Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00633 Brassica carinata HOM05D001579 ORTHO05D003470 6.9e-44 180.3 92 100.0
A09p57990 Brassica napus HOM05D001579 ORTHO05D003470 1.8e-36 155.6 94 86.2
BcaC07g41119 Brassica carinata HOM05D001579 ORTHO05D003470 2.4e-36 155.2 94 85.1
BolC8t51687H Brassica oleracea HOM05D001579 ORTHO05D003470 2.4e-36 155.2 94 85.1
C08p41200 Brassica napus HOM05D001579 ORTHO05D003470 3.1e-36 154.8 94 84.0
BraA09t41189Z Brassica rapa HOM05D001579 ORTHO05D003470 3.1e-36 154.8 91 87.9
BcaB01g00883 Brassica carinata HOM05D001579 ORTHO05D003470 7.0e-36 153.7 94 85.1
C09p46380 Brassica napus HOM05D001579 ORTHO05D003470 3.5e-35 151.4 94 85.1
BcaB08g35003 Brassica carinata HOM05D001579 ORTHO05D003470 7.7e-35 150.2 94 81.9
BcaC02g08772 Brassica carinata HOM05D001579 ORTHO05D003470 1.4e-31 139.4 94 75.5
A04p16340 Brassica napus HOM05D001579 ORTHO05D003470 1.4e-31 139.4 94 75.5
C04p50830 Brassica napus HOM05D001579 ORTHO05D003470 1.4e-31 139.4 94 75.5
BolC4t26677H Brassica oleracea HOM05D001579 ORTHO05D003470 1.4e-31 139.4 94 75.5
BraA04t17272Z Brassica rapa HOM05D001579 ORTHO05D003470 1.8e-31 139.0 94 75.5
A10p12820 Brassica napus HOM05D001579 ORTHO05D003470 2.3e-31 138.7 91 83.5
BraA10t43375Z Brassica rapa HOM05D001579 ORTHO05D003470 2.3e-31 138.7 91 83.5
BcaB06g27782 Brassica carinata HOM05D001579 ORTHO05D003470 4.4e-30 134.4 94 71.3
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 5.7e-30 134.0 94 72.3
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 9.7e-30 133.3 95 71.6
BcaB03g12963 Brassica carinata HOM05D001579 ORTHO05D003470 1.7e-29 132.5 94 72.3
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 4.8e-29 131.0 95 68.4
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.4e-28 129.4 95 70.5
Carub.0004s0076 Capsella rubella HOM05D001579 ORTHO05D003470 2.4e-28 128.6 91 70.3
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 7.0e-28 127.1 94 68.1
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 9.1e-28 126.7 95 68.4
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 3.5e-27 124.8 94 66.0
Potri.004G155000 Populus trichocarpa HOM05D001579 ORTHO05D003470 1.3e-26 122.9 94 64.9
AL7G31990 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 2.2e-26 122.1 94 64.9
Carub.0005s1088 Capsella rubella HOM05D001579 ORTHO05D003470 5.0e-26 120.9 93 63.4
Sabra04G0102800 Salix brachista HOM05D001579 ORTHO05D003470 8.5e-26 120.2 94 61.7
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 1.1e-25 119.8 94 64.9
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 2.5e-25 118.6 95 63.2
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 3.2e-25 118.2 91 62.6
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 4.2e-25 117.9 91 63.7
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 4.2e-25 117.9 94 63.8
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 5.5e-25 117.5 94 63.8
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 9.4e-25 116.7 94 62.8
Potri.009G116100 Populus trichocarpa HOM05D001579 ORTHO05D003470 9.4e-25 116.7 94 59.6
AL4G10950 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.2e-24 116.3 95 58.9
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 1.2e-24 116.3 94 60.6
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 6.1e-24 114.0 94 59.6
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 6.1e-24 114.0 94 60.6
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 1.0e-23 113.2 94 60.6
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 1.4e-23 112.8 94 61.7
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 6.8e-23 110.5 94 60.6
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 1.2e-22 109.8 94 60.6
Thhalv10007412m.g Eutrema salsugineum HOM05D001579 ORTHO05D003470 1.2e-22 109.8 91 61.5
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 2.0e-22 109.0 94 58.5
Lj7A253G28 Lonicera japonica HOM05D001579 ORTHO05D003470 2.6e-22 108.6 83 61.4
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 2.6e-22 108.6 94 58.5
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 2.6e-22 108.6 94 58.5
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 5.7e-22 107.5 94 56.4
Lj7A248G13 Lonicera japonica HOM05D001579 ORTHO05D003470 5.7e-22 107.5 83 60.2
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 7.5e-22 107.1 94 56.4
