Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 2.5e-183 645.2 307 100.0
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 4.5e-180 634.4 307 98.0
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 6.5e-179 630.6 307 97.7
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 6.5e-179 630.6 307 98.7
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 5.5e-178 627.5 307 97.1
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.5e-172 609.4 308 94.2
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 6.5e-163 577.4 312 87.8
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 1.5e-162 576.2 312 87.5
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.1e-159 566.6 312 85.3
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 2.7e-156 555.4 315 85.1
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 2.0e-151 539.3 307 82.4
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 4.9e-142 508.1 312 78.5
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 3.1e-128 462.2 320 70.9
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.4e-117 426.0 319 64.9
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 7.8e-116 421.0 316 64.2
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 8.6e-115 417.5 321 64.2
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.1e-114 417.2 312 64.7
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.1e-114 417.2 312 65.1
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.2e-113 413.7 312 64.4
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.6e-113 413.3 319 61.1
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 4.7e-113 411.8 332 63.3
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 4.0e-112 408.7 317 61.8
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.2e-111 407.1 309 61.2
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 1.5e-111 406.8 314 63.4
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 2.0e-111 406.4 319 61.4
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 2.6e-111 406.0 354 58.2
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 3.4e-111 405.6 324 63.3
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 3.4e-111 405.6 307 61.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.4e-111 405.2 309 61.2
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.3e-110 403.7 311 63.3
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 2.2e-110 402.9 316 61.7
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.9e-110 402.5 315 62.9
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 8.4e-110 401.0 312 61.9
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.9e-109 399.8 318 61.0
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 2.4e-109 399.4 308 64.9
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 3.2e-109 399.1 312 62.8
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 5.4e-109 398.3 320 60.9
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 5.4e-109 398.3 317 61.8
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 7.1e-109 397.9 314 62.4
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 2.7e-108 396.0 315 61.0
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 3.5e-108 395.6 316 60.4
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 4.6e-108 395.2 310 63.2
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.0e-107 394.0 320 63.4
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.3e-107 393.7 314 60.2
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 3.0e-107 392.5 320 60.6
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.0e-107 392.5 316 62.3
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 6.6e-107 391.3 316 62.7
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.1e-106 390.6 318 60.1
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.9e-106 389.8 316 62.7
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 2.5e-106 389.4 309 62.1
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 1.2e-105 387.1 316 60.4
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.6e-105 386.7 311 59.8
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 2.8e-105 386.0 313 60.1
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 2.8e-105 386.0 316 60.8
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 6.2e-105 384.8 316 60.4
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 1.1e-104 384.0 308 61.7
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.4e-104 383.6 317 59.3
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 2.4e-104 382.9 318 60.1
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 3.1e-104 382.5 318 59.4
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 2.2e-102 376.3 319 58.9
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 3.8e-102 375.6 315 60.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 4.9e-102 375.2 315 58.7
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 8.4e-102 374.4 310 59.7
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.2e-101 372.1 269 67.3
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 5.4e-101 371.7 312 57.7
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 5.4e-101 371.7 322 58.4
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 9.3e-101 370.9 315 57.1
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 1.2e-100 370.5 313 58.5
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 4.6e-100 368.6 319 57.7
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.7e-99 366.7 361 52.1
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.1e-98 364.0 316 58.2
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.1e-98 364.0 310 58.7
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 7.3e-98 361.3 278 60.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.3e-97 360.5 308 57.8
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.8e-96 356.7 327 53.5
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.9e-96 354.8 316 55.7
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 4.5e-95 352.1 251 66.9
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.7e-94 350.1 294 58.5
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.4e-93 347.1 319 55.5
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 9.3e-93 344.4 319 54.9
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 5.1e-91 338.6 237 68.4
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 5.6e-90 335.1 232 67.2
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 2.8e-89 332.8 305 55.4
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.4e-88 330.5 234 66.7
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.4e-88 330.5 335 51.6
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.1e-88 329.3 317 52.7
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 3.1e-88 329.3 317 53.6
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 3.4e-87 325.9 236 65.7
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 9.9e-87 324.3 308 55.2
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 4.9e-86 322.0 332 51.2
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 1.1e-85 320.9 156 96.2
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.4e-85 319.7 318 51.3
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 5.1e-83 312.0 316 53.5
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 1.5e-82 310.5 328 52.4
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 7.6e-79 298.1 313 48.2
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 8.7e-75 284.6 323 48.9
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 1.4e-72 277.3 300 49.7
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 3.4e-71 272.7 316 48.1
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 3.8e-70 269.2 307 47.6
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 3.2e-69 266.2 207 60.9
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 4.2e-69 265.8 305 47.5
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 1.2e-68 264.2 211 60.2
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 1.2e-68 264.2 281 49.8
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.1e-66 257.7 247 50.6
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.9e-66 256.9 248 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 4.3e-66 255.8 265 49.1
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 2.2e-62 243.4 236 55.5
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 4.6e-60 235.7 177 68.4
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 4.8e-57 225.7 174 66.1
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.0e-54 218.0 316 39.2
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 1.8e-51 207.2 214 48.6
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 5.2e-51 205.7 252 48.4
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 3.5e-47 193.0 127 67.7
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 8.8e-43 178.3 224 41.1
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 1.7e-41 174.1 143 61.5
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 2.8e-41 173.3 138 55.8
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 3.2e-37 159.8 232 39.2
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 9.4e-37 158.3 295 35.9
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 6.1e-36 155.6 320 34.1
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 6.1e-36 155.6 142 50.7
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 8.0e-36 155.2 434 28.1
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.8e-32 144.1 170 47.1
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 5.9e-31 139.0 103 62.1
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 4.0e-19 99.8 61 72.1
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 4.1e-16 89.7 67 52.2
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.2e-15 88.2 53 71.7
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 7.8e-15 85.5 51 72.5
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.8e-12 77.0 45 66.7
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 3.6e-12 76.6 56 57.1
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.9e-08 64.3 41 63.4
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.3e-06 58.2 37 64.9
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 3.9e-06 56.6 31 80.6


User provided reference genes

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