Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 1.5e-77 293.9 142 100.0
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 1.5e-77 293.9 142 100.0
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 1.5e-77 293.9 142 100.0
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 3.3e-77 292.7 142 99.3
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 1.4e-75 287.3 142 95.1
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 3.1e-75 286.2 142 96.5
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 4.1e-75 285.8 142 95.8
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 9.0e-75 284.6 142 95.1
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 3.4e-74 282.7 142 93.7
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 3.4e-74 282.7 142 93.7
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 3.4e-74 282.7 142 93.7
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 3.4e-74 282.7 142 93.7
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 3.4e-74 282.7 142 93.7
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 7.7e-74 281.6 142 93.7
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 1.7e-73 280.4 142 93.7
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 2.2e-73 280.0 142 93.0
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 2.2e-73 280.0 142 93.0
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.1e-72 277.7 142 91.5
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 7.4e-69 265.0 142 90.1
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 2.2e-68 263.5 142 88.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 81.7
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 80.3
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 1.1e-64 251.1 142 79.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 1.4e-64 250.8 142 78.9
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 4.2e-64 249.2 143 80.4
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 4.2e-64 249.2 142 78.9
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 7.2e-64 248.4 142 78.2
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 9.4e-64 248.1 142 78.2
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 1.6e-63 247.3 142 78.2
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 2.1e-63 246.9 144 78.5
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 3.6e-63 246.1 142 77.5
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 3.6e-63 246.1 145 79.3
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 4.7e-63 245.7 143 79.7
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 7.9e-63 245.0 144 79.9
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 7.9e-63 245.0 151 77.5
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-62 244.6 144 79.9
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-62 244.6 144 79.2
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-62 244.6 144 79.2
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 1.0e-62 244.6 149 77.2
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 1.4e-62 244.2 142 78.9
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 2.3e-62 243.4 142 77.5
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 3.9e-62 242.7 142 78.2
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 3.9e-62 242.7 142 78.2
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 3.9e-62 242.7 144 78.5
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 3.9e-62 242.7 143 79.0
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 5.1e-62 242.3 143 77.6
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 8.8e-62 241.5 143 76.2
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 8.8e-62 241.5 143 77.6
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 1.1e-61 241.1 143 78.3
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 79.0
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.5e-61 240.7 143 79.0
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 2.0e-61 240.4 143 77.6
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.6e-61 240.0 149 73.8
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 3.3e-61 239.6 143 76.2
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 3.3e-61 239.6 142 77.5
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 4.4e-61 239.2 142 76.1
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 5.7e-61 238.8 144 75.7
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 5.7e-61 238.8 143 76.9
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 7.4e-61 238.4 142 77.5
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 1.3e-60 237.7 143 76.2
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.2e-60 236.9 143 75.5
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 2.8e-60 236.5 143 74.8
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 3.7e-60 236.1 143 76.9
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 3.7e-60 236.1 142 76.1
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 6.3e-60 235.3 143 75.5
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 8.2e-60 235.0 142 75.4
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 1.1e-59 234.6 142 74.6
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 2.4e-59 233.4 142 73.9
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 75.5
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 4.1e-59 232.6 143 75.5
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 5.3e-59 232.3 146 75.3
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 7.0e-59 231.9 142 72.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.2e-58 231.1 142 73.9
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 1.5e-58 230.7 142 73.9
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.0e-58 230.3 142 72.5
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 2.0e-58 230.3 141 74.5
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 2.6e-58 229.9 142 71.1
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 3.5e-58 229.6 142 71.8
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.5e-58 229.6 141 74.5
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 4.5e-58 229.2 141 74.5
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 5.9e-58 228.8 143 71.3
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 5.9e-58 228.8 142 72.5
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.0e-57 228.0 142 71.8
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.0e-57 228.0 141 73.8
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.0e-57 228.0 141 73.8
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 2.2e-57 226.9 144 69.4
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.2e-57 226.9 144 70.8
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 2.9e-57 226.5 144 70.8
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.9e-57 226.5 142 73.2
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 2.9e-57 226.5 142 71.8
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 3.8e-57 226.1 143 71.3
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 3.8e-57 226.1 142 71.1
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 5.0e-57 225.7 142 73.2
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 8.5e-57 224.9 141 71.6
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 8.5e-57 224.9 142 71.8
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 1.4e-56 224.2 142 79.6
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-56 224.2 142 70.4
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.9e-56 223.8 141 70.2
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 2.5e-56 223.4 141 70.2
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 3.2e-56 223.0 142 69.7
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 4.2e-56 222.6 142 69.7
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 5.5e-56 222.2 142 71.1
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.2e-55 221.1 143 71.3
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.4e-54 217.6 142 69.0
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.4e-54 217.6 142 69.0
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 5.2e-54 215.7 142 68.3
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.2e-48 196.4 142 61.3
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 8.0e-47 191.8 144 59.0
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 8.8e-46 188.3 142 61.3
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 1.3e-44 184.5 138 59.4
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.2e-44 183.7 142 56.3
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 4.5e-42 176.0 142 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.2e-41 173.7 142 59.2
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.9e-40 170.6 115 67.0
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 9.8e-37 158.3 109 66.1
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 4.8e-36 156.0 103 68.0
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 4.1e-35 152.9 110 65.5
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 5.4e-35 152.5 105 67.6
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 9.1e-35 151.8 140 52.1
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 2.3e-30 137.1 113 58.4
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 6.8e-30 135.6 130 48.5
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 3.7e-28 129.8 110 56.4
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.0e-17 95.1 143 37.1
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.9e-17 93.2 142 40.1
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.2e-15 85.9 142 37.3
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 7.0e-11 72.4 119 40.3
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 9.2e-11 72.0 111 39.6
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 3.9e-09 66.6 32 84.4
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 1.6e-07 61.2 35 68.6
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 1.8e-06 57.8 35 65.7


User provided reference genes

Program Settings