Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00168 Brassica carinata HOM05D000193 ORTHO05D024284 8.3e-100 367.1 191 100.0
BcaB03g12201 Brassica carinata HOM05D000193 ORTHO05D000776 6.4e-60 234.6 354 46.9
A08p24630 Brassica napus HOM05D000193 ORTHO05D000776 1.4e-54 216.9 354 44.1
BraA08t34418Z Brassica rapa HOM05D000193 ORTHO05D000776 1.4e-54 216.9 354 44.1
BcaC01g00169 Brassica carinata HOM05D000193 ORTHO05D000776 2.9e-52 209.1 354 43.2
BcaC01g00171 Brassica carinata HOM05D000193 ORTHO05D000776 2.9e-52 209.1 354 43.2
BolC3t19904H Brassica oleracea HOM05D000193 ORTHO05D000776 6.5e-52 208.0 354 42.9
C03p76480 Brassica napus HOM05D000193 ORTHO05D000776 7.1e-51 204.5 354 42.7
Sp1g26040 Schrenkiella parvula HOM05D000193 ORTHO05D000776 3.0e-49 199.1 354 41.8
Thhalv10007189m.g Eutrema salsugineum HOM05D000193 ORTHO05D000776 3.9e-49 198.7 354 40.4
AL1G44130 Arabidopsis lyrata HOM05D000193 ORTHO05D000776 1.8e-46 189.9 354 39.5
Carub.0001s2845 Capsella rubella HOM05D000193 ORTHO05D000776 2.4e-46 189.5 354 39.5
AT1G30220 Arabidopsis thaliana HOM05D000193 ORTHO05D000776 2.9e-44 182.6 354 38.4
THA.LOC104812676 Tarenaya hassleriana HOM05D000193 ORTHO05D000776 3.4e-37 159.1 355 34.9
Gohir.A05G147100 Gossypium hirsutum HOM05D000193 ORTHO05D000776 2.3e-33 146.4 348 33.0
Gorai.009G153700 Gossypium raimondii HOM05D000193 ORTHO05D000776 2.3e-33 146.4 348 32.8
Ciclev10014738m.g Citrus clementina HOM05D000193 ORTHO05D000776 2.0e-32 143.3 350 32.6
Rhsim09G0005800 Rhododendron simsii HOM05D002711 ORTHO05D003390 2.6e-32 142.9 286 38.1
Thecc.06G147100 Theobroma cacao HOM05D000193 ORTHO05D000776 4.4e-32 142.1 351 32.2
Gohir.D05G149600 Gossypium hirsutum HOM05D000193 ORTHO05D000776 5.7e-32 141.7 313 34.5
TWI53G1577 Tripterygium wilfordii HOM05D000193 ORTHO05D000776 7.4e-32 141.4 348 33.3
Duzib235G1413 Durio zibethinus HOM05D000193 ORTHO05D000776 2.8e-31 139.4 348 32.5
CARHR029210 Cardamine hirsuta HOM05D000193 ORTHO05D000776 8.2e-31 137.9 185 46.5
Gohir.D10G043600 Gossypium hirsutum HOM05D000193 ORTHO05D000776 1.8e-30 136.7 354 31.9
PGR031G2356 Punica granatum HOM05D000193 ORTHO05D000776 3.1e-30 136.0 354 31.6
Rhsim13G0116000 Rhododendron simsii HOM05D000193 ORTHO05D000776 4.1e-30 135.6 355 33.0
Gohir.A10G042580 Gossypium hirsutum HOM05D000193 ORTHO05D000776 1.2e-29 134.0 345 32.2
Prupe.4G083700 Prunus persica HOM05D000193 ORTHO05D000776 1.5e-29 133.7 348 31.6
Dinv32227 Davidia involucrata HOM05D000193 ORTHO05D000776 2.0e-29 133.3 348 31.3
CSS0011544 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000776 7.7e-29 131.3 350 31.1
Haze_05635 Corylus avellana HOM05D000193 ORTHO05D000776 7.7e-29 131.3 348 31.0
Hma1.2p1_0594F.1_g185830 Hydrangea macrophylla HOM05D000193 ORTHO05D000776 7.7e-29 131.3 348 30.2
CSS0038050 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000776 1.0e-28 131.0 350 31.1
Cfa000920 Carpinus fangiana HOM05D000193 ORTHO05D000776 2.9e-28 129.4 348 30.7
CiPaw.09G121400 Carya illinoinensis HOM05D000193 ORTHO05D000776 3.8e-28 129.0 348 30.5
