Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.5e-124 449.5 228 100.0
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 2.7e-121 438.7 223 98.7
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 1.3e-120 436.4 223 98.2
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.9e-120 434.9 228 96.1
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 2.4e-117 425.6 228 93.9
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 5.2e-117 424.5 228 94.3
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 1.7e-115 419.5 222 95.5
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 1.4e-114 416.4 228 89.9
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.5e-111 406.4 228 88.6
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 1.6e-110 402.9 226 87.6
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 3.6e-110 401.7 226 86.7
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 6.2e-110 401.0 226 87.2
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.4e-109 399.8 228 87.3
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-109 399.8 224 88.4
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.4e-109 399.8 228 87.3
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 1.4e-109 399.8 225 90.7
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 1.4e-109 399.8 228 86.0
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 1.8e-109 399.4 226 87.2
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 3.1e-109 398.7 221 87.3
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 3.1e-109 398.7 228 86.8
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 5.3e-109 397.9 228 87.3
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 9.0e-109 397.1 205 97.1
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 5.8e-108 394.4 224 87.9
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 7.6e-108 394.0 204 96.6
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.3e-107 393.3 224 87.9
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 2.9e-107 392.1 224 87.5
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.3e-102 376.7 228 79.8
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.3e-102 376.7 228 80.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 2.8e-102 375.6 228 78.9
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-101 373.2 220 84.1
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 1.8e-101 372.9 228 78.9
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 4.0e-101 371.7 228 77.6
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.2e-100 370.2 228 79.4
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 3.4e-100 368.6 226 80.1
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 3.4e-100 368.6 228 79.8
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 1.3e-99 366.7 228 77.6
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 2.2e-99 365.9 223 78.9
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.8e-99 365.2 209 87.1
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.8e-99 365.2 209 87.1
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.9e-98 362.8 223 78.0
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 3.2e-98 362.1 226 77.4
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 4.2e-98 361.7 229 78.6
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.2e-98 361.7 223 78.5
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 5.4e-98 361.3 204 86.8
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 5.4e-98 361.3 226 76.5
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 9.3e-98 360.5 226 76.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 3.5e-97 358.6 226 75.7
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 4.6e-97 358.2 226 77.0
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 6.0e-97 357.8 226 76.5
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 6.0e-97 357.8 224 76.8
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.3e-96 356.7 222 76.6
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 6.7e-96 354.4 227 74.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 8.7e-96 354.0 227 74.9
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.1e-95 353.6 226 75.2
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.5e-95 353.2 224 75.0
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 1.9e-95 352.8 227 74.4
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.9e-95 352.8 230 74.3
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 4.3e-95 351.7 228 74.1
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 7.4e-95 350.9 224 76.8
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 73.0
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 73.0
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 9.6e-95 350.5 227 74.0
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 1.3e-94 350.1 226 72.6
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.6e-94 349.7 230 73.5
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 6.2e-94 347.8 224 76.3
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 1.1e-93 347.1 228 71.9
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.4e-93 346.7 228 72.8
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 2.4e-93 345.9 221 76.9
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 4.0e-93 345.1 221 76.5
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.0e-93 345.1 220 75.9
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 9.0e-93 344.0 218 75.7
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 9.0e-93 344.0 224 75.4
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.2e-92 343.6 226 70.8
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.2e-92 343.6 219 76.7
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.2e-92 343.6 219 76.7
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.5e-92 343.2 219 76.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 1.5e-92 343.2 224 75.9
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.0e-92 342.8 222 74.3
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.4e-92 342.0 224 75.0
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 5.8e-92 341.3 218 76.1
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.2e-91 339.3 221 73.8
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 2.9e-91 339.0 221 74.2
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 4.9e-91 338.2 223 74.0
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 8.4e-91 337.4 221 74.7
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.1e-90 337.0 221 73.8
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 1.9e-90 336.3 220 73.6
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 3.2e-90 335.5 219 73.5
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 3.2e-90 335.5 228 71.9