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 7.5e-22 107.1 94 58.5
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 7.5e-22 107.1 94 58.5
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 9.8e-22 106.7 94 57.4
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 1.3e-21 106.3 90 58.9
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 1.7e-21 105.9 94 58.5
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 1.7e-21 105.9 94 56.4
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 2.2e-21 105.5 94 56.4
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 3.7e-21 104.8 83 60.2
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 4.8e-21 104.4 91 57.1
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 6.3e-21 104.0 94 60.6
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 6.3e-21 104.0 94 61.7
SHI02915 Sapria himalayana HOM05D001579 ORTHO05D003470 6.3e-21 104.0 94 52.1
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 1.1e-20 103.2 94 58.5
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 1.8e-20 102.4 94 55.3
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.8e-20 102.4 94 56.4
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 1.8e-20 102.4 91 58.2
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 2.4e-20 102.1 94 54.3
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 2.4e-20 102.1 94 56.4
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 4.1e-20 101.3 91 54.9
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 4.1e-20 101.3 94 56.4
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 5.4e-20 100.9 91 54.9
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 7.0e-20 100.5 91 57.1
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 9.1e-20 100.1 94 57.4
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 1.2e-19 99.8 94 54.3
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.6e-19 99.4 91 52.7
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.6e-19 99.4 91 53.8
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 2.0e-19 99.0 91 52.7
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 2.7e-19 98.6 94 53.2
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 2.7e-19 98.6 94 55.3
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 2.7e-19 98.6 94 53.2
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 3.5e-19 98.2 91 54.9
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 3.5e-19 98.2 91 51.6
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 5.9e-19 97.4 91 53.8
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 5.9e-19 97.4 91 53.8
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 7.7e-19 97.1 91 54.9
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 1.0e-18 96.7 94 55.3
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.0e-18 96.7 94 53.2
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.3e-18 96.3 91 54.9
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.7e-18 95.9 91 54.9
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 1.7e-18 95.9 94 55.3
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 1.7e-18 95.9 94 52.1
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 1.7e-18 95.9 94 52.1
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 2.2e-18 95.5 91 53.8
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 2.2e-18 95.5 94 55.3
DCAR_006199 Daucus carota HOM05D001579 ORTHO05D003470 3.8e-18 94.7 94 50.0
HPP92_002580 Vanilla planifolia HOM05D001579 ORTHO05D003470 5.0e-18 94.4 95 52.6
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 6.5e-18 94.0 94 52.1
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.1e-17 93.2 91 54.9
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 1.1e-17 93.2 91 54.9
Ah.12g056180 Amaranthus hybridus HOM05D001579 ORTHO05D003470 1.5e-17 92.8 91 56.0
AUR62034190 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.5e-17 92.8 87 57.5
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 5.5e-17 90.9 95 48.4
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 9.5e-17 90.1 91 53.8
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 9.5e-17 90.1 90 48.9
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 1.2e-16 89.7 94 50.0
arahy.Tifrunner.gnm1.ann1.5AJQ1U Arachis hypogaea HOM05D001579 ORTHO05D003470 1.6e-16 89.4 94 50.0
