Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00190 Brassica carinata HOM05D008352 ORTHO05D011361 1.2e-194 683.3 422 100.0
BraA08t34403Z Brassica rapa HOM05D008352 ORTHO05D011361 1.6e-159 566.6 441 82.1
A09p36020 Brassica napus HOM05D008352 ORTHO05D011361 1.4e-155 553.5 453 79.2
BraA09t39127Z Brassica rapa HOM05D008352 ORTHO05D011361 1.4e-155 553.5 453 79.0
BolC5t31669H Brassica oleracea HOM05D008352 ORTHO05D011361 1.8e-155 553.1 459 81.3
A08p24470 Brassica napus HOM05D008352 ORTHO05D011361 2.0e-154 549.7 454 78.9
BcaB07g32675 Brassica carinata HOM05D008352 ORTHO05D011361 1.3e-150 537.0 513 73.7
C05p29370 Brassica napus HOM05D008352 ORTHO05D011361 2.5e-149 532.7 513 73.3
C03p76750 Brassica napus HOM05D008352 ORTHO05D011361 1.7e-145 520.0 371 93.8
BcaNung06844 Brassica carinata HOM05D008352 ORTHO05D011361 2.2e-137 493.0 370 82.7
BcaB07g32652 Brassica carinata HOM05D008352 ORTHO05D011361 1.3e-134 483.8 459 71.9
Carub.0005s0757 Capsella rubella HOM05D008352 ORTHO05D011361 6.6e-89 332.0 466 48.7
AT3G28980 Arabidopsis thaliana HOM05D008352 ORTHO05D011361 3.5e-82 309.7 440 50.2
Sp2g17870 Schrenkiella parvula HOM05D008352 ORTHO05D011361 1.0e-81 308.1 469 52.5
CARHR152080 Cardamine hirsuta HOM05D008352 ORTHO05D011361 5.6e-80 302.4 455 50.3
AL5G18540 Arabidopsis lyrata HOM05D008352 ORTHO05D011361 2.1e-79 300.4 442 51.8
AT3G28810 Arabidopsis thaliana HOM05D008352 ORTHO05D011361 3.7e-76 289.7 442 47.7
Carub.0005s0735 Capsella rubella HOM05D008352 ORTHO05D011361 3.7e-76 289.7 478 49.2
AT3G28820 Arabidopsis thaliana HOM05D008352 ORTHO05D011361 6.4e-76 288.9 442 48.0
Thhalv10004155m.g Eutrema salsugineum HOM05D008352 ORTHO05D011361 1.1e-75 288.1 469 46.3
Sp1g26250 Schrenkiella parvula HOM05D008352 ORTHO05D011361 5.4e-75 285.8 456 48.0
AL5G18840 Arabidopsis lyrata HOM05D008352 ORTHO05D011361 2.7e-74 283.5 476 46.8
Aa31LG2G4400 Aethionema arabicum HOM05D008352 ORTHO05D011361 4.2e-43 179.9 584 35.3
C07p38160 Brassica napus HOM05D008352 ORTHO05D011361 2.2e-36 157.5 151 58.9
BolC7t44338H Brassica oleracea HOM05D008352 ORTHO05D011361 2.4e-35 154.1 148 58.8
A06p40010 Brassica napus HOM05D008352 ORTHO05D011361 5.4e-35 152.9 148 58.8
BraA06t26916Z Brassica rapa HOM05D008352 ORTHO05D011361 5.4e-35 152.9 148 58.8
THA.LOC104805452 Tarenaya hassleriana HOM05D008352 ORTHO05D011361 1.1e-32 145.2 470 33.2
THA.LOC104800047 Tarenaya hassleriana HOM05D008352 ORTHO05D011361 1.5e-32 144.8 470 33.2
THA.LOC104805455 Tarenaya hassleriana HOM05D008352 ORTHO05D011361 1.9e-32 144.4 470 33.2
THA.LOC104823934 Tarenaya hassleriana HOM05D008352 ORTHO05D011361 2.0e-29 134.4 496 28.6
Thhalv10003856m.g Eutrema salsugineum HOM05D007461 ORTHO05D011250 2.3e-25 120.9 149 46.3
