Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00510 Brassica carinata HOM05D010948 ORTHO05D039443 1.2e-127 459.9 242 100.0
A07p28660 Brassica napus HOM05D010948 ORTHO05D013805 4.3e-77 292.0 290 60.7
BolC9t55422H Brassica oleracea HOM05D010948 ORTHO05D013805 5.4e-72 275.0 290 59.0
A01p00100 Brassica napus HOM05D010948 ORTHO05D013805 3.5e-71 272.3 238 66.8
BcaB01g05924 Brassica carinata HOM05D010948 ORTHO05D013805 2.0e-66 256.5 287 57.5
C03p80810 Brassica napus HOM05D010948 ORTHO05D039443 2.5e-61 239.6 126 100.0
C03p25990 Brassica napus HOM05D010948 ORTHO05D013805 3.4e-50 202.6 288 49.0
A03p59560 Brassica napus HOM05D010948 ORTHO05D013805 4.6e-47 192.2 221 54.3
A03p11870 Brassica napus HOM05D010948 ORTHO05D013805 1.0e-30 137.9 128 64.8
C03p51770 Brassica napus HOM05D010948 ORTHO05D013805 1.1e-29 134.4 100 76.0
BcaC04g20835 Brassica carinata HOM05D010948 ORTHO05D013805 4.7e-23 112.5 87 74.7
C09p38650 Brassica napus HOM05D010948 ORTHO05D013805 4.7e-23 112.5 87 74.7
BolC9t56721H Brassica oleracea HOM05D010948 ORTHO05D013805 4.7e-23 112.5 87 74.7
BcaB07g31310 Brassica carinata HOM05D029219 ORTHO05D091766 1.0e-22 111.3 79 72.2
C08p42710 Brassica napus HOM05D011556 ORTHO05D014123 3.7e-20 102.8 142 43.0
A09p03830 Brassica napus HOM05D011556 ORTHO05D014123 4.1e-19 99.4 220 37.3
C07p15790 Brassica napus HOM05D011556 ORTHO05D014123 9.1e-19 98.2 220 37.7
C08p35010 Brassica napus HOM05D009754 ORTHO05D033217 3.5e-18 96.3 103 53.4
BolC2t06272H Brassica oleracea HOM05D011556 ORTHO05D014123 3.5e-18 96.3 95 53.7
BraA08t34218Z Brassica rapa HOM05D010893 ORTHO05D016035 5.9e-18 95.5 127 47.2
BolC2t10052H Brassica oleracea HOM05D011556 ORTHO05D014123 1.7e-17 94.0 106 53.8
A09p23120 Brassica napus HOM05D010948 ORTHO05D013805 2.2e-17 93.6 74 73.0
BraA09t37915Z Brassica rapa HOM05D010948 ORTHO05D013805 2.2e-17 93.6 74 73.0
C02p10230 Brassica napus HOM05D011556 ORTHO05D014123 2.9e-17 93.2 189 37.6
C08p49870 Brassica napus HOM05D011556 ORTHO05D041066 3.8e-17 92.8 156 41.7
C02p63430 Brassica napus HOM05D014255 ORTHO05D015450 6.5e-17 92.0 136 47.8
BolC2t12410H Brassica oleracea HOM05D014255 ORTHO05D015450 6.5e-17 92.0 136 47.8
BraA02t06231Z Brassica rapa HOM05D011556 ORTHO05D014123 1.9e-16 90.5 119 43.7
BolC8t52515H Brassica oleracea HOM05D011556 ORTHO05D041066 2.5e-16 90.1 156 41.0
C04p72720 Brassica napus HOM05D009754 ORTHO05D014123 5.5e-16 89.0 125 45.6
C03p32540 Brassica napus HOM05D014255 ORTHO05D015450 7.2e-16 88.6 129 48.1
