Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 0.0e+00 1142.1 633 100.0
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 0.0e+00 1114.8 634 97.8
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 0.0e+00 1100.1 630 96.2
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 5.8e-299 1030.4 661 89.6
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 1.1e-294 1016.1 639 91.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 2.8e-285 984.9 653 85.6
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 1.1e-260 903.3 665 79.4
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 2.9e-250 868.6 655 76.5
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 1.4e-239 833.2 662 73.3
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.4e-239 833.2 660 73.3
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 5.3e-236 821.2 658 73.1
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 2.2e-226 789.3 655 70.5
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 1.5e-209 733.4 656 66.6
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 1.8e-199 699.9 662 62.2
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 5.7e-145 518.8 654 52.8
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 7.4e-145 518.5 657 51.9
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.2e-144 516.9 666 52.1
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 4.8e-144 515.8 685 52.0
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 6.9e-143 511.9 693 50.2
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 7.7e-142 508.4 693 50.1
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.5e-137 494.2 663 49.3
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 3.3e-137 493.0 689 50.4
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 9.7e-137 491.5 657 49.6
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 3.4e-134 483.0 645 50.2
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.3e-133 481.1 647 49.9
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 4.2e-132 476.1 728 46.7
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 5.2e-130 469.2 667 47.2
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 1.1e-129 468.0 696 46.0
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 7.4e-129 465.3 455 61.1
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 9.7e-129 464.9 585 51.3
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 4.8e-128 462.6 672 47.9
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 3.5e-126 456.4 667 47.2
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 5.9e-126 455.7 674 47.5
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 4.2e-124 449.5 417 60.9
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 3.6e-123 446.4 682 44.7
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 4.7e-123 446.0 684 46.9
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.0e-122 444.9 646 48.0
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.8e-122 444.1 663 48.1
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 4.0e-122 443.0 671 46.3
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 4.0e-122 443.0 659 45.4
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 5.2e-122 442.6 666 46.1
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 5.2e-122 442.6 664 44.9
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 4.1e-119 433.0 677 46.4
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 2.7e-118 430.3 650 45.5
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.7e-118 430.3 701 45.4
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 7.7e-118 428.7 677 44.0
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 5.0e-117 426.0 600 45.8
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 1.1e-116 424.9 672 44.9
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.5e-116 422.5 687 44.0
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.0e-114 418.3 656 44.2
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 1.4e-114 417.9 392 61.0
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 1.4e-114 417.9 338 67.2
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 1.4e-114 417.9 688 43.6
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.0e-114 416.8 728 43.3
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 4.0e-114 416.4 636 46.1
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 6.8e-114 415.6 668 45.8
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 4.4e-113 412.9 660 44.5
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 7.5e-113 412.1 662 44.1
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.3e-112 411.4 674 44.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.8e-112 410.2 686 42.9
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 8.3e-112 408.7 662 45.5
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 2.4e-111 407.1 665 44.7
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 2.4e-111 407.1 503 50.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 1.2e-110 404.8 338 66.3
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 3.5e-110 403.3 676 44.5
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.3e-109 401.4 671 43.2
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.5e-108 397.9 660 44.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.5e-108 397.9 670 43.3
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.2e-108 396.7 400 57.0
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.2e-107 394.8 668 44.3
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 1.6e-107 394.4 669 42.9
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 2.7e-107 393.7 645 43.3
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 4.7e-107 392.9 685 42.6
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 6.1e-107 392.5 642 43.8
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.0e-106 391.7 673 43.2
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.4e-106 391.3 669 43.0
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 3.0e-106 390.2 593 45.9
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 6.8e-106 389.0 691 42.0
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 8.8e-106 388.7 621 45.2
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.4e-103 381.3 618 44.2
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 4.1e-103 379.8 660 41.8
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 5.4e-103 379.4 588 45.1
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 7.0e-103 379.0 659 44.0
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 1.6e-102 377.9 380 59.2
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 4.5e-102 376.3 664 42.3
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.7e-102 375.6 667 43.8
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.8e-101 373.2 587 45.3
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.8e-101 373.2 587 45.3
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.4e-98 364.8 685 42.3
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 2.6e-97 360.5 662 42.4
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 4.4e-97 359.8 448 52.2
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 3.2e-95 353.6 355 58.0
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 5.4e-95 352.8 608 41.3
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 4.6e-94 349.7 404 52.7
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.3e-93 347.4 588 43.4
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 7.3e-92 342.4 630 42.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.9e-88 330.5 663 39.5
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 3.2e-87 327.0 432 47.9
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 7.8e-86 322.4 467 47.3
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 2.3e-82 310.8 669 38.1
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 7.8e-78 295.8 649 38.1
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 2.8e-75 287.3 485 42.9
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.0e-73 281.2 669 35.4
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 1.7e-69 268.1 271 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.6e-59 235.0 315 44.1
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 1.2e-57 228.8 225 63.1
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.6e-54 218.4 326 45.7
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.9e-52 211.5 370 40.8
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 4.8e-51 206.8 217 55.8
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 4.0e-50 203.8 317 40.4
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 5.8e-49 199.9 193 60.1
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.3e-48 198.7 512 31.2
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 2.9e-48 197.6 545 33.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 1.3e-45 188.7 329 35.9
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 3.7e-43 180.6 111 84.7
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 4.0e-42 177.2 124 70.2
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 9.0e-42 176.0 112 83.9
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 4.5e-41 173.7 441 35.1
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 8.7e-37 159.5 113 74.3
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.3e-35 155.6 112 69.6
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 8.2e-35 152.9 118 65.3
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 5.3e-34 150.2 118 63.6
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 5.9e-33 146.7 90 83.3
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 2.8e-27 127.9 440 32.3
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 2.4e-26 124.8 88 72.7
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 8.5e-24 116.3 215 36.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.2e-23 114.0 107 54.2
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 4.2e-23 114.0 450 30.2
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 2.1e-22 111.7 519 26.8
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 4.6e-22 110.5 87 66.7
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 1.0e-21 109.4 141 46.8
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.4e-21 109.0 93 64.5
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 9.7e-20 102.8 140 45.7
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 1.3e-19 102.4 141 45.4
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 5.2e-13 80.5 60 81.7
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.7e-08 65.5 347 28.5


User provided reference genes

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