Carub.0005s0734 Capsella rubella HOM05D007461 ORTHO05D011250 2.1e-23 114.4 158 47.5
AL7G50270 Arabidopsis lyrata HOM05D008352 ORTHO05D014403 2.8e-23 114.0 190 38.9
Sp2g17440 Schrenkiella parvula HOM05D007461 ORTHO05D011250 2.8e-23 114.0 144 47.2
BcaB04g19484 Brassica carinata HOM05D007461 ORTHO05D011250 3.7e-23 113.6 145 44.1
CARHR151820 Cardamine hirsuta HOM05D007461 ORTHO05D011250 8.2e-23 112.5 90 66.7
Thhalv10003975m.g Eutrema salsugineum HOM05D007461 ORTHO05D011250 2.4e-22 110.9 147 45.6
AT5G39870 Arabidopsis thaliana HOM05D008352 ORTHO05D014403 3.1e-22 110.5 193 38.9
A09p03780 Brassica napus HOM05D007461 ORTHO05D011250 3.1e-22 110.5 147 42.2
CARHR262310 Cardamine hirsuta HOM05D008352 ORTHO05D014403 3.1e-22 110.5 191 38.7
AT5G48575 Arabidopsis thaliana HOM05D008352 ORTHO05D011361 6.9e-22 109.4 98 61.2
Sp7g02170 Schrenkiella parvula HOM05D008352 ORTHO05D014403 5.8e-21 106.3 190 37.4
BcaB06g27388 Brassica carinata HOM05D008352 ORTHO05D014403 2.2e-20 104.4 187 38.5
A06p40340 Brassica napus HOM05D007461 ORTHO05D011250 2.9e-20 104.0 143 42.7
BraA06t26951Z Brassica rapa HOM05D007461 ORTHO05D011250 2.9e-20 104.0 143 42.7
Carub.0007s3585 Capsella rubella HOM05D008352 ORTHO05D014403 2.5e-19 100.9 219 34.2
AT3G28830 Arabidopsis thaliana HOM05D007461 ORTHO05D011250 5.5e-19 99.8 144 44.4
AL5G18560 Arabidopsis lyrata HOM05D007461 ORTHO05D011250 1.6e-18 98.2 144 43.8
C04p46350 Brassica napus HOM05D008352 ORTHO05D014403 1.6e-18 98.2 184 37.5
BolC4t26221H Brassica oleracea HOM05D008352 ORTHO05D014403 1.6e-18 98.2 184 37.5
AL5G18530 Arabidopsis lyrata HOM05D008352 ORTHO05D011250 2.7e-18 97.4 145 44.1
A04p12630 Brassica napus HOM05D008352 ORTHO05D014403 2.7e-18 97.4 184 37.5
BraA04t16920Z Brassica rapa HOM05D008352 ORTHO05D014403 2.7e-18 97.4 184 37.5
Sp2g17450 Schrenkiella parvula HOM05D007461 ORTHO05D011250 1.3e-17 95.1 482 34.0
BcaB06g27386 Brassica carinata HOM05D008352 ORTHO05D014403 3.0e-17 94.0 218 33.9
Aa31LG2G4440 Aethionema arabicum HOM05D011893 ORTHO05D013967 3.9e-17 93.6 173 35.8
BcaC04g23863 Brassica carinata HOM05D007461 ORTHO05D011250 6.7e-17 92.8 161 37.3
BcaC06g33642 Brassica carinata HOM05D007461 ORTHO05D011250 8.7e-17 92.4 131 42.0
BraA02t08642Z Brassica rapa HOM05D008352 ORTHO05D024480 8.7e-17 92.4 115 50.4
BolC7t44289H Brassica oleracea HOM05D007461 ORTHO05D011250 1.1e-16 92.0 131 42.0
C09p03980 Brassica napus HOM05D007461 ORTHO05D011250 1.9e-16 91.3 130 40.8
BolC9t53330H Brassica oleracea HOM05D007461 ORTHO05D011250 1.9e-16 91.3 130 40.8
THA.LOC104823938 Tarenaya hassleriana HOM05D008352 ORTHO05D014403 2.5e-16 90.9 181 37.6
Carub.0005s0737 Capsella rubella HOM05D007461 ORTHO05D011250 3.3e-16 90.5 133 42.9
C02p55020 Brassica napus HOM05D007461 ORTHO05D011250 4.3e-16 90.1 163 36.2
