Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 1.4e-298 1028.9 543 100.0
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 3.9e-296 1020.8 543 99.4
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 4.4e-295 1017.3 543 99.1
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 6.7e-288 993.4 545 97.1
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 1.0e-275 953.0 547 93.1
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 3.1e-269 931.4 558 88.9
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 7.2e-266 920.2 558 87.3
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.0e-264 914.4 555 87.4
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 4.0e-264 914.4 555 87.2
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 7.5e-263 910.2 557 86.4
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 3.5e-260 901.4 557 85.6
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.1e-249 865.5 549 82.1
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.3e-235 818.9 551 77.3
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.4e-229 798.9 558 75.4
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 7.4e-202 707.6 532 70.7
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.3e-201 706.8 534 68.9
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.2e-199 700.3 557 66.8
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 1.5e-199 699.9 544 67.8
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 5.0e-198 694.9 537 67.8
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 1.4e-197 693.3 535 69.0
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 4.2e-197 691.8 540 68.9
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 1.6e-196 689.9 546 66.8
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 1.1e-194 683.7 534 69.1
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 1.1e-194 683.7 533 70.2
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.1e-194 683.7 533 70.2
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.3e-194 682.2 544 65.3
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.2e-193 679.5 532 69.5
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 3.7e-193 678.7 544 65.3
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 3.7e-193 678.7 531 68.7
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 8.2e-193 677.6 532 69.4
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 8.2e-193 677.6 551 67.9
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 3.1e-192 675.6 544 65.4
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 3.1e-192 675.6 541 67.8
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 1.2e-191 673.7 532 69.0
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.0e-191 672.9 540 67.2
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 1.3e-190 670.2 521 67.6
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 1.7e-190 669.8 524 67.7
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 5.0e-190 668.3 548 65.5
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 1.1e-189 667.2 539 66.8
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.6e-188 662.1 501 69.9
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 3.6e-188 662.1 540 65.7
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 3.6e-188 662.1 531 66.3
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 7.9e-188 661.0 535 65.4
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 1.8e-187 659.8 537 65.7
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 3.0e-187 659.1 528 66.1
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 5.1e-187 658.3 537 65.4
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 6.7e-187 657.9 545 64.6
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 6.7e-187 657.9 534 66.9
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 7.4e-186 654.4 539 64.2
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 9.7e-186 654.1 530 65.7
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 9.7e-186 654.1 551 63.9
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 9.7e-186 654.1 535 66.2
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 2.2e-185 652.9 500 69.6
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 3.7e-185 652.1 534 64.8
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.4e-184 650.2 546 64.8
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 1.4e-184 650.2 538 65.8
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 5.3e-184 648.3 549 63.8
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 6.9e-184 647.9 539 63.6
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 6.9e-184 647.9 538 65.4
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.2e-183 647.1 535 64.9
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 2.6e-183 646.0 538 65.6
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 5.9e-183 644.8 571 62.5
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 1.0e-182 644.0 565 63.7
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 1.7e-182 643.3 554 62.5
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 5.0e-182 641.7 549 62.7
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.9e-181 639.8 532 65.6
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 2.5e-181 639.4 551 63.7
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.2e-181 638.6 538 64.3
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 7.2e-181 637.9 538 64.7
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 1.6e-180 636.7 553 62.7
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 2.1e-180 636.3 540 64.1
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 3.0e-179 632.5 540 64.4
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 3.9e-179 632.1 554 63.7
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 1.1e-178 630.6 531 63.8
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 4.4e-178 628.6 468 70.1
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.8e-177 625.9 529 64.3
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 8.2e-177 624.4 514 67.1
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 8.2e-177 624.4 550 61.3
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 1.4e-176 623.6 562 61.0
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 3.1e-176 622.5 542 63.3
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 1.2e-175 620.5 533 63.0
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 1.2e-175 620.5 554 61.0
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 1.2e-172 610.5 558 60.6
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 1.8e-171 606.7 602 56.8
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 3.9e-171 605.5 533 62.5
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 3.9e-171 605.5 544 61.9
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 8.8e-171 604.4 560 60.2
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 4.4e-170 602.1 547 61.2
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 1.3e-169 600.5 342 93.9
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 1.7e-169 600.1 550 61.5
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.2e-167 594.0 537 60.0
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 2.6e-167 592.8 562 58.9
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 7.2e-165 584.7 490 62.4
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 8.8e-163 577.8 524 60.3
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 2.7e-156 556.2 442 66.1
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 4.1e-152 542.3 579 54.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.7e-142 510.4 597 48.2
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 9.5e-141 504.6 508 56.7
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.4e-130 469.2 383 68.9
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 5.4e-128 462.2 528 51.1
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.2e-127 461.1 493 55.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 1.2e-124 451.1 379 64.9
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 9.9e-122 441.4 477 51.6
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 4.3e-117 426.0 453 54.3
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 7.3e-117 425.2 355 64.2
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 6.0e-111 405.6 520 43.3
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 5.6e-109 399.1 299 68.6
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 3.6e-108 396.4 333 63.7
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 4.8e-108 396.0 300 69.3
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 2.0e-106 390.6 307 68.7
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 2.4e-104 383.6 307 67.8
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 4.3e-101 372.9 275 69.1
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 6.4e-97 359.0 385 52.7
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 1.5e-93 347.8 344 55.8
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 2.5e-93 347.1 344 55.8
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 6.5e-89 332.4 573 37.9
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 1.3e-84 318.2 560 36.6
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 1.1e-80 305.1 269 61.3
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.8e-78 297.7 520 36.2
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 7.7e-74 282.3 270 61.1
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.0e-62 245.4 166 71.7
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 4.8e-52 209.9 554 31.2
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.0e-49 202.2 186 54.8
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 4.4e-45 186.8 183 55.7
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 5.4e-43 179.9 260 46.5
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 1.6e-34 151.8 117 67.5
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 3.5e-34 150.6 423 27.0
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 5.9e-34 149.8 365 27.7
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 2.1e-31 141.4 412 29.4
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 2.5e-24 117.9 351 27.4
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 4.3e-24 117.1 91 67.0
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 7.3e-24 116.3 84 66.7
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 9.5e-24 115.9 541 25.7
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 2.2e-20 104.8 71 70.4
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.4e-19 102.1 142 43.7
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 5.4e-19 100.1 129 48.1
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.0e-17 94.4 448 23.9
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 3.3e-16 90.9 514 23.9
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 2.1e-15 88.2 142 40.8
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 3.5e-10 70.9 448 22.1
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 6.0e-10 70.1 224 29.0
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 1.2e-07 62.4 230 26.1
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 1.6e-07 62.0 253 23.7
Pp3c18_21450 Physcomitrium patens HOM05D002512 ORTHO05D002660 2.8e-07 61.2 226 27.4
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.1e-06 59.3 51 58.8
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 6.8e-06 56.6 238 24.4
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 6.8e-06 56.6 44 61.4


User provided reference genes

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