Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00159 Brassica carinata HOM05D001789 ORTHO05D001755 8.2e-126 453.8 232 100.0
C05p12810 Brassica napus HOM05D001789 ORTHO05D001755 1.5e-47 193.7 127 80.3
C04p32670 Brassica napus HOM05D001789 ORTHO05D001755 7.4e-26 121.7 63 95.2
C02p40820 Brassica napus HOM05D001789 ORTHO05D001755 1.3e-25 120.9 71 85.9
BolC2t10099H Brassica oleracea HOM05D001789 ORTHO05D001755 1.3e-25 120.9 71 85.9
BolC5t30026H Brassica oleracea HOM05D001789 ORTHO05D001755 4.8e-25 119.0 60 98.3
C09p67110 Brassica napus HOM05D001789 ORTHO05D001755 6.3e-25 118.6 63 95.2
BcaC09g51561 Brassica carinata HOM05D000816 ORTHO05D001755 8.2e-25 118.2 63 95.2
BolC1t01159H Brassica oleracea HOM05D001789 ORTHO05D001755 8.2e-25 118.2 63 95.2
C01p11840 Brassica napus HOM05D001789 ORTHO05D001755 3.1e-24 116.3 68 89.7
THA.LOC104821668 Tarenaya hassleriana HOM05D001789 ORTHO05D001755 3.6e-20 102.8 70 75.7
AL3G14790 Arabidopsis lyrata HOM05D001789 ORTHO05D001755 6.1e-20 102.1 66 80.3
Aa31LG5G15100 Aethionema arabicum HOM05D001789 ORTHO05D001755 7.9e-20 101.7 66 80.3
CARHR078940 Cardamine hirsuta HOM05D001789 ORTHO05D001755 1.0e-19 101.3 68 77.9
Sp3g03550 Schrenkiella parvula HOM05D001789 ORTHO05D001755 2.3e-19 100.1 65 81.5
BcaC03g16286 Brassica carinata HOM05D001789 ORTHO05D001755 6.7e-19 98.6 56 85.7
BcaB04g21349 Brassica carinata HOM05D001789 ORTHO05D001755 8.8e-19 98.2 65 80.0
BcaC09g47780 Brassica carinata HOM05D001789 ORTHO05D001755 8.8e-19 98.2 65 80.0
BNapus_Darmor_BZH_scaffold_78p00990 Brassica napus HOM05D001789 ORTHO05D001755 8.8e-19 98.2 65 80.0
BraA01t04507Z Brassica rapa HOM05D001789 ORTHO05D001755 8.8e-19 98.2 65 80.0
BcaB04g19305 Brassica carinata HOM05D001789 ORTHO05D001755 1.5e-18 97.4 70 74.3
Dinv20290 Davidia involucrata HOM05D001789 ORTHO05D001755 7.4e-18 95.1 70 68.6
Carub.0003s0386 Capsella rubella HOM05D001789 ORTHO05D001755 1.7e-17 94.0 65 75.4
COL.COLO4_15370 Corchorus olitorius HOM05D001789 ORTHO05D001755 1.7e-17 94.0 70 67.1
GSVIVG01036270001 Vitis vinifera HOM05D001789 ORTHO05D001755 1.7e-17 94.0 70 65.7
Thhalv10020698m.g Eutrema salsugineum HOM05D001789 ORTHO05D001755 2.2e-17 93.6 63 77.8
Duzib128G1133 Durio zibethinus HOM05D001789 ORTHO05D001755 3.7e-17 92.8 70 64.3
CSS0016190 Camellia sinensis var. sinensis HOM05D001789 ORTHO05D001755 6.3e-17 92.0 70 65.7
Thecc.05G281000 Theobroma cacao HOM05D001789 ORTHO05D001755 6.3e-17 92.0 68 67.6
Ciclev10028402m.g Citrus clementina HOM05D001789 ORTHO05D001755 1.1e-16 91.3 70 64.3
vmacro13812 Vaccinium macrocarpon HOM05D001789 ORTHO05D001755 1.1e-16 91.3 69 65.2
