4 99 81.8
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 3.6e-38 161.4 92 84.8
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.6e-38 161.4 92 87.0
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 4.7e-38 161.0 91 84.6
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 4.7e-38 161.0 91 84.6
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.7e-38 161.0 91 84.6
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 4.7e-38 161.0 91 84.6
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 4.7e-38 161.0 91 84.6
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.7e-38 161.0 91 84.6
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 6.1e-38 160.6 92 85.9
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 6.1e-38 160.6 92 85.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 6.1e-38 160.6 99 79.8
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.1e-38 160.6 92 85.9
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 6.1e-38 160.6 92 85.9
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 85.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 84.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 87.0
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 8.0e-38 160.2 94 83.0
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 84.8
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 85.9
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 8.0e-38 160.2 94 83.0
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.0e-38 160.2 94 83.0
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 85.9
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 84.8
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 84.8
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 8.0e-38 160.2 94 83.0
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 85.9
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 87.0
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 8.0e-38 160.2 90 83.3
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 87.0
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 8.0e-38 160.2 92 87.0
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.0e-37 159.8 92 85.9
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.0e-37 159.8 92 83.7
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.0e-37 159.8 99 78.8
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.4e-37 159.5 94 80.9
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.4e-37 159.5 94 83.0
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.4e-37 159.5 92 84.8
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.8e-37 159.1 92 83.7
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.8e-37 159.1 94 81.9
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.8e-37 159.1 92 84.8
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.8e-37 159.1 92 84.8
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 2.3e-37 158.7 92 84.8
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.3e-37 158.7 92 83.7
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 2.3e-37 158.7 92 85.9
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 2.3e-37 158.7 92 84.8
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 2.3e-37 158.7 92 84.8
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.3e-37 158.7 99 78.8
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.3e-37 158.7 90 82.2
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.0e-37 158.3 92 83.7
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 3.0e-37 158.3 92 83.7
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 3.0e-37 158.3 92 84.8
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 3.0e-37 158.3 94 79.8
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.0e-37 157.9 94 79.8
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 4.0e-37 157.9 99 83.8
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 4.0e-37 157.9 92 82.6
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 4.0e-37 157.9 92 82.6
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 4.0e-37 157.9 92 82.6
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 4.0e-37 157.9 92 82.6
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 4.0e-37 157.9 92 84.8
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 5.2e-37 157.5 92 83.7
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 5.2e-37 157.5 92 83.7
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.2e-37 157.5 92 84.8
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 5.2e-37 157.5 92 83.7
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 5.2e-37 157.5 92 83.7
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 6.8e-37 157.1 92 83.7
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 6.8e-37 157.1 92 82.6
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 6.8e-37 157.1 92 83.7
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 6.8e-37 157.1 92 83.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 6.8e-37 157.1 92 82.6
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 6.8e-37 157.1 92 83.7
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 8.8e-37 156.8 92 83.7
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 8.8e-37 156.8 92 82.6
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 8.8e-37 156.8 92 82.6
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 8.8e-37 156.8 92 84.8
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.2e-36 156.4 92 82.6
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.2e-36 156.4 92 81.5
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.2e-36 156.4 92 82.6
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.5e-36 156.0 92 82.6
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.5e-36 156.0 92 82.6
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.5e-36 156.0 92 82.6
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.5e-36 156.0 92 83.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 2.0e-36 155.6 92 82.6
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.0e-36 155.6 92 82.6
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.0e-36 155.6 92 83.7
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.6e-36 155.2 92 80.4
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.6e-36 155.2 92 81.5
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 2.6e-36 155.2 92 81.5
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.6e-36 155.2 92 81.5
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 3.4e-36 154.8 92 83.7
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.4e-36 154.5 92 81.5
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 5.7e-36 154.1 92 81.5
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 7.5e-36 153.7 92 80.4
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 7.5e-36 153.7 92 81.5
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 7.5e-36 153.7 92 82.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.5e-36 153.7 92 80.4
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 9.8e-36 153.3 92 80.4
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 9.8e-36 153.3 91 81.3
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 9.8e-36 153.3 92 81.5
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 2.8e-35 151.8 92 81.5
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.7e-35 151.4 92 78.3
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.4e-34 149.4 92 77.2
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.1e-34 148.3 92 76.1
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 3.1e-34 148.3 92 80.4
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 5.4e-34 147.5 91 79.1
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 7.0e-34 147.1 98 77.6
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 9.2e-34 146.7 91 75.8
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.6e-33 146.0 98 71.4
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.7e-33 145.2 91 75.8
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.7e-32 142.5 92 75.0
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.9e-31 139.0 92 76.1
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.3e-31 138.3 92 71.7
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-30 136.3 81 84.0
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.8e-29 130.6 98 69.4
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 6.8e-29 130.6 93 66.7
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 4.4e-28 127.9 92 64.1
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 4.4e-28 127.9 94 63.8
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 2.9e-27 125.2 89 65.2
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.1e-26 123.2 88 69.3
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.9e-24 114.8 57 91.2
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 8.6e-24 113.6 87 65.5
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-23 113.2 92 66.3
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 2.8e-22 108.6 94 64.9
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.2e-18 95.1 84 57.1
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 4.1e-18 94.7 97 50.5
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 2.0e-17 92.4 87 55.2
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.7e-17 92.0 88 53.4
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.7e-16 89.4 55 78.2
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-15 85.5 53 77.4
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.6e-14 82.8 53 73.6
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 2.3e-13 79.0 39 94.9
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-12 76.6 39 92.3
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.9e-12 73.6 40 82.5
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 1.9e-10 69.3 38 84.2
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.0e-08 63.5 36 83.3
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 1.2e-06 56.6 30 93.3
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 3.6e-06 55.1 92 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 6.2e-06 54.3 83 37.3


User provided reference genes

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