Cpa.g.c32097 Carica papaya HOM05D000193 ORTHO05D000776 5.0e-28 128.6 354 30.2
GSVIVG01021530001 Vitis vinifera HOM05D000193 ORTHO05D000776 5.0e-28 128.6 355 31.8
Manes.17G073000 Manihot esculenta HOM05D000193 ORTHO05D000776 8.5e-28 127.9 349 29.8
Nn3g20414 Nelumbo nucifera HOM05D000193 ORTHO05D000776 1.9e-27 126.7 351 31.6
vmacro03350 Vaccinium macrocarpon HOM05D000193 ORTHO05D000776 1.9e-27 126.7 358 32.4
Gorai.011G046300 Gossypium raimondii HOM05D000193 ORTHO05D000776 2.5e-27 126.3 382 30.6
TAR627G0534 Trochodendron aralioides HOM05D000193 ORTHO05D000776 9.4e-27 124.4 348 31.3
Eucgr.E02426 Eucalyptus grandis HOM05D000193 ORTHO05D000776 3.6e-26 122.5 348 29.9
Atru.chr10.1162 Acer truncatum HOM05D000193 ORTHO05D000776 4.7e-26 122.1 348 31.0
Sed0027454 Sechium edule HOM05D000193 ORTHO05D000776 6.1e-26 121.7 346 30.3
Lj1A1170G26 Lonicera japonica HOM05D000193 ORTHO05D000776 7.9e-26 121.3 342 30.4
PSO541G5869 Papaver somniferum HOM05D000193 ORTHO05D000776 2.3e-25 119.8 350 30.3
Glyma.09G087200 Glycine max HOM05D000193 ORTHO05D000776 5.2e-25 118.6 358 30.2
Phvul.009G210200 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 5.2e-25 118.6 350 29.4
Peaxi162Scf00317g00019 Petunia axillaris HOM05D000193 ORTHO05D000776 6.7e-25 118.2 343 30.9
DCAR_027900 Daucus carota HOM05D000193 ORTHO05D000776 1.1e-24 117.5 338 30.2
Lalb_Chr11g0073391 Lupinus albus HOM05D000193 ORTHO05D000776 1.1e-24 117.5 347 28.2
Medtr2g049020 Medicago truncatula HOM05D000193 ORTHO05D000776 1.1e-24 117.5 351 29.6
Glyma.05G142400 Glycine max HOM05D000193 ORTHO05D000776 1.5e-24 117.1 346 28.9
CANSAT35G1415 Cannabis sativa HOM05D000193 ORTHO05D000776 2.0e-24 116.7 356 29.5
Lsat_1_v5_gn_7_27901 Lactuca sativa HOM05D000193 ORTHO05D000776 2.0e-24 116.7 341 29.6
Rhsim09G0006100 Rhododendron simsii HOM05D000193 ORTHO05D024284 2.0e-24 116.7 265 35.8
Ca_18165_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000776 3.3e-24 115.9 350 29.7
arahy.Tifrunner.gnm1.ann1.T3KBEX Arachis hypogaea HOM05D000193 ORTHO05D000776 7.4e-24 114.8 348 28.2
CDE02G1594 Ceratophyllum demersum HOM05D000193 ORTHO05D000776 7.4e-24 114.8 350 28.9
COL.COLO4_31034 Corchorus olitorius HOM05D000193 ORTHO05D000776 7.4e-24 114.8 270 34.8
MELO3C002755.2 Cucumis melo HOM05D000193 ORTHO05D000776 9.7e-24 114.4 348 29.0
MELO3C002756.2 Cucumis melo HOM05D000193 ORTHO05D000776 9.7e-24 114.4 312 32.1
CsaV3_1G004690 Cucumis sativus L. HOM05D000193 ORTHO05D000776 9.7e-24 114.4 348 28.7
TPR.G33392 Trifolium pratense HOM05D000193 ORTHO05D000776 9.7e-24 114.4 347 29.1
arahy.Tifrunner.gnm1.ann1.FRHN34 Arachis hypogaea HOM05D000193 ORTHO05D000776 1.3e-23 114.0 348 28.2
Phvul.009G216100 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 1.3e-23 114.0 347 27.7
ClCG03G006630 Citrullus lanatus HOM05D000193 ORTHO05D000776 1.7e-23 113.6 343 30.0
Glyma.05G142500 Glycine max HOM05D000193 ORTHO05D000776 2.2e-23 113.2 347 28.8
