Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 3.3e-127 458.4 229 100.0
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 1.1e-125 453.4 229 98.7
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 9.0e-125 450.3 229 97.8
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 1.6e-121 439.5 230 97.0
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 1.6e-121 439.5 229 96.1
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 6.0e-113 411.0 227 92.1
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 4.0e-109 398.3 227 86.8
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 7.6e-108 394.0 227 85.9
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 6.4e-107 391.0 227 86.8
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 8.7e-104 380.6 224 85.3
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 2.1e-102 375.9 223 83.4
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 2.6e-100 369.0 225 79.6
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 4.3e-95 351.7 224 75.4
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 4.2e-90 335.1 224 71.9
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 7.2e-90 334.3 227 70.5
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.2e-89 333.6 224 73.7
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 1.1e-87 327.0 226 70.8
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 2.0e-87 326.2 224 71.4
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 6.3e-86 321.2 224 68.8
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 8.2e-86 320.9 226 69.9
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 1.8e-85 319.7 227 67.0
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 6.9e-85 317.8 224 69.2
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 9.1e-85 317.4 230 65.2
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 2.0e-84 316.2 226 69.0
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 2.0e-84 316.2 218 69.7
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 3.4e-84 315.5 227 68.7
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 3.4e-84 315.5 228 65.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 5.9e-84 314.7 225 68.0
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 7.7e-84 314.3 247 64.0
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.0e-83 313.9 229 67.7
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.0e-83 313.9 224 68.3
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 1.7e-83 313.2 228 66.2
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 1.7e-83 313.2 225 68.4
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 2.2e-83 312.8 229 67.2
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 2.9e-83 312.4 226 69.0
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 6.5e-83 311.2 225 67.6
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 8.5e-83 310.8 227 68.3
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 8.5e-83 310.8 228 66.7
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 1.1e-82 310.5 232 66.8
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 1.4e-82 310.1 223 65.0
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 4.2e-82 308.5 241 63.9
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 5.5e-82 308.1 223 66.4
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 7.2e-82 307.8 224 67.9
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 7.2e-82 307.8 224 67.4
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 7.2e-82 307.8 224 65.6
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 7.2e-82 307.8 220 68.6
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 9.4e-82 307.4 224 65.6
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 1.2e-81 307.0 227 66.1
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 1.2e-81 307.0 228 68.0
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 2.1e-81 306.2 229 64.2
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 3.6e-81 305.4 227 67.4
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 6.1e-81 304.7 220 68.2
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 7.9e-81 304.3 227 66.1
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 1.4e-80 303.5 224 66.5
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.8e-80 303.1 227 65.2
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 3.9e-80 302.0 224 67.0
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 5.1e-80 301.6 224 67.0
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 6.7e-80 301.2 228 67.1
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 1.1e-79 300.4 208 69.7
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.5e-79 300.1 226 63.7
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 1.5e-79 300.1 220 66.4
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 2.6e-79 299.3 224 63.8
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 2.6e-79 299.3 226 65.5
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 5.7e-79 298.1 223 66.4
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 1.3e-78 297.0 230 63.9
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 2.2e-78 296.2 220 64.5
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 3.7e-78 295.4 222 63.1
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 6.3e-78 294.7 231 64.9
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 8.2e-78 294.3 220 65.9
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 8.2e-78 294.3 227 67.4
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 2.4e-77 292.7 226 63.7
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 4.1e-77 292.0 220 65.0
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.3e-77 291.6 226 62.8
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 9.1e-77 290.8 226 62.4
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 1.3e-75 287.0 220 64.5
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 1.1e-74 283.9 227 64.3
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 9.4e-74 280.8 223 61.0
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 3.6e-73 278.9 222 62.6
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.4e-72 276.9 245 60.4
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 8.8e-72 274.2 246 59.8
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 7.4e-71 271.2 245 59.2
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 8.2e-70 267.7 223 60.5
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 5.9e-68 261.5 230 57.4
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 8.5e-67 257.7 246 54.1
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-66 256.9 230 57.4
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 5.5e-66 255.0 124 100.0
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 6.1e-65 251.5 124 97.6
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 3.0e-64 249.2 162 71.0
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 4.0e-64 248.8 220 55.9
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.5e-63 246.9 162 69.8
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 2.2e-62 243.0 220 56.4
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 2.8e-62 242.7 220 58.2
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 9.1e-61 237.7 155 71.0
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.2e-57 227.3 235 52.3
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 1.6e-57 226.9 160 67.5
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 8.0e-57 224.6 140 73.6
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 1.0e-56 224.2 235 51.9
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 8.8e-56 221.1 170 62.9
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 2.6e-55 219.5 175 63.4
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 3.7e-54 215.7 228 50.4
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 8.3e-54 214.5 173 61.3
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 1.1e-53 214.2 224 49.6
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 4.1e-53 212.2 222 49.1
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 4.5e-52 208.8 167 62.3
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 6.6e-51 204.9 166 62.0
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 1.2e-49 200.7 222 47.3
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 3.0e-48 196.1 168 58.3
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 7.0e-45 184.9 245 44.1
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 3.1e-40 169.5 142 57.0
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 2.9e-38 162.9 125 64.0
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 5.0e-35 152.1 107 65.4
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 3.3e-34 149.4 145 57.2
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.4e-31 139.4 129 57.4
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 6.0e-28 128.6 144 52.8
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 1.3e-27 127.5 222 39.2
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.1e-25 120.2 106 57.5
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 3.4e-23 112.8 91 63.7
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 3.4e-23 112.8 91 63.7
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 4.4e-15 85.9 57 70.2
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 4.4e-15 85.9 57 70.2
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 1.1e-13 81.3 62 61.3
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.6e-09 67.4 47 66.0
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 3.8e-06 56.2 30 76.7


User provided reference genes

Program Settings