Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00225 Brassica carinata HOM05D007350 ORTHO05D009323 1.7e-73 279.3 146 100.0
A08p24200 Brassica napus HOM05D007350 ORTHO05D009323 9.6e-64 246.9 150 91.3
C03p77120 Brassica napus HOM05D007350 ORTHO05D009323 2.1e-63 245.7 150 90.0
BolC3t19964H Brassica oleracea HOM05D007350 ORTHO05D009323 3.6e-63 245.0 150 90.0
BraA08t34374Z Brassica rapa HOM05D007350 ORTHO05D009323 6.2e-63 244.2 150 90.7
BcaC01g00233 Brassica carinata HOM05D007350 ORTHO05D009323 7.9e-58 227.3 147 88.4
Thhalv10026464m.g Eutrema salsugineum HOM05D007350 ORTHO05D009323 1.3e-44 183.3 149 75.2
Sp7g37290 Schrenkiella parvula HOM05D007350 ORTHO05D009323 3.0e-41 172.2 149 72.5
CARHR294210 Cardamine hirsuta HOM05D007350 ORTHO05D009323 9.7e-40 167.2 149 68.5
Carub.0007s0037 Capsella rubella HOM05D007350 ORTHO05D009323 1.2e-37 160.2 155 67.7
AL7G10350 Arabidopsis lyrata HOM05D007350 ORTHO05D009323 1.2e-34 150.2 145 67.6
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.6e-34 148.7 155 59.4
AT4G38490 Arabidopsis thaliana HOM05D007350 ORTHO05D009323 1.1e-32 143.7 147 63.3
THA.LOC104807801 Tarenaya hassleriana HOM05D007350 ORTHO05D009323 2.0e-29 132.9 149 57.7
Thecc.02G055300 Theobroma cacao HOM05D007350 ORTHO05D009323 9.7e-24 114.0 159 48.4
COL.COLO4_17379 Corchorus olitorius HOM05D007350 ORTHO05D009323 8.2e-23 110.9 158 46.8
Gohir.D02G227300 Gossypium hirsutum HOM05D007350 ORTHO05D009323 9.1e-22 107.5 123 54.5
Gohir.A03G205900 Gossypium hirsutum HOM05D007350 ORTHO05D009323 1.5e-21 106.7 123 54.5
Gorai.005G255200 Gossypium raimondii HOM05D007350 ORTHO05D009323 2.0e-21 106.3 123 54.5
MSTRG.20506 Avicennia marina HOM05D007350 ORTHO05D009323 7.7e-21 104.4 120 51.7
Lalb_Chr02g0159761 Lupinus albus HOM05D007350 ORTHO05D009323 8.5e-20 100.9 87 62.1
Duzib052G1005 Durio zibethinus HOM05D007350 ORTHO05D009323 1.1e-19 100.5 95 62.1
SGA_v2.0_scaffold124G33608 Striga asiatica HOM05D007350 ORTHO05D009323 5.5e-19 98.2 78 70.5
Ciclev10029452m.g Citrus clementina HOM05D007350 ORTHO05D009323 7.2e-19 97.8 86 61.6
QL11p052353 Quercus lobata HOM05D007350 ORTHO05D009323 7.2e-19 97.8 80 65.0
TWI79G1045 Tripterygium wilfordii HOM05D007350 ORTHO05D009323 9.4e-19 97.4 99 56.6
Rhsim03G0180300 Rhododendron simsii HOM05D007350 ORTHO05D009323 1.6e-18 96.7 80 62.5
Haze_02104 Corylus avellana HOM05D007350 ORTHO05D009323 2.7e-18 95.9 162 43.2
Actinidia20526 Actinidia chinensis HOM05D007350 ORTHO05D009323 3.6e-18 95.5 145 43.4
Nn4g24553 Nelumbo nucifera HOM05D007350 ORTHO05D009323 3.6e-18 95.5 86 61.6
Prupe.8G169100 Prunus persica HOM05D007350 ORTHO05D009323 4.7e-18 95.1 156 42.9