QL05p055661 Quercus lobata HOM05D000193 ORTHO05D000776 2.2e-23 113.2 348 28.7
QL05p055681 Quercus lobata HOM05D000193 ORTHO05D000776 2.2e-23 113.2 348 28.7
Phvul.009G216000 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 3.7e-23 112.5 347 28.0
VMungo1309G2265 Vigna mungo HOM05D000193 ORTHO05D000776 3.7e-23 112.5 351 28.8
Aqoxy4G00064 Aquilegia oxysepala HOM05D000193 ORTHO05D000776 4.8e-23 112.1 351 28.8
Nitab4.5_0001594g0020 Nicotiana tabacum HOM05D000193 ORTHO05D000776 4.8e-23 112.1 343 30.3
Lj6g0026473 Lotus japonicus HOM05D000193 ORTHO05D000776 6.3e-23 111.7 347 28.8
Phvul.009G216200 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 6.3e-23 111.7 347 27.7
QL05p055589 Quercus lobata HOM05D000193 ORTHO05D000776 8.2e-23 111.3 351 28.2
Lalb_Chr07g0187581 Lupinus albus HOM05D000193 ORTHO05D000776 1.8e-22 110.2 342 27.5
Nitab4.5_0011594g0010 Nicotiana tabacum HOM05D000193 ORTHO05D000776 3.1e-22 109.4 344 29.9
Glyma.09G087400 Glycine max HOM05D000193 ORTHO05D000776 4.1e-22 109.0 347 27.1
Lj4g0023235 Lotus japonicus HOM05D000193 ORTHO05D000776 5.3e-22 108.6 347 29.7
ClCG03G006610 Citrullus lanatus HOM05D000193 ORTHO05D000776 7.0e-22 108.2 348 27.9
Rhsim09G0004600 Rhododendron simsii HOM05D000193 ORTHO05D024284 7.0e-22 108.2 186 40.9
Glyma.08G098400 Glycine max HOM05D000193 ORTHO05D000776 9.1e-22 107.8 345 27.2
Ca_02555_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000776 1.2e-21 107.5 350 28.9
VMungo1309G2490 Vigna mungo HOM05D000193 ORTHO05D000776 1.2e-21 107.5 346 28.9
TPR.G9579 Trifolium pratense HOM05D000193 ORTHO05D000776 1.6e-21 107.1 346 28.9
arahy.Tifrunner.gnm1.ann1.HAQ1CQ Arachis hypogaea HOM05D000193 ORTHO05D000776 2.6e-21 106.3 341 27.6
arahy.Tifrunner.gnm1.ann1.N15R1L Arachis hypogaea HOM05D000193 ORTHO05D000776 2.6e-21 106.3 343 28.0
Glyma.15G194600 Glycine max HOM05D000193 ORTHO05D000776 3.5e-21 105.9 347 27.1
arahy.Tifrunner.gnm1.ann1.1G3KFZ Arachis hypogaea HOM05D000193 ORTHO05D000776 4.5e-21 105.5 341 27.3
arahy.Tifrunner.gnm1.ann1.FKNV1Q Arachis hypogaea HOM05D000193 ORTHO05D000776 4.5e-21 105.5 349 27.8
Phvul.002G180200 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 7.7e-21 104.8 340 28.5
Lj6g0024677 Lotus japonicus HOM05D000193 ORTHO05D000776 1.0e-20 104.4 342 27.8
TAR627G0059 Trochodendron aralioides HOM05D000193 ORTHO05D000776 1.0e-20 104.4 185 40.0
Migut.M00889 Erythranthe guttata HOM05D000193 ORTHO05D000776 6.5e-20 101.7 343 27.4
Glyma.08G098500 Glycine max HOM05D000193 ORTHO05D000776 9.4e-19 97.8 179 36.9
Lalb_Chr11g0073361 Lupinus albus HOM05D000193 ORTHO05D000776 1.6e-18 97.1 180 38.3
Psat7g081600 Pisum sativum HOM05D000193 ORTHO05D000776 4.7e-18 95.5 179 35.2
Cfa016154 Carpinus fangiana HOM05D000193 ORTHO05D000776 4.0e-17 92.4 331 26.9
Manes.15G123867 Manihot esculenta HOM05D000193 ORTHO05D000776 4.0e-17 92.4 77 66.2
Sopen08g015560 Solanum pennellii HOM05D000193 ORTHO05D000776 4.0e-17 92.4 180 36.7
HanXRQChr04g0115671 Helianthus annuus HOM05D000193 ORTHO05D000776 1.2e-16 90.9 77 64.9
