Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 0.0e+00 1273.1 656 100.0
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 0.0e+00 1161.4 664 92.0
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 0.0e+00 1142.5 664 90.7
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 0.0e+00 1122.8 658 91.3
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 7.3e-297 1023.5 692 83.1
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 3.2e-252 875.2 847 63.2
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 2.0e-201 706.4 788 59.5
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 1.1e-186 657.5 755 58.4
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.8e-185 651.7 771 57.3
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 1.1e-175 620.9 794 53.7
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.9e-175 620.2 758 56.6
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.0e-173 614.4 762 56.3
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 6.7e-173 611.7 781 54.9
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 2.8e-171 606.3 811 53.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 1.8e-165 587.0 810 51.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 2.5e-156 556.6 815 50.2
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 9.1e-146 521.5 745 51.3
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 1.9e-111 407.5 790 43.4
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.7e-65 254.2 836 32.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 2.2e-27 128.3 690 25.2
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 2.2e-22 111.7 163 43.6
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 2.0e-20 105.1 107 47.7
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.7e-19 102.1 392 27.6
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 3.8e-19 100.9 170 37.1
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 5.0e-19 100.5 109 49.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 5.0e-19 100.5 219 33.3
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 6.5e-19 100.1 360 28.3
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 6.5e-19 100.1 207 36.2
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.1e-18 99.4 398 27.6
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.9e-18 98.6 121 45.5
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 2.5e-18 98.2 203 32.0
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 3.2e-18 97.8 243 30.0
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.2e-18 97.4 233 35.2
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 7.2e-18 96.7 99 51.5
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 9.4e-18 96.3 202 33.7
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.2e-17 95.9 380 27.4
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 1.2e-17 95.9 187 34.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.6e-17 95.5 159 39.0
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.1e-17 95.1 123 43.1
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 2.1e-17 95.1 130 40.8
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 2.7e-17 94.7 129 41.1
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.7e-17 94.7 238 31.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 3.6e-17 94.4 487 25.9
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.6e-17 94.4 125 43.2
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.7e-17 94.0 122 44.3
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.0e-16 92.8 163 36.8
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.4e-16 92.4 157 38.2
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 1.4e-16 92.4 372 28.8
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 2.3e-16 91.7 124 46.0
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.3e-16 91.7 154 39.6
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 3.0e-16 91.3 158 34.2
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 3.0e-16 91.3 380 27.1
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 4.0e-16 90.9 153 38.6
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 5.2e-16 90.5 124 40.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 8.8e-16 89.7 196 36.7
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 1.1e-15 89.4 746 25.3
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.6e-15 88.2 417 25.7
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 2.6e-15 88.2 157 37.6
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 2.6e-15 88.2 296 29.1
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.3e-15 87.8 458 26.2
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 4.4e-15 87.4 187 31.6
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 7.5e-15 86.7 94 43.6
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 7.5e-15 86.7 148 36.5
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 9.7e-15 86.3 146 38.4
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.2e-14 85.1 112 43.8
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-14 84.7 896 25.0
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 2.8e-14 84.7 167 34.7
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 3.7e-14 84.3 130 40.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 4.8e-14 84.0 157 39.5
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.8e-14 84.0 154 37.0
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 4.8e-14 84.0 154 37.0
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 8.2e-14 83.2 415 24.8
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.1e-13 82.8 226 28.8
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.4e-13 82.4 173 34.7
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 3.1e-13 81.3 139 45.3
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 4.1e-13 80.9 135 33.3
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 4.1e-13 80.9 207 33.8
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 5.3e-13 80.5 61 54.1
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 5.3e-13 80.5 145 37.9
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 7.0e-13 80.1 98 45.9
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 1.2e-12 79.3 131 45.0
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.2e-12 79.3 506 23.9
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 1.2e-12 79.3 256 31.2
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 1.2e-12 79.3 160 33.8
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 1.2e-12 79.3 150 36.7
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.6e-12 79.0 99 46.5
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 1.6e-12 79.0 414 28.0
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.6e-12 79.0 129 35.7
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 2.0e-12 78.6 191 33.5
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 2.0e-12 78.6 281 29.5
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 2.7e-12 78.2 90 44.4
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-12 78.2 75 49.3
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.7e-12 78.2 75 49.3
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 2.7e-12 78.2 75 49.3
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 3.5e-12 77.8 145 36.6
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 3.5e-12 77.8 487 25.5
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 3.5e-12 77.8 325 25.8
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.5e-12 77.4 736 23.6
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.0e-11 76.3 95 44.2
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.0e-11 76.3 590 23.7
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.9e-11 74.7 377 26.5
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 6.5e-11 73.6 36 77.8
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.5e-10 72.4 572 24.7
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 3.2e-10 71.2 485 26.2
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 4.2e-10 70.9 100 37.0
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 5.5e-10 70.5 321 24.0
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 2.1e-09 68.6 389 27.8
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.1e-09 68.6 193 30.6
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.7e-09 68.2 47 63.8
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 4.7e-09 67.4 122 38.5
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 6.1e-09 67.0 152 34.9
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 6.1e-09 67.0 152 34.9
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 6.1e-09 67.0 122 37.7
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 6.1e-09 67.0 115 40.0
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.4e-08 65.9 111 32.4
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 2.3e-08 65.1 150 38.0
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 2.3e-08 65.1 53 45.3
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 3.0e-08 64.7 120 36.7
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 3.0e-08 64.7 49 55.1
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 4.0e-08 64.3 358 26.8
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 5.2e-08 63.9 438 24.2
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 1.2e-07 62.8 166 33.7
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 2.0e-07 62.0 331 25.7
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 2.0e-07 62.0 149 33.6
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.6e-07 61.6 208 28.8
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.6e-07 61.6 103 38.8
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.4e-07 61.2 557 25.9
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 4.4e-07 60.8 40 55.0
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 7.5e-07 60.1 33 66.7
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.3e-06 59.3 31 71.0
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 3.7e-06 57.8 129 35.7
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 6.3e-06 57.0 317 25.9


User provided reference genes

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