Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00256 Brassica carinata HOM05D004157 ORTHO05D004860 1.7e-143 512.7 262 100.0
BolC3t19986H Brassica oleracea HOM05D004157 ORTHO05D004860 1.3e-140 503.1 276 94.9
A08p24000 Brassica napus HOM05D004157 ORTHO05D004860 2.5e-139 498.8 263 98.5
BraA08t34357Z Brassica rapa HOM05D004157 ORTHO05D004860 3.3e-139 498.4 276 94.6
C03p77330 Brassica napus HOM05D004157 ORTHO05D004860 9.5e-139 496.9 263 98.1
BcaB03g12226 Brassica carinata HOM05D004157 ORTHO05D004860 1.2e-138 496.5 262 96.2
Thhalv10025990m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 9.6e-131 470.3 267 91.0
CARHR247930 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.2e-130 469.9 267 89.5
AL7G10670 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 9.0e-129 463.8 267 89.9
AT4G38800 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 3.8e-127 458.4 268 88.1
Carub.0007s0065 Capsella rubella HOM05D004157 ORTHO05D004860 9.3e-126 453.8 265 87.2
THA.LOC104807783 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 4.8e-122 441.4 262 84.4
Aa31LG6G16410 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.2e-122 441.0 301 77.1
Sp7g37020 Schrenkiella parvula HOM05D004157 ORTHO05D004860 7.6e-112 407.5 264 84.1
Potri.004G167200 Populus trichocarpa HOM05D004157 ORTHO05D004860 3.8e-103 378.6 264 70.5
Sabra09G0098500 Salix brachista HOM05D004157 ORTHO05D004860 1.4e-102 376.7 264 68.9
Hma1.2p1_1385F.1_g279670 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 9.3e-102 374.0 263 69.6
Eucgr.G01748 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.7e-101 372.5 266 68.0
EL10Ac9g21458 Beta vulgaris HOM05D004157 ORTHO05D004860 3.9e-100 368.6 266 69.9
MD10G1116600 Malus domestica HOM05D004157 ORTHO05D004860 6.7e-100 367.9 266 68.8
Cc02_g16620 Coffea canephora HOM05D004157 ORTHO05D004860 1.1e-99 367.1 266 68.4
TWI79G0156 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.3e-99 365.5 266 66.9
Migut.I00211 Erythranthe guttata HOM05D004157 ORTHO05D004860 4.3e-99 365.2 262 67.9
PGR042G1356 Punica granatum HOM05D004157 ORTHO05D004860 4.3e-99 365.2 266 68.8
Prupe.8G159400 Prunus persica HOM05D004157 ORTHO05D004860 5.7e-99 364.8 266 68.0
TAR381G0601 Trochodendron aralioides HOM05D004157 ORTHO05D004860 9.7e-99 364.0 267 67.0
MSTRG.5432 Avicennia marina HOM05D004157 ORTHO05D004860 2.2e-98 362.8 262 67.9
Cfa005173 Carpinus fangiana HOM05D004157 ORTHO05D004860 2.2e-98 362.8 257 69.3
FAN24G0875 Fragaria x ananassa HOM05D004157 ORTHO05D004860 2.2e-98 362.8 266 67.3
FvH4_2g02150 Fragaria vesca HOM05D004157 ORTHO05D004860 2.8e-98 362.5 266 67.3
QL11p047455 Quercus lobata HOM05D004157 ORTHO05D004860 3.7e-98 362.1 263 67.7
TWI75G1232 Tripterygium wilfordii HOM05D004157 ORTHO05D004860 3.7e-98 362.1 251 69.3
PGR142G1140 Punica granatum HOM05D004157 ORTHO05D004860 4.8e-98 361.7 264 67.4
Actinidia32087 Actinidia chinensis HOM05D004157 ORTHO05D004860 8.2e-98 360.9 246 71.5
