Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00652 Brassica carinata HOM05D004959 ORTHO05D005961 1.3e-60 236.1 114 100.0
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 7.8e-29 130.6 190 46.8
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.3e-28 129.8 184 46.7
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 1.7e-28 129.4 189 45.0
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.9e-27 125.9 187 43.9
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 4.3e-27 124.8 189 44.4
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 7.3e-27 124.0 189 42.3
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 2.1e-26 122.5 189 43.9
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 8.1e-26 120.6 189 42.9
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 2.4e-25 119.0 186 43.0
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 1.3e-23 113.2 183 42.1
C03p82730 Brassica napus HOM05D004959 ORTHO05D005961 2.7e-21 105.5 48 95.8
BolC3t20554H Brassica oleracea HOM05D004959 ORTHO05D005961 2.7e-21 105.5 48 95.8
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 1.7e-20 102.8 154 44.8
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 2.2e-15 85.9 47 83.0
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 1.3e-12 76.6 189 32.8
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 3.9e-12 75.1 188 31.9
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 6.7e-12 74.3 45 73.3
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 6.7e-12 74.3 47 70.2
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 1.1e-11 73.6 48 70.8
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.5e-11 72.4 46 69.6
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 2.5e-11 72.4 46 69.6
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 3.3e-11 72.0 45 64.4
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 4.3e-11 71.6 43 65.1
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 4.3e-11 71.6 45 71.1
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 5.6e-11 71.2 46 63.0
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 7.4e-11 70.9 47 61.7
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 7.4e-11 70.9 47 66.0
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 1.3e-10 70.1 47 63.8
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 2.1e-10 69.3 43 69.8
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 2.1e-10 69.3 46 60.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 2.1e-10 69.3 45 66.7
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 2.1e-10 69.3 44 65.9
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 2.1e-10 69.3 46 63.0
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 2.8e-10 68.9 46 58.7
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 2.8e-10 68.9 43 72.1
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 3.6e-10 68.6 46 58.7
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 6.2e-10 67.8 46 56.5
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 6.2e-10 67.8 45 64.4
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 8.1e-10 67.4 45 64.4
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 8.1e-10 67.4 45 68.9
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 1.1e-09 67.0 47 68.1
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 1.4e-09 66.6 43 67.4
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 1.4e-09 66.6 47 61.7
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 1.4e-09 66.6 46 63.0
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.8e-09 66.2 43 65.1
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 2.4e-09 65.9 47 61.7
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.4e-09 65.9 45 68.9
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.4e-09 65.9 44 65.9
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.1e-09 65.5 47 61.7
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 3.1e-09 65.5 44 63.6
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 3.1e-09 65.5 44 63.6
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 4.0e-09 65.1 43 65.1
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 5.3e-09 64.7 47 59.6
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.3e-09 64.7 46 58.7
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 5.3e-09 64.7 46 58.7
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 5.3e-09 64.7 45 64.4
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 6.9e-09 64.3 46 58.7
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 6.9e-09 64.3 44 65.9
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 9.0e-09 63.9 47 57.4
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 9.0e-09 63.9 189 30.7
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 9.0e-09 63.9 45 66.7
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 1.2e-08 63.5 43 60.5
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.2e-08 63.5 45 66.7
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 1.5e-08 63.2 45 66.7
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 1.5e-08 63.2 43 58.1
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 2.0e-08 62.8 47 57.4
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 2.0e-08 62.8 44 59.1
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 3.4e-08 62.0 42 61.9
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 3.4e-08 62.0 45 64.4
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 3.4e-08 62.0 47 59.6
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 9.9e-08 60.5 46 58.7
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.3e-07 60.1 46 56.5
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 2.2e-07 59.3 52 51.9
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 4.9e-07 58.2 44 63.6
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 6.4e-07 57.8 43 62.8
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 8.4e-07 57.4 45 62.2
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 8.4e-07 57.4 45 60.0
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 1.1e-06 57.0 43 60.5
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 1.4e-06 56.6 43 60.5


User provided reference genes

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