BcaC03g17532 Brassica carinata HOM05D007461 ORTHO05D011250 9.7e-16 89.0 147 36.7
BolC2t11559H Brassica oleracea HOM05D007461 ORTHO05D011250 9.7e-16 89.0 147 36.7
Carub.0005s0732 Capsella rubella HOM05D011893 ORTHO05D013967 9.7e-16 89.0 153 36.6
A02p36080 Brassica napus HOM05D007461 ORTHO05D011250 2.2e-15 87.8 147 36.1
BraA02t08608Z Brassica rapa HOM05D007461 ORTHO05D011250 2.2e-15 87.8 147 36.1
Aa31LG6G10300 Aethionema arabicum HOM05D007461 ORTHO05D011250 1.1e-14 85.5 153 37.9
C07p37710 Brassica napus HOM05D007461 ORTHO05D011250 1.1e-14 85.5 119 42.9
BcaC06g30894 Brassica carinata HOM05D007461 ORTHO05D011250 1.8e-14 84.7 124 41.1
AT3G28770 Arabidopsis thaliana HOM05D011893 ORTHO05D013967 2.4e-14 84.3 176 34.1
BraA09t36016Z Brassica rapa HOM05D007461 ORTHO05D011250 3.1e-14 84.0 117 41.9
CARHR151800 Cardamine hirsuta HOM05D008352 ORTHO05D011361 3.1e-14 84.0 68 66.2
Thhalv10009470m.g Eutrema salsugineum HOM05D008352 ORTHO05D011361 6.9e-14 82.8 254 33.9
A02p36470 Brassica napus HOM05D008352 ORTHO05D024480 1.2e-13 82.0 98 51.0
AL5G18500 Arabidopsis lyrata HOM05D011893 ORTHO05D013967 2.6e-13 80.9 148 35.8
BcaC03g17528 Brassica carinata HOM05D011893 ORTHO05D013967 4.5e-13 80.1 169 33.7
BolC2t11550H Brassica oleracea HOM05D011893 ORTHO05D013967 5.9e-13 79.7 165 34.5
C02p54900 Brassica napus HOM05D011893 ORTHO05D013967 7.7e-13 79.3 165 34.5
THA.LOC104823936 Tarenaya hassleriana HOM05D008352 ORTHO05D014403 1.0e-12 79.0 166 36.1
BcaB07g30118 Brassica carinata HOM05D011893 ORTHO05D013967 6.5e-12 76.3 165 33.3
AL8G21560 Arabidopsis lyrata HOM05D008352 ORTHO05D026834 8.5e-12 75.9 60 63.3
A02p36060 Brassica napus HOM05D011893 ORTHO05D013967 3.2e-11 73.9 165 33.3
BraA02t08605Z Brassica rapa HOM05D011893 ORTHO05D013967 3.2e-11 73.9 165 33.3
SpUn0298_0010 Schrenkiella parvula HOM05D011893 ORTHO05D013967 4.2e-11 73.6 140 37.1
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 2.7e-10 70.9 71 56.3
THA.LOC104808023 Tarenaya hassleriana HOM05D011893 ORTHO05D013967 1.4e-09 68.6 168 32.1
AT3G28790 Arabidopsis thaliana HOM05D007461 ORTHO05D011250 8.8e-09 65.9 148 37.2
C02p55400 Brassica napus HOM05D008352 ORTHO05D024480 2.5e-08 64.3 66 60.6
BolC2t11597H Brassica oleracea HOM05D008352 ORTHO05D024480 2.5e-08 64.3 66 60.6
THA.LOC104823935 Tarenaya hassleriana HOM05D008352 ORTHO05D014403 5.7e-08 63.2 170 32.4
BcaC03g17568 Brassica carinata HOM05D008352 ORTHO05D024480 2.2e-07 61.2 125 37.6
BcaC06g30895 Brassica carinata HOM05D007461 ORTHO05D010345 1.4e-06 58.5 145 31.7
Aa31LG2G4450 Aethionema arabicum HOM05D011893 ORTHO05D013967 3.1e-06 57.4 156 28.2
BraA02t08646Z Brassica rapa HOM05D008352 ORTHO05D026834 6.9e-06 56.2 106 37.7


User provided reference genes

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