CANSAT25G0852 Cannabis sativa HOM05D004157 ORTHO05D004860 8.2e-98 360.9 266 66.9
vmacro22690 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 8.2e-98 360.9 260 69.2
FAN20G1131 Fragaria x ananassa HOM05D004157 ORTHO05D004860 1.1e-97 360.5 266 67.3
Thhalv10026821m.g Eutrema salsugineum HOM05D004157 ORTHO05D004860 1.8e-97 359.8 267 64.8
Gohir.A03G202800 Gossypium hirsutum HOM05D004157 ORTHO05D004860 2.4e-97 359.4 266 67.7
SGA_v2.0_scaffold80G25867 Striga asiatica HOM05D004157 ORTHO05D004860 2.4e-97 359.4 237 75.9
GSVIVG01024109001 Vitis vinifera HOM05D004157 ORTHO05D004860 2.4e-97 359.4 266 66.5
Gorai.005G251900 Gossypium raimondii HOM05D004157 ORTHO05D004860 5.3e-97 358.2 266 67.3
Sc18g0006720 Simmondsia chinensis HOM05D004157 ORTHO05D004860 9.0e-97 357.5 260 68.5
TPR.G38481 Trifolium pratense HOM05D004157 ORTHO05D004860 9.0e-97 357.5 250 68.4
Lj1g0011325 Lotus japonicus HOM05D004157 ORTHO05D004860 2.0e-96 356.3 253 67.6
RcHm_v2.0_Chr6g0245651 Rosa chinensis HOM05D004157 ORTHO05D004860 2.0e-96 356.3 266 65.8
Aqoxy5G01458 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 2.6e-96 355.9 267 65.5
Peaxi162Scf00362g01054 Petunia axillaris HOM05D004157 ORTHO05D004860 2.6e-96 355.9 263 68.1
Solyc01g111060.4 Solanum lycopersicum HOM05D004157 ORTHO05D004860 3.4e-96 355.5 267 64.8
Sopen01g053120 Solanum pennellii HOM05D004157 ORTHO05D004860 3.4e-96 355.5 267 64.8
Thecc.02G068100 Theobroma cacao HOM05D004157 ORTHO05D004860 3.4e-96 355.5 266 66.5
Phvul.009G000600 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 4.5e-96 355.1 245 69.4
PGSC0003DMG400001636 Solanum tuberosum HOM05D004157 ORTHO05D004860 4.5e-96 355.1 267 65.5
Gohir.D02G224100 Gossypium hirsutum HOM05D004157 ORTHO05D004860 5.9e-96 354.8 266 66.9
PSO541G4423 Papaver somniferum HOM05D004157 ORTHO05D004860 1.0e-95 354.0 267 65.9
Psat5g003520 Pisum sativum HOM05D004157 ORTHO05D004860 1.0e-95 354.0 248 68.5
Glyma.06G005600 Glycine max HOM05D004157 ORTHO05D004860 1.3e-95 353.6 248 67.7
Glyma.04G005900 Glycine max HOM05D004157 ORTHO05D004860 2.2e-95 352.8 245 69.4
Nn5g30153 Nelumbo nucifera HOM05D004157 ORTHO05D004860 2.9e-95 352.4 268 65.3
PSO675G3214 Papaver somniferum HOM05D004157 ORTHO05D004860 2.9e-95 352.4 267 65.5
Lalb_Chr11g0061251 Lupinus albus HOM05D004157 ORTHO05D004860 3.8e-95 352.1 249 67.1
Atru.chr5.3210 Acer truncatum HOM05D004157 ORTHO05D004860 8.5e-95 350.9 248 69.8
Nitab4.5_0000283g0220 Nicotiana tabacum HOM05D004157 ORTHO05D004860 8.5e-95 350.9 258 69.0
VMungo1309G1201 Vigna mungo HOM05D004157 ORTHO05D004860 8.5e-95 350.9 249 67.1
Actinidia00586 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.1e-94 350.5 251 71.7
Ah.01g009470 Amaranthus hybridus HOM05D004157 ORTHO05D004860 2.5e-94 349.4 287 64.5
CiPaw.06G125600 Carya illinoinensis HOM05D000447 ORTHO05D000315 5.5e-94 348.2 249 67.1
Eucgr.G01749 Eucalyptus grandis HOM05D004157 ORTHO05D004860 5.5e-94 348.2 268 66.0
Sp7g32610 Schrenkiella parvula HOM05D004157 ORTHO05D004860 9.4e-94 347.4 256 64.8