VMungo0464G1538 Vigna mungo HOM05D007350 ORTHO05D009323 4.7e-18 95.1 77 63.6
Manes.04G071000 Manihot esculenta HOM05D007350 ORTHO05D009323 8.0e-18 94.4 149 45.6
Phvul.004G019500 Phaseolus vulgaris HOM05D007350 ORTHO05D009323 8.0e-18 94.4 77 62.3
TPR.G2262 Trifolium pratense HOM05D007350 ORTHO05D009323 8.0e-18 94.4 159 42.8
CsaV3_7G001160 Cucumis sativus L. HOM05D007350 ORTHO05D009323 1.0e-17 94.0 90 62.2
Psat1g060320 Pisum sativum HOM05D007350 ORTHO05D009323 1.4e-17 93.6 161 42.2
Sabra04G0119700 Salix brachista HOM05D007350 ORTHO05D009323 1.8e-17 93.2 80 57.5
arahy.Tifrunner.gnm1.ann1.7M0RFB Arachis hypogaea HOM05D007350 ORTHO05D009323 2.3e-17 92.8 87 58.6
Cpa.g.sc20.115 Carica papaya HOM05D007350 ORTHO05D009323 2.3e-17 92.8 79 60.8
ClCG02G003950 Citrullus lanatus HOM05D007350 ORTHO05D009323 3.0e-17 92.4 88 60.2
MELO3C013337.2 Cucumis melo HOM05D007350 ORTHO05D009323 3.9e-17 92.0 87 58.6
Os09g0450200 Oryza sativa ssp. japonica HOM05D007350 ORTHO05D009323 3.9e-17 92.0 74 64.9
Potri.004G177800 Populus trichocarpa HOM05D007350 ORTHO05D009323 3.9e-17 92.0 80 56.2
MD10G1127900 Malus domestica HOM05D007350 ORTHO05D009323 5.2e-17 91.7 80 61.2
CDE05G3477 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 6.7e-17 91.3 87 57.5
Lj2g0024385 Lotus japonicus HOM05D007350 ORTHO05D009323 8.8e-17 90.9 80 60.0
RcHm_v2.0_Chr6g0278901 Rosa chinensis HOM05D007350 ORTHO05D009323 8.8e-17 90.9 154 44.2
Sc08g0002720 Simmondsia chinensis HOM05D007350 ORTHO05D009323 8.8e-17 90.9 81 59.3
ATR0598G093 Amborella trichopoda HOM05D007350 ORTHO05D009323 1.1e-16 90.5 79 62.0
FAN27G1653 Fragaria x ananassa HOM05D007350 ORTHO05D009323 1.5e-16 90.1 99 55.6
CAN.G112.14 Capsicum annuum HOM05D007350 ORTHO05D009323 2.0e-16 89.7 90 52.2
FvH4_2g15660 Fragaria vesca HOM05D007350 ORTHO05D009323 2.0e-16 89.7 77 63.6
FAN24G2045 Fragaria x ananassa HOM05D007350 ORTHO05D009323 2.0e-16 89.7 77 63.6
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 2.0e-16 89.7 93 53.8
CiPaw.05G085400 Carya illinoinensis HOM05D007350 ORTHO05D009323 2.6e-16 89.4 86 58.1
Eucgr.G01372 Eucalyptus grandis HOM05D007350 ORTHO05D009323 3.3e-16 89.0 78 61.5
Hma1.2p1_0032F.1_g019200 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 3.3e-16 89.0 80 57.5
Aqoxy3G04007 Aquilegia oxysepala HOM05D007350 ORTHO05D009323 4.4e-16 88.6 79 57.0
RcHm_v2.0_Chr6g0278921 Rosa chinensis HOM05D007350 ORTHO05D009323 4.4e-16 88.6 77 63.6
Hund16245 Selenicereus undatus HOM05D007350 ORTHO05D009323 4.4e-16 88.6 79 58.2
Actinidia18040 Actinidia chinensis HOM05D007350 ORTHO05D009323 9.7e-16 87.4 101 49.5
Glyma.13G070400 Glycine max HOM05D007350 ORTHO05D009323 9.7e-16 87.4 79 57.0