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 1.4e-16 90.9 69 68.1
AT3G04710 Arabidopsis thaliana HOM05D001789 ORTHO05D001755 1.8e-16 90.5 54 83.3
Manes.08G136000 Manihot esculenta HOM05D001789 ORTHO05D001755 1.8e-16 90.5 70 65.7
Ah.06g192110 Amaranthus hybridus HOM05D001789 ORTHO05D001755 5.3e-16 89.0 76 57.9
Manes.09G151500 Manihot esculenta HOM05D001789 ORTHO05D001755 5.3e-16 89.0 70 64.3
MD04G1226000 Malus domestica HOM05D001789 ORTHO05D001755 9.1e-16 88.2 70 61.4
BcaC01g04353 Brassica carinata HOM05D001789 ORTHO05D001755 1.5e-15 87.4 66 71.2
C03p41100 Brassica napus HOM05D001789 ORTHO05D001755 1.5e-15 87.4 66 71.2
CANSAT54G0997 Cannabis sativa HOM05D001789 ORTHO05D001755 1.5e-15 87.4 69 62.3
ECA238G2814 Erigeron canadensis HOM05D001789 ORTHO05D001755 1.5e-15 87.4 68 66.2
Prupe.6G344800 Prunus persica HOM05D001789 ORTHO05D001755 1.5e-15 87.4 70 61.4
A03p33800 Brassica napus HOM05D001789 ORTHO05D001755 2.0e-15 87.0 66 71.2
ClCG02G016750 Citrullus lanatus HOM05D001789 ORTHO05D001755 2.0e-15 87.0 69 62.3
MELO3C004392.2 Cucumis melo HOM05D001789 ORTHO05D001755 2.0e-15 87.0 69 62.3
CsaV3_2G003990 Cucumis sativus L. HOM05D001789 ORTHO05D001755 2.0e-15 87.0 69 62.3
Oeu016446.1 Olea europaea HOM05D001789 ORTHO05D000116 2.0e-15 87.0 69 65.2
Gohir.D13G175000 Gossypium hirsutum HOM05D001789 ORTHO05D001755 2.6e-15 86.7 70 60.0
TAR365G0302 Trochodendron aralioides HOM05D001789 ORTHO05D001755 2.6e-15 86.7 66 65.2
Gorai.013G200300 Gossypium raimondii HOM05D001789 ORTHO05D001755 3.4e-15 86.3 70 60.0
Lju50C34T11 Lonicera japonica HOM05D001789 ORTHO05D001755 3.4e-15 86.3 69 63.8
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 3.4e-15 86.3 70 64.3
Rhsim07G0074300 Rhododendron simsii HOM05D001789 ORTHO05D001755 3.4e-15 86.3 66 65.2
CiPaw.07G068600 Carya illinoinensis HOM05D001789 ORTHO05D001755 5.9e-15 85.5 70 61.4
Aqoxy2G03554 Aquilegia oxysepala HOM05D001789 ORTHO05D001755 7.7e-15 85.1 66 66.7
CDE06G0784 Ceratophyllum demersum HOM05D001789 ORTHO05D001755 7.7e-15 85.1 70 58.6
Gohir.A13G169500 Gossypium hirsutum HOM05D001789 ORTHO05D001755 7.7e-15 85.1 70 58.6
FAN02G1989 Fragaria x ananassa HOM05D001789 ORTHO05D001755 1.0e-14 84.7 66 63.6
FAN09G2804 Fragaria x ananassa HOM05D001789 ORTHO05D001755 1.0e-14 84.7 66 63.6
FvH4_6g02680 Fragaria vesca HOM05D001789 ORTHO05D001755 1.3e-14 84.3 66 63.6
PGR004G2017 Punica granatum HOM05D001789 ORTHO05D001755 1.3e-14 84.3 69 60.9
Sabra05G0047600 Salix brachista HOM05D001789 ORTHO05D001755 1.7e-14 84.0 67 65.7
Sed0022842 Sechium edule HOM05D001789 ORTHO05D001755 1.7e-14 84.0 68 60.3
