Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00295 Brassica carinata HOM05D000812 ORTHO05D012268 2.6e-36 154.8 78 100.0
C03p77990 Brassica napus HOM05D000812 ORTHO05D012268 1.0e-32 142.9 72 100.0
C01p20910 Brassica napus HOM05D000812 ORTHO05D012268 1.2e-31 139.4 78 89.7
BolC1t02018H Brassica oleracea HOM05D000812 ORTHO05D012268 1.3e-30 136.0 78 87.2
BcaC09g50781 Brassica carinata HOM05D000812 ORTHO05D012268 2.8e-30 134.8 78 87.2
BolC3t20060H Brassica oleracea HOM05D000812 ORTHO05D012268 2.4e-29 131.7 85 82.4
BolC8t47212H Brassica oleracea HOM05D000812 ORTHO05D012268 1.2e-28 129.4 85 81.2
A04p26940 Brassica napus HOM05D000812 ORTHO05D000672 2.7e-28 128.3 78 83.3
C04p64330 Brassica napus HOM05D000812 ORTHO05D000672 2.7e-28 128.3 78 83.3
BraA04t18193Z Brassica rapa HOM05D000812 ORTHO05D000672 2.7e-28 128.3 78 83.3
BolC4t27920H Brassica oleracea HOM05D000812 ORTHO05D000672 5.9e-28 127.1 78 82.1
BcaC02g07707 Brassica carinata HOM05D000812 ORTHO05D000672 7.7e-28 126.7 78 84.6
BolC2t11173H Brassica oleracea HOM05D000812 ORTHO05D012268 7.2e-26 120.2 78 82.1
BcaC09g49365 Brassica carinata HOM05D000812 ORTHO05D012268 4.0e-24 114.4 81 79.0
C02p50860 Brassica napus HOM05D000812 ORTHO05D012268 3.4e-23 111.3 85 74.1
BcaC03g16338 Brassica carinata HOM05D000812 ORTHO05D012268 8.3e-22 106.7 78 76.9
C02p41630 Brassica napus HOM05D000812 ORTHO05D012268 8.3e-22 106.7 78 76.9
Sp4g17730 Schrenkiella parvula HOM05D000812 ORTHO05D000672 4.5e-20 100.9 75 70.7
Thhalv10016444m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 1.3e-19 99.4 74 71.6
BcaB06g28846 Brassica carinata HOM05D000812 ORTHO05D000672 5.0e-19 97.4 79 68.4
BcaC03g17163 Brassica carinata HOM05D000812 ORTHO05D012268 1.2e-17 92.8 78 71.8
A05p10220 Brassica napus HOM05D000812 ORTHO05D000672 3.6e-17 91.3 76 65.8
BcaC02g11656 Brassica carinata HOM05D000812 ORTHO05D000672 8.0e-17 90.1 76 63.2
C04p12670 Brassica napus HOM05D000812 ORTHO05D000672 8.0e-17 90.1 76 63.2
BraA05t19962Z Brassica rapa HOM05D000812 ORTHO05D000672 5.2e-16 87.4 73 65.8
BolC4t22915H Brassica oleracea HOM05D000812 ORTHO05D000672 2.6e-15 85.1 74 62.2
AL4G31560 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 2.9e-11 71.6 62 61.3
AT2G35510 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 3.3e-10 68.2 62 61.3
CARHR129660 Cardamine hirsuta HOM05D000812 ORTHO05D012268 7.3e-10 67.0 62 58.1
Aa31LG9G15500 Aethionema arabicum HOM05D000812 ORTHO05D000672 9.5e-10 66.6 73 53.4
Carub.0004s1720 Capsella rubella HOM05D000812 ORTHO05D000672 9.5e-10 66.6 62 59.7
C03p33210 Brassica napus HOM05D000812 ORTHO05D012268 3.6e-09 64.7 38 86.8
Potri.001G137200 Populus trichocarpa HOM05D000812 ORTHO05D000672 1.8e-08 62.4 61 57.4