BolC8t47552H Brassica oleracea HOM05D010893 ORTHO05D016035 7.2e-16 88.6 160 42.5
C07p10670 Brassica napus HOM05D009935 ORTHO05D012055 9.4e-16 88.2 84 59.5
C08p07080 Brassica napus HOM05D010893 ORTHO05D016035 1.2e-15 87.8 115 47.0
BraA04t18895Z Brassica rapa HOM05D010893 ORTHO05D039094 1.2e-15 87.8 101 53.5
C03p09920 Brassica napus HOM05D010893 ORTHO05D016035 1.6e-15 87.4 162 42.0
BcaB01g05158 Brassica carinata HOM05D010893 ORTHO05D016035 2.1e-15 87.0 198 34.8
C05p02990 Brassica napus HOM05D009754 ORTHO05D101014 2.1e-15 87.0 122 48.4
C04p32520 Brassica napus HOM05D011556 ORTHO05D014123 3.6e-15 86.3 84 58.3
BcaB07g33645 Brassica carinata HOM05D010893 ORTHO05D014123 3.0e-14 83.2 174 39.1
BcaC06g32745 Brassica carinata HOM05D009754 ORTHO05D020043 3.0e-14 83.2 94 54.3
BcaC07g38101 Brassica carinata HOM05D009754 ORTHO05D027209 4.0e-14 82.8 97 50.5
C02p29070 Brassica napus HOM05D009754 ORTHO05D020043 6.8e-14 82.0 94 53.2
BraA10t43860Z Brassica rapa HOM05D009754 ORTHO05D020043 8.8e-14 81.6 97 50.5
BcaC06g35412 Brassica carinata HOM05D010893 ORTHO05D016035 2.6e-13 80.1 110 45.5
BraA08t34184Z Brassica rapa HOM05D009754 ORTHO05D020043 4.4e-13 79.3 94 52.1
BcaC02g07870 Brassica carinata HOM05D010893 ORTHO05D016035 5.7e-13 79.0 127 42.5
A03p05560 Brassica napus HOM05D010948 ORTHO05D013805 9.8e-13 78.2 116 47.4
BcaB01g01362 Brassica carinata HOM05D009754 ORTHO05D020043 1.4e-11 74.3 94 52.1
C02p58310 Brassica napus HOM05D010948 ORTHO05D013805 4.1e-11 72.8 110 46.4
C07p18370 Brassica napus HOM05D009754 ORTHO05D033217 4.1e-11 72.8 62 59.7
BcaC04g18681 Brassica carinata HOM05D009754 ORTHO05D027209 9.2e-11 71.6 94 50.0
C03p08410 Brassica napus HOM05D010948 ORTHO05D000169 1.2e-10 71.2 215 32.1
C06p44540 Brassica napus HOM05D009754 ORTHO05D027209 3.5e-10 69.7 94 47.9
BcaC08g47238 Brassica carinata HOM05D010893 ORTHO05D032352 4.5e-10 69.3 142 35.9
BcaB03g13577 Brassica carinata HOM05D017424 ORTHO05D032352 5.9e-10 68.9 121 38.0
BraA03t13996Z Brassica rapa HOM05D012445 ORTHO05D018631 1.9e-08 63.9 86 45.3
BraA09t36164Z Brassica rapa HOM05D012445 ORTHO05D018631 1.9e-08 63.9 86 45.3
BraA04t17515Z Brassica rapa HOM05D012445 ORTHO05D018631 2.5e-08 63.5 86 45.3
BcaC08g46504 Brassica carinata HOM05D009754 ORTHO05D027209 7.3e-08 62.0 94 44.7
BcaB05g23955 Brassica carinata HOM05D019895 ORTHO05D019895 9.5e-08 61.6 78 47.4
C08p03380 Brassica napus HOM05D008956 ORTHO05D016720 1.2e-07 61.2 81 46.9
BcaC07g39633 Brassica carinata HOM05D017424 ORTHO05D039094 1.6e-07 60.8 101 43.6