Glyma.19G012500 Glycine max HOM05D007350 ORTHO05D009323 9.7e-16 87.4 79 58.2
MBI19_g01918_MAGBIO Magnolia biondii HOM05D007350 ORTHO05D009323 9.7e-16 87.4 82 54.9
PSO063G0872 Papaver somniferum HOM05D007350 ORTHO05D009323 9.7e-16 87.4 73 57.5
PSO782G4816 Papaver somniferum HOM05D007350 ORTHO05D009323 9.7e-16 87.4 73 57.5
PGR042G2321 Punica granatum HOM05D007350 ORTHO05D009323 9.7e-16 87.4 78 56.4
Ca_04216_v3 Cicer arietinum L. HOM05D007350 ORTHO05D009323 1.7e-15 86.7 83 54.2
FAN15G0854 Fragaria x ananassa HOM05D007350 ORTHO05D009323 1.7e-15 86.7 75 64.0
Medtr6g007793 Medicago truncatula HOM05D007350 ORTHO05D009323 1.7e-15 86.7 83 54.2
GSVIVG01023973001 Vitis vinifera HOM05D007350 ORTHO05D009323 1.7e-15 86.7 81 53.1
Oeu025102.1 Olea europaea HOM05D007350 ORTHO05D009323 2.2e-15 86.3 86 53.5
Solyc05g050720.4 Solanum lycopersicum HOM05D007350 ORTHO05D009323 2.2e-15 86.3 84 52.4
Sopen05g029130 Solanum pennellii HOM05D007350 ORTHO05D009323 2.2e-15 86.3 84 52.4
TAR374G1157 Trochodendron aralioides HOM05D007350 ORTHO05D009323 2.8e-15 85.9 90 53.3
Nitab4.5_0005221g0020 Nicotiana tabacum HOM05D007350 ORTHO05D009323 6.3e-15 84.7 84 51.2
Lsat_1_v5_gn_4_72021 Lactuca sativa HOM05D007350 ORTHO05D009323 8.2e-15 84.3 82 57.3
Sed0025246 Sechium edule HOM05D007350 ORTHO05D009323 1.1e-14 84.0 89 55.1
AUR62010011 Chenopodium quinoa HOM05D007350 ORTHO05D009323 1.4e-14 83.6 79 53.2
Migut.B01238 Erythranthe guttata HOM05D007350 ORTHO05D009323 1.4e-14 83.6 72 61.1
AUR62013001 Chenopodium quinoa HOM05D007350 ORTHO05D009323 2.4e-14 82.8 77 54.5
HanXRQChr10g0298081 Helianthus annuus HOM05D007350 ORTHO05D009323 2.4e-14 82.8 100 51.0
CANSAT78G0569 Cannabis sativa HOM05D007350 ORTHO05D009323 4.1e-14 82.0 77 59.7
Nitab4.5_0002598g0070 Nicotiana tabacum HOM05D007350 ORTHO05D009323 4.1e-14 82.0 87 50.6
Cc09_g10330 Coffea canephora HOM05D007350 ORTHO05D009323 5.3e-14 81.6 146 40.4
Hma1.2p1_0032F.1_g019210 Hydrangea macrophylla HOM05D007350 ORTHO05D009323 1.2e-13 80.5 60 70.0
ECA234G1892 Erigeron canadensis HOM05D007350 ORTHO05D009323 5.9e-13 78.2 90 51.1
Atru.chr5.3441 Acer truncatum HOM05D007350 ORTHO05D009323 1.0e-12 77.4 72 55.6
CDE11G0403 Ceratophyllum demersum HOM05D007350 ORTHO05D009323 1.3e-12 77.0 60 68.3
MD10G1128000 Malus domestica HOM05D007350 ORTHO05D009323 1.6e-10 70.1 54 72.2
Mapoly0060s0112 Marchantia polymorpha HOM05D007350 ORTHO05D009323 5.7e-08 61.6 72 41.7
Atru.chr6.83 Acer truncatum HOM05D007350 ORTHO05D009323 7.5e-08 61.2 75 48.0
SalBow5G3345 Salvia bowleyana HOM05D007350 ORTHO05D009323 1.4e-06 57.0 71 42.3
Dinv09314 Davidia involucrata HOM05D007350 ORTHO05D009323 2.4e-06 56.2 49 46.9


User provided reference genes

Program Settings