Thhalv10007192m.g Eutrema salsugineum HOM05D000812 ORTHO05D000672 2.3e-08 62.0 61 59.0
THA.LOC104798492 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 8.9e-08 60.1 61 57.4
THA.LOC104814416 Tarenaya hassleriana HOM05D000812 ORTHO05D000672 1.2e-07 59.7 61 57.4
C05p31640 Brassica napus HOM05D000812 ORTHO05D000672 1.5e-07 59.3 71 53.5
Peaxi162Scf00170g00626 Petunia axillaris HOM05D000812 ORTHO05D000672 1.5e-07 59.3 77 46.8
Potri.003G096700 Populus trichocarpa HOM05D000812 ORTHO05D000672 1.5e-07 59.3 61 54.1
TAR375G0763 Trochodendron aralioides HOM05D000812 ORTHO05D000672 1.5e-07 59.3 61 52.5
BcaC05g27256 Brassica carinata HOM05D000812 ORTHO05D000672 2.0e-07 58.9 61 57.4
BolC5t31889H Brassica oleracea HOM05D000812 ORTHO05D000672 2.0e-07 58.9 61 57.4
Dinv25257 Davidia involucrata HOM05D000812 ORTHO05D000672 2.0e-07 58.9 61 50.8
Aa31LG2G13770 Aethionema arabicum HOM05D000812 ORTHO05D000672 2.6e-07 58.5 61 52.5
COL.COLO4_16946 Corchorus olitorius HOM05D000812 ORTHO05D000672 2.6e-07 58.5 71 47.9
A09p33940 Brassica napus HOM05D000812 ORTHO05D000672 3.4e-07 58.2 69 50.7
FAN04G2405 Fragaria x ananassa HOM05D000812 ORTHO05D000672 3.4e-07 58.2 77 41.6
AL1G46370 Arabidopsis lyrata HOM05D000812 ORTHO05D000672 4.4e-07 57.8 61 52.5
BcaC05g27903 Brassica carinata HOM05D000812 ORTHO05D000672 4.4e-07 57.8 59 57.6
C05p39110 Brassica napus HOM05D000812 ORTHO05D000672 4.4e-07 57.8 59 57.6
BolC5t32647H Brassica oleracea HOM05D000812 ORTHO05D000672 4.4e-07 57.8 59 57.6
Cpa.g.sc208.10 Carica papaya HOM05D000812 ORTHO05D000672 4.4e-07 57.8 61 52.5
Duzib205G1904 Durio zibethinus HOM05D000812 ORTHO05D000672 4.4e-07 57.8 61 49.2
Sp1g27910 Schrenkiella parvula HOM05D000812 ORTHO05D000672 4.4e-07 57.8 61 55.7
GSVIVG01013090001 Vitis vinifera HOM05D000812 ORTHO05D000672 4.4e-07 57.8 65 50.8
Atru.chr6.1521 Acer truncatum HOM05D000812 ORTHO05D000672 5.8e-07 57.4 71 45.1
BraA09t38941Z Brassica rapa HOM05D000812 ORTHO05D000672 5.8e-07 57.4 61 55.7
CAN.G726.21 Capsicum annuum HOM05D000812 ORTHO05D000672 5.8e-07 57.4 58 55.2
HPP92_020899 Vanilla planifolia HOM05D000812 ORTHO05D000672 5.8e-07 57.4 72 38.9
FAN04G2983 Fragaria x ananassa HOM05D000812 ORTHO05D000672 9.8e-07 56.6 61 49.2
FAN08G0340 Fragaria x ananassa HOM05D000812 ORTHO05D000672 9.8e-07 56.6 61 49.2
Nitab4.5_0000556g0260 Nicotiana tabacum HOM05D000812 ORTHO05D000672 9.8e-07 56.6 74 41.9
AT1G32230 Arabidopsis thaliana HOM05D000812 ORTHO05D000672 1.3e-06 56.2 61 50.8
Ciclev10001062m.g Citrus clementina HOM05D000812 ORTHO05D000672 1.3e-06 56.2 61 49.2
FAN13G2070 Fragaria x ananassa HOM05D000812 ORTHO05D000672 1.3e-06 56.2 62 48.4