A08p33410 Brassica napus HOM05D003240 ORTHO05D017535 1.6e-07 60.8 136 38.2
BraA03t12219Z Brassica rapa HOM05D003240 ORTHO05D017535 1.6e-07 60.8 136 38.2
BolC6t36746H Brassica oleracea HOM05D012445 ORTHO05D040835 6.1e-07 58.9 94 44.7
BolC6t39347H Brassica oleracea HOM05D012445 ORTHO05D041381 6.1e-07 58.9 94 44.7
BraA03t14966Z Brassica rapa HOM05D008956 ORTHO05D016720 6.1e-07 58.9 81 46.9
C06p40860 Brassica napus HOM05D012445 ORTHO05D041381 8.0e-07 58.5 94 44.7
C06p45540 Brassica napus HOM05D017424 ORTHO05D032352 1.0e-06 58.2 79 45.6
BolC1t00874H Brassica oleracea HOM05D003240 ORTHO05D023867 1.0e-06 58.2 75 46.7
BraA06t23408Z Brassica rapa HOM05D001897 ORTHO05D001953 1.0e-06 58.2 53 56.6
BcaC02g08188 Brassica carinata HOM05D003240 ORTHO05D017535 1.4e-06 57.8 136 37.5
C04p07300 Brassica napus HOM05D011346 ORTHO05D015475 1.4e-06 57.8 77 49.4
C04p57490 Brassica napus HOM05D003240 ORTHO05D017535 1.4e-06 57.8 136 37.5
BcaB02g07535 Brassica carinata HOM05D019895 ORTHO05D019895 1.8e-06 57.4 78 44.9
BcaC05g26508 Brassica carinata HOM05D003240 ORTHO05D023867 3.0e-06 56.6 89 43.8
BolC5t31284H Brassica oleracea HOM05D003240 ORTHO05D023867 3.0e-06 56.6 89 43.8
BolC9t53578H Brassica oleracea HOM05D011346 ORTHO05D043120 3.0e-06 56.6 77 46.8
BcaC08g47278 Brassica carinata HOM05D003240 ORTHO05D017535 4.0e-06 56.2 80 47.5
C03p29570 Brassica napus HOM05D047811 ORTHO05D013805 4.0e-06 56.2 106 46.2
C03p51870 Brassica napus HOM05D012445 ORTHO05D018631 4.0e-06 56.2 94 44.7
C04p03050 Brassica napus HOM05D011346 ORTHO05D015475 4.0e-06 56.2 77 46.8
C09p16440 Brassica napus HOM05D012445 ORTHO05D040835 4.0e-06 56.2 94 44.7
BolC4t21947H Brassica oleracea HOM05D011346 ORTHO05D015475 4.0e-06 56.2 77 46.8
BolC4t22353H Brassica oleracea HOM05D011346 ORTHO05D106028 4.0e-06 56.2 77 48.1
BcaC02g11825 Brassica carinata HOM05D017424 ORTHO05D094481 5.2e-06 55.8 73 42.5
C03p92080 Brassica napus HOM05D003240 ORTHO05D024027 5.2e-06 55.8 64 51.6
BcaC03g18230 Brassica carinata HOM05D003240 ORTHO05D024027 6.8e-06 55.5 64 51.6
C02p62990 Brassica napus HOM05D003240 ORTHO05D042544 6.8e-06 55.5 64 51.6
BolC2t12373H Brassica oleracea HOM05D003240 ORTHO05D042544 6.8e-06 55.5 64 51.6
BolC8t49585H Brassica oleracea HOM05D003240 ORTHO05D024027 6.8e-06 55.5 64 51.6
C05p62330 Brassica napus HOM05D003240 ORTHO05D019895 8.9e-06 55.1 105 39.0
C07p48040 Brassica napus HOM05D011346 ORTHO05D015475 8.9e-06 55.1 76 48.7


User provided reference genes

Program Settings