Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-118 429.9 219 100.0
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.2e-118 429.9 219 100.0
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 1.1e-100 370.2 219 88.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 3.0e-77 292.4 225 70.2
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 1.9e-76 289.7 224 70.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 4.3e-76 288.5 224 70.1
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.6e-75 286.6 225 69.8
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-74 283.5 225 68.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.4e-74 283.5 225 68.9
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.4e-74 283.5 225 68.9
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 3.1e-74 282.3 220 69.5
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 2.0e-73 279.6 217 70.5
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 9.9e-73 277.3 224 67.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 1.3e-72 276.9 224 67.0
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 1.0e-69 267.3 223 64.1
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 8.7e-69 264.2 213 68.1
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 3.3e-68 262.3 208 69.2
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 5.3e-66 255.0 217 63.6
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 9.6e-60 234.2 220 59.1
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 2.6e-57 226.1 226 57.1
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 2.6e-57 226.1 226 57.1
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 4.5e-57 225.3 223 57.0
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.1e-54 216.5 220 53.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 2.7e-54 216.1 223 52.9
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.7e-54 216.1 220 54.1
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 3.6e-54 215.7 226 54.0
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.6e-54 215.3 228 54.4
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.6e-54 215.3 228 54.4
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 4.6e-54 215.3 220 53.2
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.0e-53 214.2 210 55.7
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.0e-53 214.2 219 56.2
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.3e-53 213.8 223 52.0
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.3e-53 213.8 228 54.4
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.8e-53 213.4 214 54.7
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.8e-53 213.4 223 52.9
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 2.3e-53 213.0 222 55.4
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.7e-53 211.1 209 54.1
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 8.7e-53 211.1 209 54.1
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 8.7e-53 211.1 222 54.1
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.7e-53 211.1 236 51.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 8.7e-53 211.1 218 55.0
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.1e-52 210.7 213 54.9
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-52 210.3 228 53.5
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.9e-52 209.9 224 50.9
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 2.5e-52 209.5 218 55.0
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 4.3e-52 208.8 219 53.9
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 7.4e-52 208.0 214 55.6
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 2.8e-51 206.1 211 55.0
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.7e-51 205.7 224 50.4
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.7e-51 205.7 224 50.4
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 6.3e-51 204.9 214 55.1
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-50 204.1 226 53.1
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.1e-50 204.1 215 54.9
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.1e-50 204.1 215 53.0
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.4e-50 203.0 210 52.9
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 3.1e-50 202.6 222 50.5
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 3.1e-50 202.6 215 54.9
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.1e-50 202.6 228 51.8
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 6.9e-50 201.4 225 50.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.2e-49 200.7 220 53.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.5e-49 200.3 211 54.0
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.0e-49 199.9 221 52.0
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.6e-49 199.5 211 53.1
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.6e-49 199.5 202 55.9
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 3.4e-49 199.1 220 53.2
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.4e-49 199.1 211 53.6
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 5.9e-49 198.4 225 52.4
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 7.7e-49 198.0 215 52.6
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 7.7e-49 198.0 210 51.9
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 7.7e-49 198.0 211 51.7
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.0e-48 197.6 222 52.7
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.3e-48 197.2 224 51.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.3e-48 197.2 224 51.8
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.7e-48 196.8 214 50.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 2.2e-48 196.4 236 50.0
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.9e-48 196.1 211 50.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 2.9e-48 196.1 211 53.1
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 3.8e-48 195.7 215 54.4
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 5.0e-48 195.3 200 55.5
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 6.5e-48 194.9 230 50.4
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 8.5e-48 194.5 225 51.1
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 8.5e-48 194.5 211 52.6
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.1e-47 194.1 198 53.5
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.4e-47 193.7 211 51.2
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.9e-47 193.4 215 52.1
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.2e-47 192.6 214 49.5
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 7.2e-47 191.4 223 47.1
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 9.4e-47 191.0 223 49.3
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 9.4e-47 191.0 215 50.7
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.2e-46 190.7 220 49.5
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.6e-46 190.3 228 49.6
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 2.1e-46 189.9 211 51.7
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 2.7e-46 189.5 211 52.6
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.7e-46 189.5 208 51.4
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.6e-46 189.1 225 48.4
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.6e-46 189.1 226 48.7
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 6.1e-46 188.3 212 51.9
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 7.9e-46 188.0 221 49.3
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.9e-46 188.0 213 50.7
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.0e-45 187.6 217 50.2
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.0e-45 187.6 217 50.2
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.4e-45 187.2 213 49.3
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.8e-45 186.8 214 49.5
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 1.8e-45 186.8 197 53.8
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 3.9e-45 185.7 211 50.2
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 8.8e-45 184.5 250 45.6
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.1e-44 184.1 213 51.6
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.1e-44 184.1 201 50.7
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.1e-44 184.1 224 49.1
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.5e-44 183.7 213 49.8
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.5e-44 183.7 203 52.2
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.5e-44 183.7 215 48.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 2.6e-44 183.0 208 48.6
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 7.4e-44 181.4 206 50.0
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 9.7e-44 181.0 223 48.0
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.3e-43 180.6 200 53.0
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.3e-43 180.6 216 48.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 1.3e-43 180.6 229 45.4
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.2e-43 179.9 204 51.0
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 2.8e-43 179.5 217 48.8
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.8e-43 178.7 209 48.3
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 4.8e-43 178.7 218 49.1
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 4.8e-43 178.7 202 49.5
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 6.3e-43 178.3 198 48.5
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.2e-43 177.9 227 46.3
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.4e-42 177.2 181 53.6
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 3.1e-42 176.0 211 46.0
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 5.3e-42 175.3 204 48.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.0e-41 173.3 200 49.5
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 3.4e-41 172.6 217 47.5
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 7.7e-41 171.4 198 48.0
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.7e-40 170.2 196 47.4
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.7e-40 170.2 196 47.4
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.8e-40 169.1 188 51.6
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 6.5e-40 168.3 197 52.3
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 6.5e-40 168.3 191 46.6
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.4e-39 167.2 202 49.5
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 9.4e-39 164.5 181 50.3
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 4.7e-38 162.2 204 47.5
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.0e-37 161.0 207 46.4
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.7e-35 153.7 141 54.6
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 6.3e-35 151.8 209 45.5
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.1e-34 151.0 163 51.5
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.4e-34 149.8 169 50.3
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.1e-34 149.4 300 35.0
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 5.0e-32 142.1 118 57.6
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.5e-32 141.7 153 50.3
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.0e-30 134.8 124 57.3
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.0e-29 132.5 116 62.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 9.1e-26 121.3 145 51.7
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.2e-20 104.4 201 32.8
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.1e-18 97.8 190 34.2
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 9.5e-15 84.7 75 56.0
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 4.0e-13 79.3 67 56.7
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 3.1e-10 69.7 203 25.6
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 5.4e-10 68.9 60 65.0
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.2e-06 57.8 132 33.3
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 6.1e-06 55.5 121 31.4


User provided reference genes

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