Lj2g0005786 Lotus japonicus HOM05D000812 ORTHO05D000672 1.3e-06 56.2 61 49.2
BcaB03g13750 Brassica carinata HOM05D000812 ORTHO05D000672 1.7e-06 55.8 83 43.4
Solyc08g076420.3 Solanum lycopersicum HOM05D000812 ORTHO05D000672 1.7e-06 55.8 58 51.7
Sopen08g025000 Solanum pennellii HOM05D000812 ORTHO05D000672 1.7e-06 55.8 58 51.7
PGSC0003DMG400014804 Solanum tuberosum HOM05D000812 ORTHO05D000672 1.7e-06 55.8 58 51.7
CARHR031600 Cardamine hirsuta HOM05D000812 ORTHO05D000672 2.2e-06 55.5 61 54.1
Nitab4.5_0002190g0010 Nicotiana tabacum HOM05D000812 ORTHO05D000672 2.2e-06 55.5 58 50.0
SalBow6G5846 Salvia bowleyana HOM05D000812 ORTHO05D000672 2.2e-06 55.5 61 50.8
Actinidia14780 Actinidia chinensis HOM05D000812 ORTHO05D000672 2.9e-06 55.1 61 47.5
Carub.0001s3056 Capsella rubella HOM05D000812 ORTHO05D000672 2.9e-06 55.1 61 52.5
Dinv29001 Davidia involucrata HOM05D000812 ORTHO05D000672 2.9e-06 55.1 61 45.9
FAN13G1341 Fragaria x ananassa HOM05D000812 ORTHO05D000672 2.9e-06 55.1 61 49.2
BcaB07g32898 Brassica carinata HOM05D000812 ORTHO05D000672 3.7e-06 54.7 61 54.1
Gohir.A12G206300 Gossypium hirsutum HOM05D000812 ORTHO05D000672 3.7e-06 54.7 61 49.2
Gohir.D12G208700 Gossypium hirsutum HOM05D000812 ORTHO05D000672 3.7e-06 54.7 61 49.2
Peaxi162Scf00045g00222 Petunia axillaris HOM05D000812 ORTHO05D000672 3.7e-06 54.7 61 45.9
Sc06g0000670 Simmondsia chinensis HOM05D000812 ORTHO05D000672 3.7e-06 54.7 61 47.5
SGA_v2.0_scaffold198G41075 Striga asiatica HOM05D000812 ORTHO05D000672 3.7e-06 54.7 61 47.5
Actinidia18134 Actinidia chinensis HOM05D000812 ORTHO05D000672 4.9e-06 54.3 61 47.5
MSTRG.24847 Avicennia marina HOM05D000812 ORTHO05D000672 4.9e-06 54.3 62 45.2
FvH4_5g23020 Fragaria vesca HOM05D000812 ORTHO05D000672 4.9e-06 54.3 61 47.5
FAN18G3293 Fragaria x ananassa HOM05D000812 ORTHO05D000672 4.9e-06 54.3 61 47.5
FAN18G4384 Fragaria x ananassa HOM05D000812 ORTHO05D000672 4.9e-06 54.3 61 47.5
MBI04_g44376_MAGBIO Magnolia biondii HOM05D000812 ORTHO05D000672 4.9e-06 54.3 77 37.7
Nitab4.5_0002778g0090 Nicotiana tabacum HOM05D000812 ORTHO05D000672 4.9e-06 54.3 61 45.9
HPP92_014847 Vanilla planifolia HOM05D000812 ORTHO05D000672 4.9e-06 54.3 63 41.3
Gorai.008G224200 Gossypium raimondii HOM05D000812 ORTHO05D000672 6.4e-06 53.9 61 49.2
Oeu027086.1 Olea europaea HOM05D000812 ORTHO05D000672 6.4e-06 53.9 71 42.3
CANSAT01G0262 Cannabis sativa HOM05D000812 ORTHO05D000672 8.3e-06 53.5 61 49.2
PGR031G1634 Punica granatum HOM05D000812 ORTHO05D000672 8.3e-06 53.5 71 43.7
GSVIVG01013086001 Vitis vinifera HOM05D000812 ORTHO05D000672 8.3e-06 53.5 58 51.7


User provided reference genes

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