Medtr5g077590 Medicago truncatula HOM05D000193 ORTHO05D000776 2.6e-16 89.7 307 27.0
Cfa016155 Carpinus fangiana HOM05D000193 ORTHO05D000776 4.4e-16 89.0 338 26.0
Phvul.003G103900 Phaseolus vulgaris HOM05D000193 ORTHO05D000776 4.4e-16 89.0 179 34.6
ECA236G3340 Erigeron canadensis HOM05D000193 ORTHO05D000776 5.7e-16 88.6 77 63.6
Potri.004G133340 Populus trichocarpa HOM05D000193 ORTHO05D000776 1.3e-15 87.4 62 71.0
ATR1098G033 Amborella trichopoda HOM05D000193 ORTHO05D000776 1.7e-15 87.0 62 69.4
RcHm_v2.0_Chr5g0014501 Rosa chinensis HOM05D000193 ORTHO05D000776 1.7e-15 87.0 280 30.0
Solyc08g048290.4 Solanum lycopersicum HOM05D000193 ORTHO05D000776 6.3e-15 85.1 77 62.3
Lj4g0025067 Lotus japonicus HOM05D000193 ORTHO05D000776 2.7e-13 79.7 333 24.9
Medtr6g006260 Medicago truncatula HOM05D000193 ORTHO05D024284 3.5e-13 79.3 179 33.5
SalBow8G5445 Salvia bowleyana HOM05D000193 ORTHO05D000776 1.3e-12 77.4 77 55.8
Ca_02552_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000776 2.9e-12 76.3 207 27.5
Actinidia01567 Actinidia chinensis HOM05D000193 ORTHO05D000776 6.5e-12 75.1 243 27.6
Lj4C928T1 Lonicera japonica HOM05D000193 ORTHO05D000776 6.5e-12 75.1 79 59.5
PGSC0003DMG400017883 Solanum tuberosum HOM05D000193 ORTHO05D000776 1.5e-11 73.9 59 67.8
Lj2A321T67 Lonicera japonica HOM05D000193 ORTHO05D000776 4.2e-11 72.4 77 57.1
VMungo0251G1308 Vigna mungo HOM05D000193 ORTHO05D000776 7.2e-11 71.6 77 53.2
Os07g0151200 Oryza sativa ssp. japonica HOM05D000193 ORTHO05D000776 4.7e-10 68.9 78 53.8
CDE08G1397 Ceratophyllum demersum HOM05D000193 ORTHO05D000776 8.0e-10 68.2 124 35.5
CDE08G1452 Ceratophyllum demersum HOM05D000193 ORTHO05D000776 8.0e-10 68.2 139 33.8
Ca_18166_v3 Cicer arietinum L. HOM05D000193 ORTHO05D000776 2.3e-09 66.6 62 54.8
Aqoxy2G02039 Aquilegia oxysepala HOM05D000193 ORTHO05D000776 3.0e-09 66.2 183 29.5
SEGI_18841 Sequoiadendron giganteum HOM05D000193 ORTHO05D000776 5.2e-09 65.5 338 23.7
MBI14_g35403_MAGBIO Magnolia biondii HOM05D000193 ORTHO05D000776 8.8e-09 64.7 184 29.3
Medtr5g077580 Medicago truncatula HOM05D000193 ORTHO05D000776 1.5e-08 63.9 312 25.6
Potri.006G015200 Populus trichocarpa HOM05D000193 ORTHO05D000776 1.5e-08 63.9 182 29.7
Sc24g0001670 Simmondsia chinensis HOM05D000193 ORTHO05D000776 1.5e-08 63.9 49 61.2
arahy.Tifrunner.gnm1.ann1.0E9YFP Arachis hypogaea HOM05D000193 ORTHO05D000776 2.0e-08 63.5 76 51.3
Medtr2g048720 Medicago truncatula HOM05D000193 ORTHO05D000776 2.0e-08 63.5 46 58.7
arahy.Tifrunner.gnm1.ann1.QDYD89 Arachis hypogaea HOM05D000193 ORTHO05D000776 4.4e-08 62.4 68 54.4
Lj4g0008248 Lotus japonicus HOM05D000193 ORTHO05D000776 5.7e-08 62.0 77 49.4
PSO541G2849 Papaver somniferum HOM05D000193 ORTHO05D000776 5.7e-08 62.0 348 23.3
PSO675G0369 Papaver somniferum HOM05D000193 ORTHO05D000776 5.7e-08 62.0 345 23.5
vmacro03631 Vaccinium macrocarpon HOM05D000193 ORTHO05D000776 5.7e-08 62.0 184 28.8
Sabra06G0010700 Salix brachista HOM05D000193 ORTHO05D000776 7.5e-08 61.6 182 29.7