Medtr3g117700 Medicago truncatula HOM05D004157 ORTHO05D004860 1.2e-93 347.1 255 65.5
HPP92_002547 Vanilla planifolia HOM05D004157 ORTHO05D004860 1.2e-93 347.1 251 67.3
MELO3C013382.2 Cucumis melo HOM05D004157 ORTHO05D004860 2.1e-93 346.3 247 67.2
CsaV3_7G000760 Cucumis sativus L. HOM05D004157 ORTHO05D004860 4.6e-93 345.1 247 67.6
Manes.04G078800 Manihot esculenta HOM05D004157 ORTHO05D004860 4.6e-93 345.1 228 72.8
Aa31LG2G15700 Aethionema arabicum HOM05D004157 ORTHO05D004860 6.1e-93 344.7 267 62.2
COL.COLO4_17245 Corchorus olitorius HOM05D004157 ORTHO05D004860 1.0e-92 344.0 303 59.4
A08p16520 Brassica napus HOM05D004157 ORTHO05D004860 1.4e-92 343.6 267 62.5
BcaC01g00866 Brassica carinata HOM05D004157 ORTHO05D004860 3.0e-92 342.4 246 65.9
HanXRQChr10g0294891 Helianthus annuus HOM05D004157 ORTHO05D004860 3.9e-92 342.0 250 65.2
AL7G16370 Arabidopsis lyrata HOM05D004157 ORTHO05D004860 5.1e-92 341.7 246 65.9
arahy.Tifrunner.gnm1.ann1.66CLCN Arachis hypogaea HOM05D004157 ORTHO05D004860 5.1e-92 341.7 258 64.3
Carub.0007s0546 Capsella rubella HOM05D004157 ORTHO05D004860 5.1e-92 341.7 248 64.5
Sed0001494 Sechium edule HOM05D000447 ORTHO05D000315 6.7e-92 341.3 229 71.2
unitig_0.g2353 Utricularia gibba HOM05D004157 ORTHO05D004860 6.7e-92 341.3 245 66.1
Ca_15317_v3 Cicer arietinum L. HOM05D000600 ORTHO05D004860 8.8e-92 340.9 235 69.4
Lsat_1_v5_gn_3_45521 Lactuca sativa HOM05D004157 ORTHO05D004860 8.8e-92 340.9 249 67.1
ECA234G4736 Erigeron canadensis HOM05D004157 ORTHO05D004860 1.1e-91 340.5 262 63.4
arahy.Tifrunner.gnm1.ann1.391TM2 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.5e-91 340.1 247 66.4
CARHR243130 Cardamine hirsuta HOM05D004157 ORTHO05D004860 1.5e-91 340.1 246 66.3
THA.LOC104819635 Tarenaya hassleriana HOM05D004157 ORTHO05D004860 2.0e-91 339.7 244 65.6
DCAR_028937 Daucus carota HOM05D004157 ORTHO05D004860 2.5e-91 339.3 247 66.4
Oeu055643.1 Olea europaea HOM05D004157 ORTHO05D004860 2.5e-91 339.3 234 71.8
C03p85360 Brassica napus HOM05D004157 ORTHO05D004860 3.3e-91 339.0 246 65.4
BcaB03g11807 Brassica carinata HOM05D004157 ORTHO05D004860 4.3e-91 338.6 246 64.6
unitig_21.g20017 Utricularia gibba HOM05D004157 ORTHO05D004860 5.7e-91 338.2 253 66.0
BolC3t20826H Brassica oleracea HOM05D004157 ORTHO05D004860 1.3e-90 337.0 246 65.0
CAN.G588.18 Capsicum annuum HOM05D004157 ORTHO05D004860 2.2e-90 336.3 234 70.1
AUR62010110 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.2e-90 336.3 334 56.6
VMungo1309G1253 Vigna mungo HOM05D004157 ORTHO05D004860 3.7e-90 335.5 245 65.7
Lj5A185T60 Lonicera japonica HOM05D004157 ORTHO05D004860 4.8e-90 335.1 247 66.8
vmacro17385 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.8e-90 335.1 261 64.4
Os06g0112200 Oryza sativa ssp. japonica HOM05D004157 ORTHO05D004860 1.8e-89 333.2 243 65.4
PSO675G5417 Papaver somniferum HOM05D004157 ORTHO05D004860 2.4e-89 332.8 265 63.8
ClCG02G004360 Citrullus lanatus HOM05D000447 ORTHO05D000315 4.1e-89 332.0 236 66.9
