Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 3.2e-40 167.9 82 100.0
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 3.2e-40 167.9 82 100.0
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 3.2e-40 167.9 82 100.0
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 7.1e-40 166.8 82 98.8
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 1.2e-39 166.0 82 98.8
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 2.7e-39 164.9 82 98.8
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 2.7e-39 164.9 82 97.6
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 6.0e-39 163.7 82 97.6
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 6.0e-39 163.7 82 97.6
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 1.0e-38 162.9 82 96.3
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 1.0e-38 162.9 82 95.1
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 5.1e-38 160.6 82 92.7
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 1.5e-37 159.1 82 92.7
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 3.3e-37 157.9 76 100.0
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 3.3e-37 157.9 76 100.0
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 3.3e-37 157.9 76 100.0
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 3.3e-37 157.9 76 100.0
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 3.3e-37 157.9 76 100.0
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 3.3e-37 157.9 76 100.0
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 7.3e-37 156.8 76 98.7
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 1.3e-36 156.0 76 98.7
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 1.3e-36 156.0 76 98.7
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 2.1e-36 155.2 76 97.4
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 2.8e-36 154.8 76 98.7
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 3.1e-35 151.4 79 88.6
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 1.2e-34 149.4 82 85.4
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 1.2e-34 149.4 82 84.1
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 86.6
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 84.1
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 82.9
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 84.1
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 84.1
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 84.1
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 84.1
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 2.0e-34 148.7 82 85.4
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 2.6e-34 148.3 79 86.1
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 3.4e-34 147.9 82 85.4
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 3.4e-34 147.9 82 85.4
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 3.4e-34 147.9 82 84.1
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 4.4e-34 147.5 82 84.1
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 7.6e-34 146.7 81 82.7
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 7.6e-34 146.7 82 82.9
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 1.3e-33 146.0 82 84.1
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 1.3e-33 146.0 79 84.8
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 1.3e-33 146.0 82 82.9
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 1.7e-33 145.6 79 84.8
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 2.2e-33 145.2 76 88.2
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 4.9e-33 144.1 82 81.7
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 8.4e-33 143.3 79 84.8
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 8.4e-33 143.3 82 81.7
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 1.1e-32 142.9 79 83.5
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 1.4e-32 142.5 82 81.7
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 1.9e-32 142.1 82 80.5
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 1.9e-32 142.1 76 85.5
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 2.4e-32 141.7 76 86.8
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 2.4e-32 141.7 82 81.7
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 2.4e-32 141.7 82 80.5
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 2.4e-32 141.7 82 80.5
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 79.3
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 4.2e-32 141.0 76 85.5
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 4.2e-32 141.0 82 79.3
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 5.4e-32 140.6 82 81.7
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 5.4e-32 140.6 82 79.3
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 7.1e-32 140.2 82 79.3
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 9.3e-32 139.8 82 80.5
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 9.3e-32 139.8 79 83.5
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 1.6e-31 139.0 77 83.1
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 2.1e-31 138.7 82 78.0
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 2.1e-31 138.7 76 84.2
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 2.1e-31 138.7 77 84.4
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 2.7e-31 138.3 76 85.5
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 2.7e-31 138.3 76 84.2
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 2.7e-31 138.3 78 82.1
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 2.7e-31 138.3 76 82.9
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 3.5e-31 137.9 82 78.0
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.6e-31 137.5 82 78.0
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.6e-31 137.5 82 78.0
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 4.6e-31 137.5 82 78.0
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 4.6e-31 137.5 82 78.0
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 4.6e-31 137.5 76 84.2
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 4.6e-31 137.5 75 85.3
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 6.0e-31 137.1 79 78.5
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 7.8e-31 136.7 82 76.8
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 7.8e-31 136.7 76 82.9
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 1.0e-30 136.3 82 75.6
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 1.3e-30 136.0 80 78.8
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 1.3e-30 136.0 80 78.8
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.3e-30 136.0 79 75.9
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 1.7e-30 135.6 76 81.6
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 2.3e-30 135.2 76 82.9
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 2.3e-30 135.2 76 82.9
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 2.3e-30 135.2 79 75.9
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 3.0e-30 134.8 82 74.4
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 3.0e-30 134.8 81 76.5
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 3.9e-30 134.4 82 74.4
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 3.9e-30 134.4 82 74.4
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 3.9e-30 134.4 80 77.5
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 5.1e-30 134.0 82 75.6
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 1.5e-29 132.5 79 77.2
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 1.5e-29 132.5 77 77.9
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 2.5e-29 131.7 82 74.4
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 3.3e-29 131.3 78 78.2
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 4.3e-29 131.0 75 81.3
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 4.3e-29 131.0 76 78.9
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 5.6e-29 130.6 80 76.2
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 9.6e-29 129.8 82 75.6
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 9.6e-29 129.8 82 73.2
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 9.6e-29 129.8 75 80.0
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 1.3e-28 129.4 76 80.3
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 1.6e-28 129.0 77 75.3
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 1.6e-28 129.0 82 74.4
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 2.1e-28 128.6 75 78.7
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 3.6e-28 127.9 82 70.7
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 4.8e-28 127.5 82 69.5
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 4.8e-28 127.5 76 73.7
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 1.1e-27 126.3 76 75.0
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.1e-27 126.3 76 73.7
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 1.1e-27 126.3 82 75.6
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 1.4e-27 125.9 80 72.5
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 4.0e-27 124.4 79 70.9
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 9.0e-27 123.2 75 73.3
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 1.2e-26 122.9 77 72.7
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 3.4e-26 121.3 76 72.4
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 5.8e-26 120.6 76 69.7
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 6.0e-23 110.5 79 59.5
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 1.5e-21 105.9 75 66.7
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 2.4e-19 98.6 75 57.3
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 6.9e-19 97.1 75 56.0
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 5.8e-18 94.0 58 72.4
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 2.9e-17 91.7 76 53.9
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 3.8e-17 91.3 72 54.2
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 7.1e-16 87.0 75 49.3
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.9e-13 79.0 51 70.6
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 7.4e-13 77.0 69 47.8
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 8.2e-12 73.6 74 45.9
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.8e-11 72.4 69 55.1
Aa31LG9G8470 Aethionema arabicum HOM05D005477 ORTHO05D006721 5.3e-11 70.9 38 84.2
MBI15_g35018_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.3e-09 66.2 40 72.5


User provided reference genes

Program Settings