Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-63 245.0 123 100.0
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 3.1e-63 245.0 123 100.0
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 3.1e-63 245.0 123 100.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 8.9e-63 243.4 123 99.2
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-62 243.0 123 98.4
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 6.4e-61 237.3 123 95.9
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-60 235.3 123 94.3
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-60 235.3 123 94.3
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.4e-60 235.3 124 96.0
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 4.1e-60 234.6 123 94.3
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 4.1e-60 234.6 123 94.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 7.1e-60 233.8 124 95.2
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-59 233.0 123 94.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 2.7e-59 231.9 124 94.4
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 3.5e-59 231.5 124 94.4
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.8e-59 230.3 123 93.5
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.0e-58 229.9 123 92.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.3e-58 228.8 123 91.9
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-58 228.8 124 91.9
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-58 228.8 124 93.5
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 91.9
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 93.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 91.9
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 3.0e-58 228.4 124 91.9
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 3.9e-58 228.0 123 91.9
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 6.6e-58 227.3 123 91.1
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-57 225.7 124 91.1
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 1.9e-57 225.7 124 91.1
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.3e-57 224.9 124 91.1
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.2e-48 194.1 124 80.6
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.0e-42 176.8 126 74.6
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-42 176.4 126 72.2
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.5e-41 172.9 126 73.0
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.3e-41 171.4 126 71.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.8e-40 167.9 126 70.6
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.8e-40 167.9 126 69.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.4e-30 135.2 132 59.1
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.1e-28 127.5 123 60.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 3.5e-27 125.2 127 58.3
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 5.9e-22 107.8 125 48.0
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.5e-21 104.4 122 50.0
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.9e-20 102.8 102 54.9
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 4.2e-20 101.7 125 51.2
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 5.5e-20 101.3 121 47.9
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 9.3e-20 100.5 121 47.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.2e-19 100.1 126 46.8
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 1.6e-19 99.8 121 47.1
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 2.1e-19 99.4 121 47.1
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.7e-19 99.0 134 47.8
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 6.1e-19 97.8 122 47.5
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.0e-18 97.1 122 47.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 1.8e-18 96.3 119 45.4
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 3.0e-18 95.5 124 48.4
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 3.0e-18 95.5 115 47.0
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 6.7e-18 94.4 115 47.8
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 6.7e-18 94.4 126 44.4
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.1e-17 93.6 123 47.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.1e-17 93.6 126 45.2
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.5e-17 93.2 122 46.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.5e-17 93.2 121 44.6
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.9e-17 92.8 122 45.9
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.5e-17 92.4 134 45.5
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 2.5e-17 92.4 136 47.1
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 2.5e-17 92.4 126 43.7
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 3.3e-17 92.0 132 43.2
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 3.3e-17 92.0 126 45.2
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 4.3e-17 91.7 137 43.8
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 5.7e-17 91.3 135 42.2
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 7.4e-17 90.9 126 46.0
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.4e-17 90.9 137 44.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 7.4e-17 90.9 137 44.5
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 9.7e-17 90.5 121 45.5
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.7e-16 89.7 117 45.3
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.7e-16 89.7 127 44.9
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.7e-16 89.7 126 42.9
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.7e-16 89.7 126 44.4
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 2.8e-16 89.0 123 44.7
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 3.7e-16 88.6 126 42.9
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.8e-16 88.2 140 43.6
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 8.2e-16 87.4 128 43.0
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 8.2e-16 87.4 94 47.9
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.1e-15 87.0 133 45.9
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 1.4e-15 86.7 127 47.2
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.8e-15 86.3 125 42.4
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.4e-15 85.9 129 45.7
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 3.1e-15 85.5 119 45.4
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.1e-15 85.5 125 42.4
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 3.1e-15 85.5 117 43.6
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.1e-15 85.1 142 40.1
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 5.3e-15 84.7 133 40.6
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 9.1e-15 84.0 125 44.8
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-14 83.2 128 42.2
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.5e-14 83.2 135 40.7
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.5e-14 83.2 133 42.1
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 2.0e-14 82.8 131 46.6
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 4.5e-14 81.6 126 43.7
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.5e-14 81.6 119 42.9
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 5.9e-14 81.3 129 41.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 5.9e-14 81.3 129 41.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 5.9e-14 81.3 129 41.9
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.3e-13 80.1 131 39.7
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.3e-13 80.1 129 44.2
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.2e-13 79.3 131 39.7
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 5.0e-13 78.2 130 40.0
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 5.0e-13 78.2 130 40.0
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.5e-13 77.8 129 38.0
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 8.5e-13 77.4 119 42.9
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.1e-12 77.0 63 57.1
AT2G18200 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.4e-12 76.6 81 55.6
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-12 76.6 128 36.7
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.4e-12 76.6 131 38.9
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.4e-12 76.6 121 43.0
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.9e-12 76.3 135 41.5
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.9e-12 76.3 131 39.7
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 3.2e-12 75.5 131 38.9
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 4.2e-12 75.1 125 42.4
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 5.5e-12 74.7 131 40.5
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 7.2e-12 74.3 130 40.0
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-11 73.2 123 40.7
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-11 73.2 123 40.7
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.1e-11 72.8 127 42.5
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.7e-11 72.4 95 44.2
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 3.6e-11 72.0 131 39.7
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 4.7e-11 71.6 130 35.4
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.7e-11 71.6 130 35.4
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.7e-11 71.6 130 35.4
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.9e-11 70.9 112 40.2
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 7.9e-11 70.9 112 40.2
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.0e-10 70.5 144 36.8
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.0e-10 68.9 129 38.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 3.0e-10 68.9 124 36.3
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.1e-10 68.2 129 36.4
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 5.1e-10 68.2 125 37.6
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.1e-09 67.0 130 37.7
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.0e-09 66.2 130 33.8
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.0e-09 66.2 124 39.5
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.3e-09 65.5 120 38.3
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 5.7e-09 64.7 114 34.2
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 7.4e-09 64.3 112 44.6
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 9.7e-09 63.9 127 35.4
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-08 63.5 127 35.4
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.3e-08 63.5 122 39.3
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.7e-08 63.2 119 33.6
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.7e-08 63.2 120 38.3
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.7e-08 63.2 48 56.2
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.8e-08 62.4 129 34.1
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 2.8e-08 62.4 100 39.0
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 2.8e-08 62.4 127 40.2
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 3.7e-08 62.0 122 36.9
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.7e-08 62.0 123 37.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 3.7e-08 62.0 117 36.8
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 4.8e-08 61.6 112 36.6
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.8e-08 61.6 121 36.4
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 8.2e-08 60.8 121 37.2
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-07 60.5 137 34.3
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-07 60.1 37 67.6
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-07 58.9 37 64.9
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 3.1e-07 58.9 114 37.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 7.0e-07 57.8 113 37.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 7.0e-07 57.8 113 38.1
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 7.0e-07 57.8 113 38.9
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 9.1e-07 57.4 110 40.0
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 9.1e-07 57.4 115 38.3
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 9.1e-07 57.4 92 39.1
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 9.1e-07 57.4 81 42.0
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-06 57.0 113 38.1
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.2e-06 57.0 112 39.3
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.2e-06 57.0 113 38.1
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 2.6e-06 55.8 113 37.2
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 2.6e-06 55.8 48 47.9
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 3.4e-06 55.5 46 47.8
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 5.9e-06 54.7 63 38.1
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 5.9e-06 54.7 109 35.8
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 7.7e-06 54.3 102 39.2
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 7.7e-06 54.3 116 34.5
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 7.7e-06 54.3 116 34.5


User provided reference genes

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