vmacro02241 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 2.0e-88 329.7 267 62.5
DCAR_003693 Daucus carota HOM05D004157 ORTHO05D004860 3.4e-88 328.9 346 51.7
PSO541G6022 Papaver somniferum HOM05D004157 ORTHO05D004860 4.5e-88 328.6 264 63.3
Aqoxy2G00577 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 5.9e-88 328.2 251 62.9
Zm00001eb036610 Zea mays HOM05D004157 ORTHO05D004860 1.0e-87 327.4 246 65.9
Sed0017382 Sechium edule HOM05D004157 ORTHO05D004860 2.9e-87 325.9 228 68.4
Hund00051 Selenicereus undatus HOM05D004157 ORTHO05D004860 5.0e-87 325.1 211 74.4
Glyma.06G005700 Glycine max HOM05D004157 ORTHO05D004860 1.1e-86 323.9 245 64.5
Phvul.009G000700 Phaseolus vulgaris HOM05D004157 ORTHO05D004860 2.5e-86 322.8 263 60.5
Lj9A389T64 Lonicera japonica HOM05D004157 ORTHO05D004860 9.4e-86 320.9 218 70.6
Zm00001eb175180 Zea mays HOM05D004157 ORTHO05D004860 1.2e-85 320.5 246 65.0
Oeu002957.1 Olea europaea HOM05D004157 ORTHO05D004860 2.0e-83 313.2 211 73.0
ATR0089G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 4.4e-83 312.0 211 71.1
ATR0095G001 Amborella trichopoda HOM05D004157 ORTHO05D004860 2.2e-82 309.7 211 70.6
Duzib132G0743 Durio zibethinus HOM05D004157 ORTHO05D004860 6.3e-82 308.1 266 60.5
HanXRQChr11g0346651 Helianthus annuus HOM05D004157 ORTHO05D004860 7.0e-81 304.7 248 60.9
SGA_v2.0_scaffold32G13240 Striga asiatica HOM05D004157 ORTHO05D004860 9.1e-81 304.3 261 61.3
PGR042G3985 Punica granatum HOM05D004157 ORTHO05D004860 1.5e-80 303.5 251 58.2
Duzib052G0280 Durio zibethinus HOM05D004157 ORTHO05D004860 1.7e-79 300.1 262 59.2
SHI05673 Sapria himalayana HOM05D004157 ORTHO05D004860 3.8e-79 298.9 210 68.6
Eucgr.G01750 Eucalyptus grandis HOM05D004157 ORTHO05D004860 2.5e-78 296.2 249 59.4
AT4G34840 Arabidopsis thaliana HOM05D004157 ORTHO05D004860 1.6e-77 293.5 205 67.3
Actinidia27843 Actinidia chinensis HOM05D004157 ORTHO05D004860 1.8e-76 290.0 235 62.1
Ciclev10029225m.g Citrus clementina HOM05D004157 ORTHO05D004860 3.9e-76 288.9 248 59.7
Prupe.8G159500 Prunus persica HOM05D004157 ORTHO05D004860 5.2e-76 288.5 275 57.1
AUR62013103 Chenopodium quinoa HOM05D004157 ORTHO05D004860 2.0e-75 286.6 183 78.1
Lsat_1_v5_gn_1_62181 Lactuca sativa HOM05D004157 ORTHO05D004860 9.7e-75 284.3 240 57.5
Potri.009G128700 Populus trichocarpa HOM05D004157 ORTHO05D004860 9.7e-75 284.3 198 68.2
CDE02G2528 Ceratophyllum demersum HOM05D004157 ORTHO05D004860 2.6e-72 276.2 267 53.6
Pp3c14_1450 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-71 273.5 243 56.8
Pp3c1_20870 Physcomitrium patens HOM05D004157 ORTHO05D004860 2.9e-71 272.7 253 54.9
Rhsim11G0186900 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.5e-70 270.4 204 65.2
Cpa.g.sc37.201 Carica papaya HOM05D004157 ORTHO05D004860 3.2e-70 269.2 266 54.5
Rhsim05G0063700 Rhododendron simsii HOM05D004157 ORTHO05D004860 4.7e-69 265.4 196 67.3
AagrBONN_evm.TU.Sc2ySwM_368.2286 Anthoceros agrestis HOM05D004157 ORTHO05D004860 4.0e-68 262.3 245 53.1
