Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 3.3e-160 568.9 434 100.0
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 3.3e-160 568.9 434 100.0
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 3.3e-160 568.9 434 100.0
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 9.2e-147 524.2 434 93.1
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 9.2e-147 524.2 434 95.6
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 6.0e-146 521.5 435 95.2
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 4.0e-126 455.7 436 87.4
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.1e-123 447.6 386 88.6
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.8e-121 440.3 435 83.7
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.0e-121 439.5 435 83.7
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 7.9e-106 388.3 447 76.7
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 5.3e-102 375.6 390 82.8
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-100 370.9 435 80.7
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 6.5e-100 368.6 435 80.5
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 1.4e-99 367.5 431 81.0
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 3.1e-94 349.7 388 78.1
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 2.0e-93 347.1 382 81.7
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 9.8e-72 275.0 196 79.6
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.3e-71 274.6 393 66.7
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 3.1e-70 270.0 389 69.9
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 7.7e-69 265.4 191 79.6
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 2.3e-68 263.8 391 66.2
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.5e-67 261.2 390 68.7
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.5e-67 261.2 390 68.7
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.9e-67 260.8 390 68.5
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 5.5e-67 259.2 430 64.0
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 7.2e-67 258.8 379 70.4
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 1.6e-66 257.7 455 63.7
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 1.6e-66 257.7 391 66.8
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.6e-66 257.7 391 66.8
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.1e-66 257.3 393 66.9
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 2.1e-66 257.3 392 67.6
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 2.8e-66 256.9 394 65.2
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.8e-66 256.9 438 65.1
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.1e-66 255.8 391 67.0
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 1.4e-65 254.6 396 64.9
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 2.3e-65 253.8 394 67.3
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.0e-65 253.4 391 66.5
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 4.0e-65 253.1 393 65.4
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.0e-64 250.8 391 66.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 4.4e-64 249.6 401 64.3
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.7e-63 247.7 399 67.7
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 2.2e-63 247.3 394 66.8
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 3.7e-63 246.5 392 63.5
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 1.1e-62 245.0 390 64.9
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.8e-62 244.2 396 63.9
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.2e-62 243.4 387 65.4
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 9.2e-62 241.9 395 64.3
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.2e-61 241.5 434 64.3
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-61 241.1 387 65.1
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.5e-61 240.0 400 67.0
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.3e-60 238.0 375 67.2
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.7e-60 237.7 434 64.5
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.3e-60 237.3 395 64.6
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 3.9e-60 236.5 442 61.3
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.5e-59 234.6 398 62.8
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 1.5e-59 234.6 395 63.0
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.5e-59 233.8 389 64.5
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.3e-59 233.4 396 63.1
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.3e-59 233.0 401 63.6
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.3e-59 233.0 362 69.6
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.3e-59 233.0 448 60.7
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.6e-58 231.1 396 66.2
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 2.1e-58 230.7 394 64.7
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.1e-58 230.7 392 63.8
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 3.6e-58 229.9 445 63.4
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.2e-58 229.2 393 62.8
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 8.0e-58 228.8 385 62.3
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 2.3e-57 227.3 448 60.0
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 3.1e-57 226.9 439 61.3
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 4.0e-57 226.5 391 63.4
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.0e-57 226.5 398 62.3
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 6.8e-57 225.7 389 61.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 6.8e-57 225.7 393 63.9
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 6.8e-57 225.7 392 66.1
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 8.9e-57 225.3 390 61.0
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 2.0e-56 224.2 401 63.8
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 2.0e-56 224.2 389 64.8
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.0e-56 224.2 396 61.4
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.0e-56 224.2 391 62.4
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.0e-56 224.2 453 60.7
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 9.8e-56 221.9 387 63.6
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.3e-55 221.5 432 60.2
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.3e-55 221.5 392 61.2
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.9e-55 220.3 391 61.1
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 8.3e-55 218.8 434 63.4