Lalb_Chr11g0073381 Lupinus albus HOM05D000193 ORTHO05D017201 9.8e-08 61.2 52 55.8
TAR365G0465 Trochodendron aralioides HOM05D000193 ORTHO05D000776 9.8e-08 61.2 185 28.1
TPR.G22701 Trifolium pratense HOM05D000193 ORTHO05D000776 1.3e-07 60.8 77 46.8
TPR.G25731 Trifolium pratense HOM05D000193 ORTHO05D000776 1.3e-07 60.8 77 46.8
TPR.G9565 Trifolium pratense HOM05D000193 ORTHO05D000776 1.3e-07 60.8 155 31.6
Zm00001eb300060 Zea mays HOM05D000193 ORTHO05D000776 1.3e-07 60.8 319 23.8
CANSAT56G2414 Cannabis sativa HOM05D000193 ORTHO05D000776 1.7e-07 60.5 182 28.6
CANSAT21G2040 Cannabis sativa HOM05D000193 ORTHO05D000776 2.2e-07 60.1 182 28.6
HanXRQChr03g0084501 Helianthus annuus HOM05D000193 ORTHO05D000776 2.8e-07 59.7 184 29.3
CSS0011298 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000776 3.7e-07 59.3 184 26.6
CSS0035595 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000776 3.7e-07 59.3 184 26.6
CANSAT56G1209 Cannabis sativa HOM05D000193 ORTHO05D000776 3.7e-07 59.3 182 29.1
CANSAT56G3306 Cannabis sativa HOM05D000193 ORTHO05D000776 4.8e-07 58.9 181 28.2
Ciclev10014742m.g Citrus clementina HOM05D000193 ORTHO05D000776 4.8e-07 58.9 182 29.1
SEGI_04241 Sequoiadendron giganteum HOM05D000193 ORTHO05D000776 4.8e-07 58.9 85 43.5
TAR626G0462 Trochodendron aralioides HOM05D000193 ORTHO05D000776 6.3e-07 58.5 185 27.0
Cc09_g08090 Coffea canephora HOM05D000193 ORTHO05D000776 8.3e-07 58.2 45 64.4
Hund21147 Selenicereus undatus HOM05D000193 ORTHO05D000776 8.3e-07 58.2 185 28.6
Rhsim13G0144000 Rhododendron simsii HOM05D000193 ORTHO05D000776 1.4e-06 57.4 184 28.3
RcHm_v2.0_Chr7g0190531 Rosa chinensis HOM05D000193 ORTHO05D000776 1.4e-06 57.4 256 26.6
TPR.G23119 Trifolium pratense HOM05D000193 ORTHO05D017201 1.4e-06 57.4 65 49.2
MSTRG.7155 Avicennia marina HOM05D000193 ORTHO05D000776 1.8e-06 57.0 184 27.2
Potri.006G015300 Populus trichocarpa HOM05D000193 ORTHO05D000776 1.8e-06 57.0 182 27.5
SEGI_28011 Sequoiadendron giganteum HOM05D000193 ORTHO05D000776 1.8e-06 57.0 85 42.4
CSS0016647 Camellia sinensis var. sinensis HOM05D000193 ORTHO05D000776 2.4e-06 56.6 265 25.7
Prupe.4G008300 Prunus persica HOM05D000193 ORTHO05D000776 2.4e-06 56.6 182 28.0
Cc00_g03410 Coffea canephora HOM05D000193 ORTHO05D000776 3.1e-06 56.2 183 27.9
Prupe.4G008400 Prunus persica HOM05D000193 ORTHO05D000776 4.1e-06 55.8 181 27.6
MD10G1335500 Malus domestica HOM05D000193 ORTHO05D000776 5.4e-06 55.5 182 26.9
CANSAT56G3176 Cannabis sativa HOM05D000193 ORTHO05D000776 7.0e-06 55.1 182 27.5
Dinv05018 Davidia involucrata HOM05D000193 ORTHO05D000776 7.0e-06 55.1 184 26.6
Lj4C872T9 Lonicera japonica HOM05D000193 ORTHO05D000776 7.0e-06 55.1 324 23.5
MD05G1359700 Malus domestica HOM05D000193 ORTHO05D000776 7.0e-06 55.1 181 27.1
HPP92_008538 Vanilla planifolia HOM05D000193 ORTHO05D000776 7.0e-06 55.1 346 22.0
Aqoxy4G02201 Aquilegia oxysepala HOM05D000193 ORTHO05D000776 9.1e-06 54.7 65 44.6


User provided reference genes

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