vmacro22693 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 4.0e-68 262.3 305 47.5
Mapoly0026s0093 Marchantia polymorpha HOM05D004157 ORTHO05D004860 6.8e-68 261.5 243 53.9
SEGI_37242 Sequoiadendron giganteum HOM05D004157 ORTHO05D004860 1.2e-67 260.8 187 65.8
Pp3c26_5320 Physcomitrium patens HOM05D004157 ORTHO05D004860 1.7e-66 256.9 234 54.7
BraA08t33620Z Brassica rapa HOM05D004157 ORTHO05D004860 2.2e-66 256.5 201 61.2
SMO147G0350 Selaginella moellendorffii HOM05D004157 ORTHO05D004860 9.1e-65 251.1 252 51.2
PGR042G2276 Punica granatum HOM05D004157 ORTHO05D004860 1.2e-59 234.2 251 50.6
Nitab4.5_0000980g0360 Nicotiana tabacum HOM05D004157 ORTHO05D004860 3.4e-59 232.6 146 78.8
Cre03.g162550 Chlamydomonas reinhardtii HOM05D004157 ORTHO05D004860 1.8e-57 226.9 234 49.6
vmacro02237 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 1.9e-54 216.9 207 56.5
MCO15G557 Micromonas commoda HOM05D004157 ORTHO05D004860 2.5e-54 216.5 244 45.5
Dinv04975 Davidia involucrata HOM05D000600 ORTHO05D000432 4.7e-53 212.2 139 71.9
Rhsim11G0185600 Rhododendron simsii HOM05D004157 ORTHO05D004860 1.1e-49 201.1 187 56.1
Rhsim11G0186700 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.3e-44 183.3 166 58.4
SalBow3G1540 Salvia bowleyana HOM05D004157 ORTHO05D004860 7.5e-43 178.3 122 73.0
C07p63580 Brassica napus HOM05D004157 ORTHO05D004860 4.7e-37 159.1 118 74.6
BolC7t46771H Brassica oleracea HOM05D004157 ORTHO05D004860 4.7e-37 159.1 118 74.6
MBI09_g11914_MAGBIO Magnolia biondii HOM05D004157 ORTHO05D004860 5.8e-35 152.1 105 71.4
Eucgr.L03396 Eucalyptus grandis HOM05D004157 ORTHO05D004860 1.3e-34 151.0 104 65.4
Hma1.2p1_0032F.1_g019710 Hydrangea macrophylla HOM05D004157 ORTHO05D004860 3.2e-33 146.4 148 56.1
PRCOL_00006969 Prasinoderma coloniale HOM05D004157 ORTHO05D004860 3.2e-33 146.4 240 37.5
TAR625G0759 Trochodendron aralioides HOM05D004157 ORTHO05D004860 3.5e-32 142.9 100 70.0
Haze_02206 Corylus avellana HOM05D000447 ORTHO05D000315 1.2e-27 127.9 99 65.7
Medtr0173s0020 Medicago truncatula HOM05D004157 ORTHO05D004860 1.6e-21 107.5 82 68.3
arahy.Tifrunner.gnm1.ann1.R1P6K1 Arachis hypogaea HOM05D004157 ORTHO05D004860 1.8e-20 104.0 165 39.4
TAR625G0858 Trochodendron aralioides HOM05D004157 ORTHO05D004860 1.8e-20 104.0 175 39.4
SalBow3G3146 Salvia bowleyana HOM05D004157 ORTHO05D004860 1.3e-18 97.8 139 41.0
CBR_g20180 Chara braunii HOM05D004157 ORTHO05D004860 8.4e-18 95.1 282 27.0
Aqoxy6G02338 Aquilegia oxysepala HOM05D004157 ORTHO05D004860 1.7e-15 87.4 85 54.1
vmacro02118 Vaccinium macrocarpon HOM05D004157 ORTHO05D004860 6.2e-13 79.0 68 55.9
Glyma.04G006001 Glycine max HOM05D004157 ORTHO05D004860 4.0e-12 76.3 65 50.8
Rhsim01G0041000 Rhododendron simsii HOM05D004157 ORTHO05D004860 2.9e-10 70.1 67 52.2
HPP92_002565 Vanilla planifolia HOM05D004157 ORTHO05D004860 6.6e-07 58.9 123 36.6


User provided reference genes

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