AUR62003165 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.6e-16 89.4 91 56.0
AUR62034498 Chenopodium quinoa HOM05D001579 ORTHO05D003470 1.6e-16 89.4 91 54.9
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 1.6e-16 89.4 88 48.9
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 2.1e-16 89.0 94 47.9
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 2.8e-16 88.6 94 50.0
BcaC03g13561 Brassica carinata HOM05D001579 ORTHO05D017611 3.6e-16 88.2 53 86.8
Oeu015994.1 Olea europaea HOM05D001579 ORTHO05D003470 4.7e-16 87.8 94 50.0
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 8.0e-16 87.0 94 46.8
Aqoxy7G01384 Aquilegia oxysepala HOM05D001579 ORTHO05D003470 1.0e-15 86.7 89 50.6
CAN.G1412.7 Capsicum annuum HOM05D001579 ORTHO05D003470 1.0e-15 86.7 93 49.5
RcHm_v2.0_Chr6g0264251 Rosa chinensis HOM05D001579 ORTHO05D003470 1.4e-15 86.3 90 45.6
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 2.3e-15 85.5 93 46.2
Solyc10g007060.4 Solanum lycopersicum HOM05D001579 ORTHO05D003470 3.0e-15 85.1 93 47.3
Sopen10g002960 Solanum pennellii HOM05D001579 ORTHO05D003470 3.0e-15 85.1 93 47.3
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 4.0e-15 84.7 93 46.2
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 4.0e-15 84.7 93 47.3
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 6.8e-15 84.0 93 45.2
BcaB03g15109 Brassica carinata HOM05D001579 ORTHO05D003470 1.2e-14 83.2 95 55.8
BcaC08g46255 Brassica carinata HOM05D001579 ORTHO05D003470 1.2e-14 83.2 95 55.8
ATR1101G051 Amborella trichopoda HOM05D001579 ORTHO05D003470 1.5e-14 82.8 80 53.8
FvH4_3g28200 Fragaria vesca HOM05D001579 ORTHO05D003470 2.0e-14 82.4 91 47.3
FAN11G3917 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-14 82.4 91 47.3
FAN16G0460 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-14 82.4 91 47.3
FAN16G2055 Fragaria x ananassa HOM05D001579 ORTHO05D003470 2.0e-14 82.4 91 47.3
RcHm_v2.0_Chr6g0259031 Rosa chinensis HOM05D001579 ORTHO05D003470 3.4e-14 81.6 91 45.1
FAN21G0623 Fragaria x ananassa HOM05D001579 ORTHO05D003470 5.7e-14 80.9 91 46.2
unitig_0.g66 Utricularia gibba HOM05D001579 ORTHO05D003470 5.7e-14 80.9 111 39.6
BcaC08g46253 Brassica carinata HOM05D001579 ORTHO05D003470 1.3e-13 79.7 60 73.3
RcHm_v2.0_Chr7g0204471 Rosa chinensis HOM05D001579 ORTHO05D003470 2.8e-13 78.6 87 49.4
SalBow6G1678 Salvia bowleyana HOM05D001579 ORTHO05D003470 3.7e-13 78.2 94 44.7
SalBow6G0592 Salvia bowleyana HOM05D001579 ORTHO05D003470 4.9e-13 77.8 84 46.4
FvH4_2g08790 Fragaria vesca HOM05D001579 ORTHO05D003470 1.8e-12 75.9 90 45.6
FAN20G1104 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.8e-12 75.9 90 45.6
FAN24G0111 Fragaria x ananassa HOM05D001579 ORTHO05D003470 1.8e-12 75.9 90 45.6
SMO119G0093 Selaginella moellendorffii HOM05D001579 ORTHO05D003470 1.8e-12 75.9 90 45.6
FAN15G0032 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.1e-12 75.1 90 45.6
FAN27G2756 Fragaria x ananassa HOM05D001579 ORTHO05D003470 3.1e-12 75.1 90 45.6
PSO447G0328 Papaver somniferum HOM05D001579 ORTHO05D003470 7.0e-12 73.9 80 46.2
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 7.0e-12 73.9 94 44.7
AagrBONN_evm.TU.Sc2ySwM_344.2010 Anthoceros agrestis HOM05D001579 ORTHO05D003470 1.2e-11 73.2 89 42.7
Pp3c2_16770 Physcomitrium patens HOM05D001579 ORTHO05D003470 3.5e-11 71.6 92 47.8
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 1.7e-10 69.3 80 45.0
BcaB04g20106 Brassica carinata HOM05D001579 ORTHO05D003470 3.8e-10 68.2 67 53.7
Zm00001eb255720 Zea mays HOM05D001579 ORTHO05D003470 3.8e-10 68.2 92 43.5
Os10g0400800 Oryza sativa ssp. japonica HOM05D001579 ORTHO05D003470 5.0e-10 67.8 92 43.5
AUR62007985 Chenopodium quinoa HOM05D001579 ORTHO05D003470 9.5e-09 63.5 79 51.9
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 1.6e-08 62.8 41 70.7
Mapoly0012s0145 Marchantia polymorpha HOM05D001579 ORTHO05D003470 2.1e-08 62.4 90 38.9
CARHR112750 Cardamine hirsuta HOM05D001579 ORTHO05D003470 1.4e-07 59.7 41 63.4
C02p09550 Brassica napus HOM05D001579 ORTHO05D017611 3.0e-07 58.5 31 90.3
Duzib052G0487 Durio zibethinus HOM05D001579 ORTHO05D003470 3.4e-06 55.1 38 63.2
SEGI_17547 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 7.5e-06 53.9 49 49.0


User provided reference genes

Program Settings