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 5.5e-90 334.7 237 69.6
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 7.1e-90 334.3 219 73.5
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 2.1e-89 332.8 227 71.8
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 2.7e-89 332.4 227 70.9
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 4.6e-89 331.6 219 72.1
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 1.0e-88 330.5 219 71.2
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.8e-88 329.7 228 71.1
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 1.8e-88 329.7 217 72.4
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 1.8e-88 329.7 215 72.6
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.3e-88 329.3 204 75.5
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 3.9e-88 328.6 228 70.6
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.5e-87 326.6 228 69.7
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.5e-87 326.6 228 70.2
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.9e-87 326.2 202 77.2
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 2.5e-87 325.9 211 73.0
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 7.4e-87 324.3 215 73.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 9.6e-87 323.9 206 84.0
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 2.1e-86 322.8 222 70.3
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 4.8e-86 321.6 221 70.6
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 4.8e-86 321.6 221 70.6
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 6.2e-86 321.2 218 71.1
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 6.2e-86 321.2 204 76.0
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-85 320.5 227 69.2
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-85 320.1 227 69.2
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 1.8e-85 319.7 210 71.0
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.4e-85 319.3 210 72.9
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.2e-84 317.0 204 72.5
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.3e-83 313.5 231 67.5
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.7e-83 313.2 230 68.3
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 6.5e-83 311.2 203 72.9
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 8.4e-83 310.8 204 75.0
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.4e-82 310.1 263 60.8
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.4e-82 310.1 206 72.8
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 1.4e-82 310.1 224 68.3
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 7.9e-81 304.3 159 97.5
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.9e-81 304.3 221 67.0
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.3e-80 303.5 202 72.8
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 8.7e-80 300.8 243 62.1
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 4.1e-77 292.0 212 67.5
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.0e-76 289.7 212 68.4
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 3.4e-76 288.9 198 71.2
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 1.3e-75 287.0 229 63.8
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.3e-75 287.0 202 67.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 5.5e-74 281.6 186 73.1
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 3.6e-73 278.9 175 76.6
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 4.6e-73 278.5 194 70.6
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 7.9e-73 277.7 208 69.7
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.4e-72 276.9 228 64.9
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.3e-70 270.4 214 65.0
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 8.2e-70 267.7 223 61.0
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.6e-68 262.7 207 64.3
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.3e-67 260.4 224 59.4
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.0e-64 250.8 160 78.1
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.0e-64 250.8 230 58.7
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.0e-64 249.2 152 84.9
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 3.0e-64 249.2 219 58.9
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 9.7e-63 244.2 214 60.3
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 1.7e-62 243.4 152 78.9
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 6.3e-62 241.5 197 62.4
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 5.3e-61 238.4 220 60.5
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.7e-59 233.4 226 54.4
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.9e-59 232.6 224 55.8
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.1e-58 230.7 211 57.8
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 4.7e-57 225.3 212 55.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.8e-56 223.4 185 63.8
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 8.2e-54 214.5 227 52.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 3.8e-51 205.7 211 50.2
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 6.1e-49 198.4 105 93.3
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-47 194.1 128 81.2
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 2.2e-46 189.9 188 60.6
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 2.9e-43 179.5 237 44.7
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 2.0e-39 166.8 111 70.3
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 4.9e-38 162.2 119 75.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 1.2e-36 157.5 217 43.8
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 2.9e-35 152.9 237 40.1
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 5.0e-35 152.1 99 74.7
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 8.6e-35 151.4 232 41.4
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 5.4e-29 132.1 123 58.5
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 5.6e-26 122.1 157 43.3
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 6.1e-25 118.6 78 73.1
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 9.2e-21 104.8 73 65.8
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.1e-18 97.8 77 62.3
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 4.0e-16 89.4 73 58.9
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 1.3e-14 84.3 205 30.2
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.2e-13 79.7 110 44.5
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 3.1e-08 63.2 40 67.5
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 1.3e-06 57.8 66 51.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 4.9e-06 55.8 71 47.9


User provided reference genes

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