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.1e-54 218.4 394 59.4
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-54 218.0 395 65.8
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.4e-54 218.0 391 62.1
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 1.9e-54 217.6 432 57.4
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 2.4e-54 217.2 392 60.5
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 3.2e-54 216.9 467 57.4
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.2e-53 214.9 440 58.4
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.2e-53 214.9 396 58.8
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.6e-53 214.5 393 62.6
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 4.6e-53 213.0 399 58.4
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 6.0e-53 212.6 391 61.4
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.3e-52 211.5 398 61.3
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.7e-52 211.1 390 61.0
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 3.0e-52 210.3 388 61.3
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 3.0e-52 210.3 352 64.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 3.9e-52 209.9 397 58.2
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 5.0e-52 209.5 437 56.1
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 5.0e-52 209.5 396 60.6
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.9e-51 207.6 439 56.9
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.5e-51 207.2 390 57.9
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 3.3e-51 206.8 396 58.1
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 4.3e-51 206.5 393 61.3
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 4.3e-51 206.5 392 61.5
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.6e-51 206.1 390 59.0
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 9.5e-51 205.3 399 59.6
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 2.8e-50 203.8 432 55.8
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 6.2e-50 202.6 395 60.0
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 8.1e-50 202.2 390 58.2
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 1.5e-48 198.0 390 58.7
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.9e-47 193.7 367 62.1
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 2.9e-47 193.7 387 58.1
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 3.7e-47 193.4 430 54.4
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 4.9e-47 193.0 382 58.6
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 4.9e-47 193.0 398 56.8
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 6.4e-47 192.6 366 62.0
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 1.1e-46 191.8 394 59.1
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.9e-46 191.0 333 64.3
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.4e-46 190.7 388 63.7
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 2.4e-46 190.7 397 57.9
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 3.2e-46 190.3 387 58.7
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.1e-45 187.6 389 63.0
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 7.8e-45 185.7 376 58.8
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.3e-44 184.1 376 62.5
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 2.3e-44 184.1 390 59.0
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 7.3e-43 179.1 401 56.4
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.2e-42 178.3 389 56.0
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 8.1e-42 175.6 375 59.2
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 8.1e-42 175.6 398 55.0
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 1.1e-41 175.3 398 55.8
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 1.2e-40 171.8 337 61.1
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.1e-38 165.2 192 54.7
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.6e-37 161.4 396 54.3
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 4.6e-37 159.8 337 60.5
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 6.0e-37 159.5 445 50.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.7e-36 157.9 329 58.7
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 3.1e-33 147.1 162 64.2
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 5.2e-33 146.4 279 66.7
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.8e-31 140.2 375 38.4
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 2.7e-29 134.0 393 33.6
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.3e-28 131.7 280 63.6
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 1.3e-28 131.7 276 64.5
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.9e-28 130.2 341 51.0
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 5.6e-27 126.3 301 61.1
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 3.6e-26 123.6 256 67.6
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.1e-25 122.1 331 56.5
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 2.0e-24 117.9 247 70.4
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.2e-23 114.4 401 43.6
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.1e-22 112.1 177 44.1
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 5.4e-22 109.8 408 45.8
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.7e-21 107.5 111 56.8
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 1.3e-20 105.1 95 58.9
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.9e-20 103.6 135 48.9
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.1e-19 102.1 335 50.4
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.3e-19 99.4 92 59.8
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.2e-16 92.0 247 60.3
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 4.5e-16 90.1 99 45.5
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 9.9e-16 89.0 119 48.7
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 1.8e-12 78.2 237 32.1
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.1e-12 76.6 48 83.3
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.1e-12 76.6 48 83.3
Pp3c14_13680 Physcomitrium patens HOM05D004193 ORTHO05D004862 5.3e-09 66.6 164 29.9
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 2.6e-08 64.3 104 40.4
Ah.02g117850 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.4e-06 58.5 90 42.2
Cfa015344 Carpinus fangiana HOM05D001136 ORTHO05D001144 9.3e-06 55.8 47 59.6


User provided reference genes

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