Sc15g0002530 Simmondsia chinensis HOM05D001789 ORTHO05D001755 2.2e-14 83.6 68 61.8
BcaC05g25403 Brassica carinata HOM05D001789 ORTHO05D001755 2.9e-14 83.2 46 93.5
SEGI_21200 Sequoiadendron giganteum HOM05D001789 ORTHO05D001755 2.9e-14 83.2 70 62.9
SGA_v2.0_scaffold36G14395 Striga asiatica HOM05D001789 ORTHO05D001755 2.9e-14 83.2 64 67.2
AUR62004900 Chenopodium quinoa HOM05D001789 ORTHO05D001755 3.8e-14 82.8 68 58.8
Cc02_g30810 Coffea canephora HOM05D001789 ORTHO05D001755 3.8e-14 82.8 70 62.9
ATR0665G154 Amborella trichopoda HOM05D001789 ORTHO05D001755 6.5e-14 82.0 70 62.9
Eucgr.H04321 Eucalyptus grandis HOM05D001789 ORTHO05D001755 6.5e-14 82.0 66 62.1
RcHm_v2.0_Chr3g0450651 Rosa chinensis HOM05D001789 ORTHO05D001755 8.5e-14 81.6 66 60.6
MSTRG.20457 Avicennia marina HOM05D001789 ORTHO05D001755 1.4e-13 80.9 65 63.1
Lsat_1_v5_gn_2_64421 Lactuca sativa HOM05D001789 ORTHO05D001755 3.2e-13 79.7 70 57.1
TAR636G0648 Trochodendron aralioides HOM05D001789 ORTHO05D001755 5.5e-13 79.0 69 58.0
AUR62001052 Chenopodium quinoa HOM05D001789 ORTHO05D001755 1.2e-12 77.8 66 57.6
Migut.B01098 Erythranthe guttata HOM05D001789 ORTHO05D001755 2.7e-12 76.6 65 61.5
Carub.0002s1030 Capsella rubella HOM05D001789 ORTHO05D001755 1.0e-11 74.7 48 77.1
Psat4g049680 Pisum sativum HOM05D001789 ORTHO05D001755 1.4e-11 74.3 63 57.1
Nitab4.5_0006088g0040 Nicotiana tabacum HOM05D001789 ORTHO05D001755 1.8e-11 73.9 70 58.6
Nitab4.5_0009495g0030 Nicotiana tabacum HOM05D001789 ORTHO05D001755 2.3e-11 73.6 70 57.1
EL10Ac4g09088 Beta vulgaris HOM05D001789 ORTHO05D001755 6.7e-11 72.0 65 53.8
VMungo0343G0001 Vigna mungo HOM05D001789 ORTHO05D001755 8.8e-11 71.6 57 57.9
Sopen01g040860 Solanum pennellii HOM05D001789 ORTHO05D001755 4.8e-09 65.9 72 54.2
CAN.G134.82 Capsicum annuum HOM05D001789 ORTHO05D001755 8.2e-09 65.1 69 52.2
HanXRQChr14g0446601 Helianthus annuus HOM05D001789 ORTHO05D001755 8.2e-09 65.1 68 52.9
Psat0s1144g0120 Pisum sativum HOM05D001789 ORTHO05D001755 8.2e-09 65.1 56 55.4
PSO541G5496 Papaver somniferum HOM05D001789 ORTHO05D001755 4.1e-08 62.8 60 55.0
unitig_37.g12638 Utricularia gibba HOM05D001789 ORTHO05D001755 7.0e-08 62.0 42 69.0
SalBow8G1668 Salvia bowleyana HOM05D001789 ORTHO05D001755 1.0e-06 58.2 69 49.3
Duzib177G0999 Durio zibethinus HOM05D001789 ORTHO05D001755 1.3e-06 57.8 50 60.0
Os05g0103600 Oryza sativa ssp. japonica HOM05D001789 ORTHO05D001755 1.3e-06 57.8 44 59.1
CAN.G134.77 Capsicum annuum HOM05D001789 ORTHO05D001755 6.5e-06 55.5 70 45.7


User provided reference genes

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